These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1890#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 781 fasta sequence [CAAGAATCCCCCCGCGGTTATNTCNGGAAAAAAACACGTGTTCGTTTACTTCGTCATACAATACTAGTACTACTATCAAACACATTATTATGCTCCATCAGAGTGGCAGACTGTGGAGCCCTAAAGCTCAAGATTGTTGCGCCTCGAAACGATCAGTTCGTCCATGGTACATCCCATCTACTAGACAGGATATATTATACGCTCACTAATGGGACAGGGCAATAATAGGCAGAAGGGAGCACAATGTTTGCCTATTTTANACACATGCAACTCTATGTAACCGCAATTGAACGNAGTATAAGAAAGCGTTTCAGGTCTACAACAACACACAAACACCCGAAANGCGCACAGCAAGGTCAGCTGTTTGGGCCATCAGGTTGNAACCCCAGCTTTAGCTTACAATCAGCGGTCAAGCGGCTATTGCATCGCTNTATATAGAGTTTTTCCCGTATTATGGTCCTTATATTGCGGAGTAACAGAGAGAGAGAGAGTAGACGTGGACATCGACAATTGCATCTTGGACACATATCATATGCGCCCGCTCATTGGTACAATCATATGCGTGATATAACAATTTCAAACCCCCTTTACACCCACCCAATACAACCTTCTTACNTAAATACCTTNATTCAANGCCAANTAAGATCCACGTCGGACCGGCGTTCGCNACAGTCCGAGCCGCCAGGGCGGAGCAAGCACAACATCTCTTAACCTTGGTANATAAACTATAGNNANATACGCACATTATTTGAGCGCTGATANGACGGTAGATAACANNCTT] [+] EMBL AL694568 [CAAGAATCCCCCCGCGGTTATNTCNGGAAAAAAACACGTGTTCGTTTACTTCGTCATACAATACTAGTACTACTATCAAACACATTATTATGCTCCATCAGAGTGGCAGACTGTGGAGCCCTAAAGCTCAAGATTGTTGCGCCTCGAAACGATCAGTTCGTCCATGGTACATCCCATCTACTAGACAGGATATATTATACGCTCACTAATGGGACAGGGCAATAATAGGCAGAAGGGAGCACAATGTTTGCCTATTTTANACACATGCAACTCTATGTAACCGCAATTGAACGNAGTATAAGAAAGCGTTTCAGGTCTACAACAACACACAAACACCCGAAANGCGCACAGCAAGGTCAGCTGTTTGGGCCATCAGGTTGNAACCCCAGCTTTAGCTTACAATCAGCGGTCAAGCGGCTATTGCATCGCTNTATATAGAGTTTTTCCCGTATTATGGTCCTTATATTGCGGAGTAACAGAGAGAGAGAGAGTAGACGTGGACATCGACAATTGCATCTTGGACACATATCATATGCGCCCGCTCATTGGTACAATCATATGCGTGATATAACAATTTCAAACCCCCTTTACACCCACCCAATACAACCTTCTTACNTAAATACCTTNATTCAANGCCAANTAAGATCCACGTCGGACCGGCGTTCGCNACAGTCCGAGCCGCCAGGGCGGAGCAAGCACAACATCTCTTAACCTTGGTANATAAACTATAGNNANATACGCACATTATTTGAGCGCTGATANGACGGTAGATAACANNCTT] consensusID : consensus_1890#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 696 fasta sequence [CCGTGCGCCTCGAAACGATCAGTTCGTCCATGGTACATCCATCTACTGAAGGATTATTATACGCTCACTAATGGGACAGGGAATAATAGGAGAAGGGAGAAATGTTTGCCTTTTTAAAATGCAACTCTATGTAACAGAATTGAACGAGTATAGAAAGCGTTTAGTTACTAACAGAAGCGAAGAAGGTAGTGTTGGGCATAGTGAACCAGCTAGCTAAATAGGGTAGGGTTTGATCGTTTTGAGTTTTCCGTTTGTCCTATTTGCGAGTAGAGAGAGAGAGAGTAGCGTGGACATCGACAATTGATCTTGGACACATATCATATGCGCCCGCTCATTGGTACATCATATGCGTGATATAACATTTCCACACCCCCTTTCCCACCCCATCCACCTTCTACTAATACTTTATCAAGCAATAGTCAGTGGACGGCTTCGTTTGTCGAGCGCAGGGCGAGCAGCAAATCTTTTTCTTGTTATAAACTTTTTCATACCACATATTGACGCTGATTGTTGTTATACACTTGATTCCTCTTGAGTCTGAATCTGATGTATATGTAATATGCAAATATGTAGACTAAGGGTGTGTGTGTGTGCGGTGCGGTGCGGTGGGTGAGTGCGCCCGCTGCTGGTGTGTGTGTGTTTGTATGTAAAAATTCTGCAACAAGCACACACGCACACGCACACGCACGCAGGCAG] [+] EMBL BM621176 [CCGTGCGCCTCGAAACGATCAGTTCGTCCATGGTACATCCATCTACTGAAGGATTATTATACGCTCACTAATGGGACAGGGAATAATAGGAGAAGGGAGAAATGTTTGCCTTTTTAAAATGCAACTCTATGTAACAGAATTGAACGAGTATAGAAAGCGTTTAGTTACTAACAGAAGCGAAGAAGGTAGTGTTGGGCATAGTGAACCAGCTAGCTAAATAGGGTAGGGTTTGATCGTTTTGAGTTTTCCGTTTGTCCTATTTGCGAGTAGAGAGAGAGAGAGTAGCGTGGACATCGACAATTGATCTTGGACACATATCATATGCGCCCGCTCATTGGTACATCATATGCGTGATATAACATTTCCACACCCCCTTTCCCACCCCATCCACCTTCTACTAATACTTTATCAAGCAATAGTCAGTGGACGGCTTCGTTTGTCGAGCGCAGGGCGAGCAGCAAATCTTTTTCTTGTTATAAACTTTTTCATACCACATATTGACGCTGATTGTTGTTATACACTTGATTCCTCTTGAGTCTGAATCTGATGTATATGTAATATGCAAATATGTAGACTAAGGGTGTGTGTGTGTGCGGTGCGGTGCGGTGGGTGAGTGCGCCCGCTGCTGGTGTGTGTGTGTTTGTATGTAAAAATTCTGCAACAAGCACACACGCACACGCACACGCACGCAGGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1890#0 