|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1889#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1892 fasta sequence
[CGGGATAATAATGGGTTCATCGGGGACAACAGCCCATCGATAGCGGGCCAGTACCGTTGGACTACACCGGCAGCACCGAATGGAGTTCACGTCACCCACGGAGGACTGGCCCTTACTGATGTTGAGCTGGCTGTAGGAGGTAAAACTGTCCCCAGACCAACTCCAGCTACAGGAGAAGATGCGGGACGAGTCCCTACCTCTATAATACCCGAGCCCAATGCCGATCGGGACCAGTGGGGCAAGGGCGTCGAGTTCCTGTTGTCCTGCATTGCCATGTCGGTCGGGTTGGGCAACGTGTGGCGGTTTCCGTTCGTAGCGCTCGAGAACGGAGGCGGCGCGTTCGTGATACCGTACATTATAGTGCTGCTGCTTGTCGGCAAACCCGTCTACTACATGGAGATGATTATCGGACAGTTCTCGAGCCGGGGCAGCGTCGAGGTGTACGATATGGCACCGATCATGCGAGGTGTCGGTTACGGGCAGCTGTTCTCGGTGACCGCTCTAATCACGTACTACTCCTCCCTAATGGCACCAATTGCACGGTACATGATCGACGCGTTCATGTACCCGCTCCCGTGGGCCCACTGTCGCTCGGAATGGCAACCGAACTGCATCGATTCCCTGGCCGGCAGTGCAAGCCCTAATGACAGCTCATCCAATCGCACACTGACCAGTAGTTGGGAGCTTTACTTTACCAAGGTGGTCCTGAAGGAGCTGGATGGCATTGACGATGGAATCGGACTTCCAGATTTGAGACTAACGCTATTCCTGGTCCTATCTTGGTCGCTCGTGTTCCTCACCCTCATAAAAGGTGTTAAAAGCTCCGGCAAAGCGTCCTACTTCCTAGCGCTCTTCCCGTACGTCGTCATGGCGGTGCTGCTTGTCCGCGCTTGCACACTGCCGGGTGCAGTGGACGGTATCGTGTACTTCCTCAAGCCCCAGTGGGACAAAATCTACGACCCGAAGGTGTGGTGCGCCGCCGTCACGCAGTGCTTCTTCTCGCTGTCGATCTGCTTCGGCAACATCATCATGTACTCGTCGTACAACAAGTTCCGGCACAATGTGTACCGCGATGCGACGATCGTGACGTCGATCGATACGTTCACGTCGCTGCTGGCCGGGTGTACAATCTTCGGCATACTGGGACATCTGGCACACGTGACGGGGAAGACGGACGTGGGAAATGTGGTGAAATCCGATGCGGGACTTGCATTTATTTCGTACCCGGAAGCGATCGCAAAGTTCGAGGTGCTGCCGCAAGCATTTTCGGTGCTGTTCTTCCTGATGCTGTTTGTGCTCGGCATCGGCAGCAATGTGGCGATGACGTCGTGCGTGATGACGGTGATAAAGGATCAGTTCCCGCGGGTGCGCAACTGGCAGGCGGCCACGATTATTGCCATCTGTGGCGTGCTGCTCGGTAGCATCTACGTGACGCCGGGCGGTCAGTGTGTGTTGAAGTTGGTGGATTATTACGGCGCCTCATCGATCGCGCTCGTGCTTGCCATTGCTGAGCTGATCGCGATCGGGTGGGTTTACGGCGTGGATCGACTGTGCAAGGACACGGAGTTTATGCTTGGCCATCGGCCCAACCTGTACTGGCGTCTGTGCTGGCGCTGGATCACGCCCCTGCTAATGTTTGTCATTCTCATCTACAACCTTGTCACGCTCGAGCCGCTCATGTACAGGCAGTACGTTTATCCTACGGTCGCTTACGGCATTGGTTGGTGCATTTTTGCCTTTGGGCTTCTGCAGCTTCCGATTTGGGCAGCCTACGCCGTCTACAAGCATAGCGGCAAATCGCTGAACGAGAAAATTAAGAACGCCTTCAAACCGACCGCTGCCTGGGGTCCGATTGATCCTGCCACGCATTACGAGTACAAAAAGTTCATCGA]
