These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1893#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence [TTATTTATCGGATTCCATGTACTTGAACCCCTCTCTATATATAGAGCATCCTTCCAAGTGTGTTTCGTCGTAAAAGGGAGCGATTTTTGTTTGTTTCTGTCGCAAACCCGTATTTCATGTCCGATTTGATGGAAACACACTGCTGCGGCGAGATGCTGCTGCTGCTGCTGTTGTCTGATTCTTTTCATATGTAGAGCAGCTATCGGGTCAAATGTTGTTGGATAAATGTTAGTTGAAGTAGTTCAAGTCTTCGTTCCCAGTGATTTATTCCCTGATCAACGCGCGTCGTGCTTCGTTCACACCCCCCCCCCCCCCCCCCCACAACAGAACGACGACAGACCACCAAAAGGAGTCATGCGATACGCCGGTTAAGTAGGTAAGTTTACGCTCTCAAAGCAGAGAGAGAGAGAACAGACAACAGGAAGAAATTGAATGTGTGTTACACACGAATATAATGAGTGAATGAAAAAAGTCCTAATTGCAAATAAAACTGATTATTACACTTATTGACCATACTTCGTATTGCTGCTGTACATATACATTTGGGAACTGAAAGAGGGATTATTGGTGGCCATTGGTGATTTATATCCTGNGGCCATCGGCTTTCA] [+] EMBL BX624888 [TTATTTATCGGATTCCATGTACTTGAACCCCTCTCTATATATAGAGCATCCTTCCAAGTGTGTTTCGTCGTAAAAGGGAGCGATTTTTGTTTGTTTCTGTCGCAAACCCGTATTTCATGTCCGATTTGATGGAAACACACTGCTGCGGCGAGATGCTGCTGCTGCTGCTGTTGTCTGATTCTTTTCATATGTAGAGCAGCTATCGGGTCAAATGTTGTTGGATAAATGTTAGTTGAAGTAGTTCAAGTCTTCGTTCCCAGTGATTTATTCCCTGATCAACGCGCGTCGTGCTTCGTTCACACCCCCCCCCCCCCCCCCCCACAACAGAACGACGACAGACCACCAAAAGGAGTCATGCGATACGCCGGTTAAGTAGGTAAGTTTACGCTCTCAAAGCAGAGAGAGAGAGAACAGACAACAGGAAGAAATTGAATGTGTGTTACACACGAATATAATGAGTGAATGAAAAAAGTCCTAATTGCAAATAAAACTGATTATTACACTTATTGACCATACTTCGTATTGCTGCTGTACATATACATTTGGGAACTGAAAGAGGGATTATTGGTGGCCATTGGTGATTTATATCCTGNGGCCATCGGCTTTCA] consensusID : consensus_1893#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 466 fasta sequence [GCAGAATCGCACGAGGTGTAATTGCAAATAAAACTGATTATTACACTTATTGACCATACTTCGTATTGCTGCTGTACATATACATTTGGGAACTGAAAGAGGGATTATTGGTGGCCATTGGTGATTTATATCCTGTGGCCATCGGCTTTCAGCAACTGCTAAACAATACATATAGGGATACAAGAATGATACAAGATGAAAGTGTGTTGCTAGCAACAGCAGAAATAATAAGAACAAGAAAAATCCTTCAACAGTCCGGCCAATCCGACCGGTTTTCCCAAACGAACGGCGCGCTTAAGCTAATCCGAAAGCTCATCGATAAACCTACATTGTTTCATTGCAATTCGTTCAAAAGTTCCCAGAACAAAAACAACATCTTCCTCTCTATCAACAACATCAGGTAAGGTGGTAAAAGCTGTGTACGGACCTGTCGCTATAAAAGTAAGATACTCAAGAGATACAGGAG] [+] EMBL BX469454 [GCAGAATCGCACGAGGTGTAATTGCAAATAAAACTGATTATTACACTTATTGACCATACTTCGTATTGCTGCTGTACATATACATTTGGGAACTGAAAGAGGGATTATTGGTGGCCATTGGTGATTTATATCCTGTGGCCATCGGCTTTCAGCAACTGCTAAACAATACATATAGGGATACAAGAATGATACAAGATGAAAGTGTGTTGCTAGCAACAGCAGAAATAATAAGAACAAGAAAAATCCTTCAACAGTCCGGCCAATCCGACCGGTTTTCCCAAACGAACGGCGCGCTTAAGCTAATCCGAAAGCTCATCGATAAACCTACATTGTTTCATTGCAATTCGTTCAAAAGTTCCCAGAACAAAAACAACATCTTCCTCTCTATCAACAACATCAGGTAAGGTGGTAAAAGCTGTGTACGGACCTGTCGCTATAAAAGTAAGATACTCAAGAGATACAGGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1893#0 