cluster # 188

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Anopheles gambiae
cluster # 188 cluster # 188 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_188#0 length = 835 sequences # 1

consensus_188#1 length = 75 sequences # 1

consensusID : consensus_188#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 835
fasta sequence

                              [CGAGGTTTATATTGATAAACCCACATCGCTGCAGTTACATGNCTGGTTATCTGTGCCAACATTGCCAGTCCAACTGACAAACCANAGGCAAGAACANATCAGCAAAGAAGAGGTCAACAATGAATCCGATCAAGATACTTCGGCAGCCAGGCNTCTCGACTGGACGGGATCAGCGTATCCGNGAGGGTCCCACAGGGACAAGATATTCCGTGGTATTCAGCCGTACGTGNTAAACTATNAGTAGTAGGCNGNATNTCTCATCTACTATCTAGCATTTTGCGCGAAGAAAACGACCATATGNCCGGAAGGTATGGTNGCTGAGCTCGCTATTCACGAGCATGTANCCTGGGGCCATGGGAGGAAAAGCACGCTGATATCTAGAAGGACTAACCAACTAGCGAAACAAGGGAGGANNCCGGTACTACCAAAAGCTCNGAATAATCGACACANGCCCGGATGAAAATGACGCTGGCAGTGACACGTTGCGGAAGGCATGCNCAACTAANAGCCGGTCAACGTNTACGAANACCCATATAGTCTGACTTCNAATGTGTACAGCTGCGTTNACTGGCTTTGTAGGTAACCCGATAGATCAATTCTANGTCCCTATCNTGCANAAACGNCTGGTAACAGGTTNGGTGAACCAACGCTGATTCAACAAATGAGCAAATATCAACGGAGTNACCCAGAGAGGNGTNAAATAGGCTCTTNACCGGGTAACTGAATATTGCCGCGATTNAACGTTGAGTTAATAANATGGGCTTCGTACCATTAAGCTGACTAGCTGAAGGTACATGTACAAAGAATACATTCCCATTCAAATTNGAAAAAGAAT]

[+] EMBL AL692567             [CGAGGTTTATATTGATAAACCCACATCGCTGCAGTTACATGNCTGGTTATCTGTGCCAACATTGCCAGTCCAACTGACAAACCANAGGCAAGAACANATCAGCAAAGAAGAGGTCAACAATGAATCCGATCAAGATACTTCGGCAGCCAGGCNTCTCGACTGGACGGGATCAGCGTATCCGNGAGGGTCCCACAGGGACAAGATATTCCGTGGTATTCAGCCGTACGTGNTAAACTATNAGTAGTAGGCNGNATNTCTCATCTACTATCTAGCATTTTGCGCGAAGAAAACGACCATATGNCCGGAAGGTATGGTNGCTGAGCTCGCTATTCACGAGCATGTANCCTGGGGCCATGGGAGGAAAAGCACGCTGATATCTAGAAGGACTAACCAACTAGCGAAACAAGGGAGGANNCCGGTACTACCAAAAGCTCNGAATAATCGACACANGCCCGGATGAAAATGACGCTGGCAGTGACACGTTGCGGAAGGCATGCNCAACTAANAGCCGGTCAACGTNTACGAANACCCATATAGTCTGACTTCNAATGTGTACAGCTGCGTTNACTGGCTTTGTAGGTAACCCGATAGATCAATTCTANGTCCCTATCNTGCANAAACGNCTGGTAACAGGTTNGGTGAACCAACGCTGATTCAACAAATGAGCAAATATCAACGGAGTNACCCAGAGAGGNGTNAAATAGGCTCTTNACCGGGTAACTGAATATTGCCGCGATTNAACGTTGAGTTAATAANATGGGCTTCGTACCATTAAGCTGACTAGCTGAAGGTACATGTACAAAGAATACATTCCCATTCAAATTNGAAAAAGAAT]




>consensus_188#0
CGAGGTTTATATTGATAAACCCACATCGCTGCAGTTACATGNCTGGTTATCTGTGCCAAC
ATTGCCAGTCCAACTGACAAACCANAGGCAAGAACANATCAGCAAAGAAGAGGTCAACAA
TGAATCCGATCAAGATACTTCGGCAGCCAGGCNTCTCGACTGGACGGGATCAGCGTATCC
GNGAGGGTCCCACAGGGACAAGATATTCCGTGGTATTCAGCCGTACGTGNTAAACTATNA
GTAGTAGGCNGNATNTCTCATCTACTATCTAGCATTTTGCGCGAAGAAAACGACCATATG
NCCGGAAGGTATGGTNGCTGAGCTCGCTATTCACGAGCATGTANCCTGGGGCCATGGGAG
GAAAAGCACGCTGATATCTAGAAGGACTAACCAACTAGCGAAACAAGGGAGGANNCCGGT
ACTACCAAAAGCTCNGAATAATCGACACANGCCCGGATGAAAATGACGCTGGCAGTGACA
CGTTGCGGAAGGCATGCNCAACTAANAGCCGGTCAACGTNTACGAANACCCATATAGTCT
GACTTCNAATGTGTACAGCTGCGTTNACTGGCTTTGTAGGTAACCCGATAGATCAATTCT
ANGTCCCTATCNTGCANAAACGNCTGGTAACAGGTTNGGTGAACCAACGCTGATTCAACA
AATGAGCAAATATCAACGGAGTNACCCAGAGAGGNGTNAAATAGGCTCTTNACCGGGTAA
CTGAATATTGCCGCGATTNAACGTTGAGTTAATAANATGGGCTTCGTACCATTAAGCTGA
CTAGCTGAAGGTACATGTACAAAGAATACATTCCCATTCAAATTNGAAAAAGAAT