[+] EMBL AF543192 [CGGGATAATAATGGGTTCATCGGGGACAACAGCCCATCGATAGCGGGCCAGTACCGTTGGACTACACCGGCAGCACCGAATGGAGTTCACGTCACCCACGGAGGACTGGCCCTTACTGATGTTGAGCTGGCTGTAGGAGGTAAAACTGTCCCCAGACCAACTCCAGCTACAGGAGAAGATGCGGGACGAGTCCCTACCTCTATAATACCCGAGCCCAATGCCGATCGGGACCAGTGGGGCAAGGGCGTCGAGTTCCTGTTGTCCTGCATTGCCATGTCGGTCGGGTTGGGCAACGTGTGGCGGTTTCCGTTCGTAGCGCTCGAGAACGGAGGCGGCGCGTTCGTGATACCGTACATTATAGTGCTGCTGCTTGTCGGCAAACCCGTCTACTACATGGAGATGATTATCGGACAGTTCTCGAGCCGGGGCAGCGTCGAGGTGTACGATATGGCACCGATCATGCGAGGTGTCGGTTACGGGCAGCTGTTCTCGGTGACCGCTCTAATCACGTACTACTCCTCCCTAATGGCACCAATTGCACGGTACATGATCGACGCGTTCATGTACCCGCTCCCGTGGGCCCACTGTCGCTCGGAATGGCAACCGAACTGCATCGATTCCCTGGCCGGCAGTGCAAGCCCTAATGACAGCTCATCCAATCGCACACTGACCAGTAGTTGGGAGCTTTACTTTACCAAGGTGGTCCTGAAGGAGCTGGATGGCATTGACGATGGAATCGGACTTCCAGATTTGAGACTAACGCTATTCCTGGTCCTATCTTGGTCGCTCGTGTTCCTCACCCTCATAAAAGGTGTTAAAAGCTCCGGCAAAGCGTCCTACTTCCTAGCGCTCTTCCCGTACGTCGTCATGGCGGTGCTGCTTGTCCGCGCTTGCACACTGCCGGGTGCAGTGGACGGTATCGTGTACTTCCTCAAGCCCCAGTGGGACAAAATCTACGACCCGAAGGTGTGGTGCGCCGCCGTCACGCAGTGCTTCTTCTCGCTGTCGATCTGCTTCGGCAACATCATCATGTACTCGTCGTACAACAAGTTCCGGCACAATGTGTACCGCGATGCGACGATCGTGACGTCGATCGATACGTTCACGTCGCTGCTGGCCGGGTGTACAATCTTCGGCATACTGGGACATCTGGCACACGTGACGGGGAAGACGGACGTGGGAAATGTGGTGAAATCCGATGCGGGACTTGCATTTATTTCGTACCCGGAAGCGATCGCAAAGTTCGAGGTGCTGCCGCAAGCATTTTCGGTGCTGTTCTTCCTGATGCTGTTTGTGCTCGGCATCGGCAGCAATGTGGCGATGACGTCGTGCGTGATGACGGTGATAAAGGATCAGTTCCCGCGGGTGCGCAACTGGCAGGCGGCCACGATTATTGCCATCTGTGGCGTGCTGCTCGGTAGCATCTACGTGACGCCGGGCGGTCAGTGTGTGTTGAAGTTGGTGGATTATTACGGCGCCTCATCGATCGCGCTCGTGCTTGCCATTGCTGAGCTGATCGCGATCGGGTGGGTTTACGGCGTGGATCGACTGTGCAAGGACACGGAGTTTATGCTTGGCCATCGGCCCAACCTGTACTGGCGTCTGTGCTGGCGCTGGATCACGCCCCTGCTAATGTTTGTCATTCTCATCTACAACCTTGTCACGCTCGAGCCGCTCATGTACAGGCAGTACGTTTATCCTACGGTCGCTTACGGCATTGGTTGGTGCATTTTTGCCTTTGGGCTTCTGCAGCTTCCGATTTGGGCAGCCTACGCCGTCTACAAGCATAGCGGCAAATCGCTGAACGAGAAAATTAAGAACGCCTTCAAACCGACCGCTGCCTGGGGTCCGATTGATCCTGCCACGCATTACGAGTACAAAAAGTTCATCGA]
consensusID : consensus_1889#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 688 fasta sequence
[CCGAACAACTTCTTCTCGCGCACTTGCCAACTCCTCCACCACACCCTACGACCATGGAAGGACGGGATAATAATGGGTTCATCGGGGACAACAGCCCATCGATAGCGGGCCAGTACCGTTGGACTACACCGGCAGCACCGAATGGAGTTCACGTCACCCACGGAGGACTGGCCCTTACTGATGTTGAGCTGGCTGTAGGAGGTAAAACAGTCCCCAGACCAACTCCAGCTACAGGGGAAGATGCGGGACGAGTCCCTACCACCATAATACCCGAGCCCAATGCCGATCGGGACCAGTGGGGCAAGGGCGTCGAGTTCCTGATGTCCTGCATTGCCATGTCGGTCGGGTTGGGCAACGTGTGGCGGTTTCCGTTCGTAGCGCTCGAGAACGGAGGCGGCGCATTCGTGATACCGTACATCATAGTGCTGCTGCTTGTCGGCAAACCCGTCTACTACATGGAGATGATCATCGGACAGTTCTCGAGCCGGGGCAGCGTCAAGGTGTACGATATGGCACCGATCATGCGAGGTAAGTGGAGGCGTCCTTTGGACTTCAGCAATTAGAGAGCTCTTGTAAAATCCTCAACCCAAAATCCTACCACCAAATGTCCCTCCCAGGCGTCGGTTACGGTCAGGTACTGTCGACGACGATCGTCACAACGTACTACGCCTCACTGATGGTGACCACG]