TTATTTATCGGATTCCATGTACTTGAACCCCTCTCTATATATAGAGCATCCTTCCAAGTG 60 consensus_1893#1 ------------------------------------------------------------ consensus_1893#0 TGTTTCGTCGTAAAAGGGAGCGATTTTTGTTTGTTTCTGTCGCAAACCCGTATTTCATGT 120 consensus_1893#1 -----------------------------------------GCAGAATCGCACGAGGTGT 19 *** * ** * *** consensus_1893#0 CCGATTTGATGGAAACACACTGCTGCGGCGAGATGCTGCTGCTGCTGCTGTTGTCTGATT 180 consensus_1893#1 A-ATTGCAAATAAAACTGATTATTACACTTATTGACCATACTTCGTATTGCTGC-----T 73 * * **** * * * * * * * * ** ** * consensus_1893#0 CTTTTCATATGTAGAGCAGCTATCGGGTCAAATGTTGTTGGATAAATGTTAGTTGAAGTA 240 consensus_1893#1 GTACATATACATTTGGGAACTGAAAGAGGGATTATTGGTGGCCAT-TGGTGATTTATATC 132 * *** * * * ** * * * *** *** * ** * ** * * consensus_1893#0 GTTCAAGTCTTCGTTCCCAGTGATTTATTCCCTGATCAACGCGCGTCGTGCTTCGTTCAC 300 consensus_1893#1 CTGTGGCCATCGGCTTTCAGCAACTG-----CTAAACAATACATATAGGGATACAAGAAT 187 * * * * *** * * ** * *** * * * * * * * consensus_1893#0 ACCCCCCCCC-----CCCCCCCCCCACAACAGAACGACGACAGACCACCAAAAGGAGTCA 355 consensus_1893#1 GATACAAGATGAAAGTGTGTTGCTAGCAACAGCA-GAAATAATAAGAACAAGAAAAATCC 246 * * ****** * ** * * * *** * * ** consensus_1893#0 TGCGATACGCCGGTTAAGTAGGTAAGTTTACGCTCTCAAAGCAGAGAGAGAGAGAACAGA 415 consensus_1893#1 TTCAACAGTCCGGCCAATCCGACCGGTTTTCCCAAACGAA-CGGCGCGCTTAAGCTAATC 305 * * * * **** ** * **** * * * ** * * * * ** * consensus_1893#0 CAACAGGAAGAAATTGAATGTGTGTTACACACGAATATAATGAGTGAATGAAAAAAGTCC 475 consensus_1893#1 CGAAAGCTCATCGATAAACCTACATTGTTTC--ATTGCAATTCGT-----TCAAAAGTTC 358 * * ** * ** * ** * * *** ** ****** * consensus_1893#0 TAATTGCAAATAAAACTGATTATTACACTTATTGACCATACTTCGTATTGCTG------C 529 consensus_1893#1 CCAGAACAAAAACAAC--ATCTTCCTCTCTATCAACAACATCAGGTAAGGTGGTAAAAGC 416 * **** * *** ** * *** ** * * *** * * * consensus_1893#0 TGTACATATACATTTGGGAACTGAAAGAGGGATTATTGGTGGCCATTGGTGATTTATATC 589 consensus_1893#1 TGTGTACGGACCTGTCGCTA-TAAAAGTAAGATACTCAAGAGATACAGGAG--------- 466 *** * ** * * * * * **** *** * * * ** * consensus_1893#0 CTGNGGCCATCGGCTTTCA 608 consensus_1893#1 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||