consensusID : consensus_188#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 75
fasta sequence

                              [GAAGCCNTCACCTTCCTCTTTCACANCATGCTGGGATATGCGCTCNTGCTGACGGTGATGGTGTACAATGGATAC]

[+] EMBL BX624987             [GAAGCCNTCACCTTCCTCTTTCACANCATGCTGGGATATGCGCTCNTGCTGACGGTGATGGTGTACAATGGATAC]




>consensus_188#1
GAAGCCNTCACCTTCCTCTTTCACANCATGCTGGGATATGCGCTCNTGCTGACGGTGATG
GTGTACAATGGATAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_188#0      CGAGGTTTATATTGATAAACCCACATCGCTGCAGTTACATGNCTGGTTATCTGTGCCAAC 60
consensus_188#1      ------------------------------------------------------------
                                                                                 

consensus_188#0      ATTGCCAGTCCAACTGACAAACCANAGGCAAGAACANATCAGCAAAGAAGAGGTCAACAA 120
consensus_188#1      ------------------------------------------------------------
                                                                                 

consensus_188#0      TGAATCCGATCAAGATACTTCGGCAGCCAGGCNTCTCGACTGGACGGGATCAGCGTATCC 180
consensus_188#1      ------------------------------------------------------------
                                                                                 

consensus_188#0      GNGAGGGTCCCACAGGGACAAGATATTCCGTGGTATTCAGCCGTACGTGNTAAACTATNA 240
consensus_188#1      ------------------------------------------------------------
                                                                                 

consensus_188#0      GTAGTAGGCNGNATNTCTCATCTACTATCTAGCATTTTGCGCGAAGAAAACGACCATATG 300
consensus_188#1      ------------------------------------------------------------
                                                                                 

consensus_188#0      NCCGGAAGGTATGGTNGCTGAGCTCGCTATTCACGAGCATGTANCCTGGGGCCATGGGAG 360
consensus_188#1      ------------------------------------------------------------
                                                                                 

consensus_188#0      GAAAAGCACGCTGATATCTAGAAGGACTAACCAACTAGCGAAACAAGGGAGGANNCCGGT 420
consensus_188#1      ------------------------------------------------------------
                                                                                 

consensus_188#0      ACTACCAAAAGCTCNGAATAATCGACACANGCCCGGATGAAAATGACGCTGGCAGTGACA 480
consensus_188#1      ------------------------------------------------------------
                                                                                 

consensus_188#0      CGTTGCGGAAGGCATGCNCAACTAANAGCCGGTCAACGTNTACGAANACCCATATAGTCT 540
consensus_188#1      ------------------------------------------------------------
                                                                                 

consensus_188#0      GACTTCNAATGTGTACAGCTGCGTTNACTGGCTTTGTAGGTAACCCGATAGATCAATTCT 600
consensus_188#1      ------------------------------------------------------------
                                                                                 

consensus_188#0      ANGTCCCTATCNTGCANAAACGNCTGGTAACAGGTTNGGTGAACCAACGCTGATTCAACA 660
consensus_188#1      ------------------------------------------------------------
                                                                                 

consensus_188#0      AATGAGCAAATATCAACGGAGTNACCCAGAGAGGNGTNAAATAGGCTCTTNACCGGGTAA 720
consensus_188#1      -----------------------------GAAGCCNTCACCTTCCTCTTTCACANCATGC 31
                                                    **   * *  *      ** **    *  

consensus_188#0      CTGAATATTGCCGCGATTNAACGTTGAGTTAATAANATGGGCTTCGTACCATTAAGCTGA 780
consensus_188#1      TGGGATATGCGCTCNTGCTGACGGTGATGGTGTACAATGGATAC---------------- 75
                       * ****   * *      *** ***     **  ****                    

consensus_188#0      CTAGCTGAAGGTACATGTACAAAGAATACATTCCCATTCAAATTNGAAAAAGAAT 835
consensus_188#1      -------------------------------------------------------