[+] EMBL BM603942 [CCGAACAACTTCTTCTCGCGCACTTGCCAACTCCTCCACCACACCCTACGACCATGGAAGGACGGGATAATAATGGGTTCATCGGGGACAACAGCCCATCGATAGCGGGCCAGTACCGTTGGACTACACCGGCAGCACCGAATGGAGTTCACGTCACCCACGGAGGACTGGCCCTTACTGATGTTGAGCTGGCTGTAGGAGGTAAAACAGTCCCCAGACCAACTCCAGCTACAGGGGAAGATGCGGGACGAGTCCCTACCACCATAATACCCGAGCCCAATGCCGATCGGGACCAGTGGGGCAAGGGCGTCGAGTTCCTGATGTCCTGCATTGCCATGTCGGTCGGGTTGGGCAACGTGTGGCGGTTTCCGTTCGTAGCGCTCGAGAACGGAGGCGGCGCATTCGTGATACCGTACATCATAGTGCTGCTGCTTGTCGGCAAACCCGTCTACTACATGGAGATGATCATCGGACAGTTCTCGAGCCGGGGCAGCGTCAAGGTGTACGATATGGCACCGATCATGCGAGGTAAGTGGAGGCGTCCTTTGGACTTCAGCAATTAGAGAGCTCTTGTAAAATCCTCAACCCAAAATCCTACCACCAAATGTCCCTCCCAGGCGTCGGTTACGGTCAGGTACTGTCGACGACGATCGTCACAACGTACTACGCCTCACTGATGGTGACCACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1889#0 ------------------------------------------------------------
consensus_1889#1 CCGAACAACTTCTTCTCGCGCACTTGCCAACTCCTCCACCACACCCTACGACCATGGAAG 60
consensus_1889#0 --CGGGATAATAATGGGTTCATCGGGGACAACAGCCCATCGATAGCGGGCCAGTACCGTT 58
consensus_1889#1 GACGGGATAATAATGGGTTCATCGGGGACAACAGCCCATCGATAGCGGGCCAGTACCGTT 120
**********************************************************
consensus_1889#0 GGACTACACCGGCAGCACCGAATGGAGTTCACGTCACCCACGGAGGACTGGCCCTTACTG 118
consensus_1889#1 GGACTACACCGGCAGCACCGAATGGAGTTCACGTCACCCACGGAGGACTGGCCCTTACTG 180
************************************************************
consensus_1889#0 ATGTTGAGCTGGCTGTAGGAGGTAAAACTGTCCCCAGACCAACTCCAGCTACAGGAGAAG 178
consensus_1889#1 ATGTTGAGCTGGCTGTAGGAGGTAAAACAGTCCCCAGACCAACTCCAGCTACAGGGGAAG 240
**************************** ************************** ****
consensus_1889#0 ATGCGGGACGAGTCCCTACCTCTATAATACCCGAGCCCAATGCCGATCGGGACCAGTGGG 238
consensus_1889#1 ATGCGGGACGAGTCCCTACCACCATAATACCCGAGCCCAATGCCGATCGGGACCAGTGGG 300
******************** * *************************************
consensus_1889#0 GCAAGGGCGTCGAGTTCCTGTTGTCCTGCATTGCCATGTCGGTCGGGTTGGGCAACGTGT 298
consensus_1889#1 GCAAGGGCGTCGAGTTCCTGATGTCCTGCATTGCCATGTCGGTCGGGTTGGGCAACGTGT 360
******************** ***************************************
consensus_1889#0 GGCGGTTTCCGTTCGTAGCGCTCGAGAACGGAGGCGGCGCGTTCGTGATACCGTACATTA 358