CAAGAATCCCCCCGCGGTTATNTCNGGAAAAAAACACGTGTTCGTTTACTTCGTCATACA 60 consensus_1890#1 ------------------------------------------------------------ consensus_1890#0 ATACTAGTACTACTATCAAACACATTATTATGCTCCATCAGAGTGGCAGACTGTGGAGCC 120 consensus_1890#1 ------------------------------------------------------------ consensus_1890#0 CTAAAGCTCAAGATTGTTGCGCCTCGAAACGATCAGTTCGTCCATGGTACATCCCATCTA 180 consensus_1890#1 --------------CCGTGCGCCTCGAAACGATCAGTTCGTCCATGGTACATCC-ATCTA 45 ************************************* ***** consensus_1890#0 CTAGACAGGATATATTATACGCTCACTAATGGGACAGGGCAATAATAGGCAGAAGGGAGC 240 consensus_1890#1 CTGAA--GGAT-TATTATACGCTCACTAATGGGACAGGG-AATAATAGG-AGAAGGGAGA 100 ** * **** *************************** ********* ********* consensus_1890#0 ACAATGTTTGCCTATTTTANACACATGCAACTCTATGTAACCGCAATTGAACGNAGTATA 300 consensus_1890#1 A--ATGTTTGCCT-TTTTAAA---ATGCAACTCTATGTAACAG-AATTGAACGA-GTATA 152 * ********** ***** * ***************** * ********* ***** consensus_1890#0 AGAAAGCGTTTCAGGTCTACAACAACACACAAACACCCGAAANGCGCACAGCAAGGTCAG 360 consensus_1890#1 -GAAAGCGTTT--AGTTACTAACAG----------------AAGCG---AAGAAGGTAG- 189 ********** ** **** * *** * ***** consensus_1890#0 CTGTTTGGGCCATCAGGTTGNAACCCCAGCTTTAGCTTACAATCAGCGGTCAAGCGGCTA 420 consensus_1890#1 -TGTTGGG-----CATAGTGAA---CCAGCT--AGCT---AAATAG-GGTAGGG------ 228 **** ** ** ** * ****** **** ** ** *** * consensus_1890#0 TTGCATCGCTNTATATAGAGTTTTTCCCGTATTATGGTCCTTATATTGCGGAGTAACAGA 480 consensus_1890#1 TTTGATCGTTTT-----GAGTTTTCCGTTTGT-------CCTAT-TTGCG----AGTAGA 271 ** **** * * ******* * * * * *** ***** * *** consensus_1890#0 GAGAGAGAGAGTAGACGTGGACATCGACAATTGCATCTTGGACACATATCATATGCGCCC 540 consensus_1890#1 GAGAGAGAGAGTAG-CGTGGACATCGACAATTG-ATCTTGGACACATATCATATGCGCCC 329 ************** ****************** ************************** consensus_1890#0 GCTCATTGGTACAATCATATGCGTGATATAACAATTTCAAACCCCCTTTACACCCACCCA 600 consensus_1890#1 GCTCATTGGTACA-TCATATGCGTGATATAACATTTCCACACCCCCTTT---CCCACCCC 385 ************* ******************* ** ** ********* ******* consensus_1890#0 ATACAACCTTCTTACNTAAATACCTTNATTCAANGCCAANTAAGATCCACGTCGGACCGG 660 consensus_1890#1 AT-CCACCTTCTACTAATACTTTATCAAGCAATAGTCAGTGGACGGCTTCGTTTGTCGAG 444 ** * ******* * * * * * * ** * * *** * * * consensus_1890#0 CGTTCGCNACAGTCCGAGCCGCCAGGGCGGAGCAAGCACAACATCTCTTAACCTTGGTAN 720 consensus_1890#1 CGCAGGGCGAGCAGCAAATCTTTTTCTTGTTATAAACTTTTTCATACCACATATTG--AC 502 ** * * * * * ** * * * *** * consensus_1890#0 ATAAACTATAGNNANATACGCACATTAT-TTGAGCGCTGATANGACG-GTAGATAACANN 778 consensus_1890#1 GCTGATTGTTGTTATACACTTGATTCCTCTTGAGTCTGAATCTGATGTATATGTAATATG 562 * * * * * * ** * * ***** ** ** * ** *** * consensus_1890#0 CTT--------------------------------------------------------- 781 consensus_1890#1 CAAATATGTAGACTAAGGGTGTGTGTGTGTGCGGTGCGGTGCGGTGGGTGAGTGCGCCCG 622 * consensus_1890#0 ------------------------------------------------------------ consensus_1890#1 CTGCTGGTGTGTGTGTGTTTGTATGTAAAAATTCTGCAACAAGCACACACGCACACGCAC 682 consensus_1890#0 -------------- consensus_1890#1 ACGCACGCAGGCAG 696 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||