consensus_1889#1 GGCGGTTTCCGTTCGTAGCGCTCGAGAACGGAGGCGGCGCATTCGTGATACCGTACATCA 420
**************************************** ***************** *
consensus_1889#0 TAGTGCTGCTGCTTGTCGGCAAACCCGTCTACTACATGGAGATGATTATCGGACAGTTCT 418
consensus_1889#1 TAGTGCTGCTGCTTGTCGGCAAACCCGTCTACTACATGGAGATGATCATCGGACAGTTCT 480
********************************************** *************
consensus_1889#0 CGAGCCGGGGCAGCGTCGAGGTGTACGATATGGCACCGATCATGCGAGGTGT-CGGTTAC 477
consensus_1889#1 CGAGCCGGGGCAGCGTCAAGGTGTACGATATGGCACCGATCATGCGAGGTAAGTGGAGGC 540
***************** ******************************** ** *
consensus_1889#0 GGGCAGCTGTTCTCGGTGACCGCTCTAATCACGTACTACTCCTCCCTAATGGCACCAATT 537
consensus_1889#1 GTCCTTTGGACTTCAGCAATTAGAGAGCTCTTGTAAAA----TCCTCAAC----CCAAAA 592
* * * ** * * ** *** * *** ** ****
consensus_1889#0 GCACGGTACATGATCGACGCGTTCATGTACCCGCTCCCGTGGGCCCACTGTCGCTCGGAA 597
consensus_1889#1 TCCTACCAC-CAAATGTCCCTCCCAGGCGTCGGTTACGGTCAGGT-ACTGTCGACGACGA 650
* ** * * * * ** * * * * * ** * ******* *
consensus_1889#0 TGGCAACCGAACTGCATCGATTCCCTGGCCGGCAGTGCAAGCCCTAATGACAGCTCATCC 657
consensus_1889#1 TCGTCAC-AACGTACTACGCCTCACTGATGGTGACCACG--------------------- 688
* * ** * * * ** ** *** * * *
consensus_1889#0 AATCGCACACTGACCAGTAGTTGGGAGCTTTACTTTACCAAGGTGGTCCTGAAGGAGCTG 717
consensus_1889#1 ------------------------------------------------------------
consensus_1889#0 GATGGCATTGACGATGGAATCGGACTTCCAGATTTGAGACTAACGCTATTCCTGGTCCTA 777
consensus_1889#1 ------------------------------------------------------------
consensus_1889#0 TCTTGGTCGCTCGTGTTCCTCACCCTCATAAAAGGTGTTAAAAGCTCCGGCAAAGCGTCC 837
consensus_1889#1 ------------------------------------------------------------
consensus_1889#0 TACTTCCTAGCGCTCTTCCCGTACGTCGTCATGGCGGTGCTGCTTGTCCGCGCTTGCACA 897
consensus_1889#1 ------------------------------------------------------------
consensus_1889#0 CTGCCGGGTGCAGTGGACGGTATCGTGTACTTCCTCAAGCCCCAGTGGGACAAAATCTAC 957
consensus_1889#1 ------------------------------------------------------------
consensus_1889#0 GACCCGAAGGTGTGGTGCGCCGCCGTCACGCAGTGCTTCTTCTCGCTGTCGATCTGCTTC 1017
consensus_1889#1 ------------------------------------------------------------
consensus_1889#0 GGCAACATCATCATGTACTCGTCGTACAACAAGTTCCGGCACAATGTGTACCGCGATGCG 1077
consensus_1889#1 ------------------------------------------------------------
consensus_1889#0 ACGATCGTGACGTCGATCGATACGTTCACGTCGCTGCTGGCCGGGTGTACAATCTTCGGC 1137
consensus_1889#1 ------------------------------------------------------------
consensus_1889#0 ATACTGGGACATCTGGCACACGTGACGGGGAAGACGGACGTGGGAAATGTGGTGAAATCC 1197
consensus_1889#1 ------------------------------------------------------------
consensus_1889#0 GATGCGGGACTTGCATTTATTTCGTACCCGGAAGCGATCGCAAAGTTCGAGGTGCTGCCG 1257
consensus_1889#1 ------------------------------------------------------------
consensus_1889#0 CAAGCATTTTCGGTGCTGTTCTTCCTGATGCTGTTTGTGCTCGGCATCGGCAGCAATGTG 1317
consensus_1889#1 ------------------------------------------------------------
consensus_1889#0 GCGATGACGTCGTGCGTGATGACGGTGATAAAGGATCAGTTCCCGCGGGTGCGCAACTGG 1377
consensus_1889#1 ------------------------------------------------------------
consensus_1889#0 CAGGCGGCCACGATTATTGCCATCTGTGGCGTGCTGCTCGGTAGCATCTACGTGACGCCG 1437
consensus_1889#1 ------------------------------------------------------------
consensus_1889#0 GGCGGTCAGTGTGTGTTGAAGTTGGTGGATTATTACGGCGCCTCATCGATCGCGCTCGTG 1497
consensus_1889#1 ------------------------------------------------------------
consensus_1889#0 CTTGCCATTGCTGAGCTGATCGCGATCGGGTGGGTTTACGGCGTGGATCGACTGTGCAAG 1557
consensus_1889#1 ------------------------------------------------------------
consensus_1889#0 GACACGGAGTTTATGCTTGGCCATCGGCCCAACCTGTACTGGCGTCTGTGCTGGCGCTGG 1617
consensus_1889#1 ------------------------------------------------------------
consensus_1889#0 ATCACGCCCCTGCTAATGTTTGTCATTCTCATCTACAACCTTGTCACGCTCGAGCCGCTC 1677
consensus_1889#1 ------------------------------------------------------------
consensus_1889#0 ATGTACAGGCAGTACGTTTATCCTACGGTCGCTTACGGCATTGGTTGGTGCATTTTTGCC 1737
consensus_1889#1 ------------------------------------------------------------
consensus_1889#0 TTTGGGCTTCTGCAGCTTCCGATTTGGGCAGCCTACGCCGTCTACAAGCATAGCGGCAAA 1797
consensus_1889#1 ------------------------------------------------------------
consensus_1889#0 TCGCTGAACGAGAAAATTAAGAACGCCTTCAAACCGACCGCTGCCTGGGGTCCGATTGAT 1857
consensus_1889#1 ------------------------------------------------------------
consensus_1889#0 CCTGCCACGCATTACGAGTACAAAAAGTTCATCGA 1892
consensus_1889#1 -----------------------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||