cluster # 1893

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Anopheles gambiae
cluster # 1893 cluster # 1893 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1893#0 length = 608 sequences # 1

consensus_1893#1 length = 466 sequences # 1

consensusID : consensus_1893#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 608
fasta sequence

                              [TTATTTATCGGATTCCATGTACTTGAACCCCTCTCTATATATAGAGCATCCTTCCAAGTGTGTTTCGTCGTAAAAGGGAGCGATTTTTGTTTGTTTCTGTCGCAAACCCGTATTTCATGTCCGATTTGATGGAAACACACTGCTGCGGCGAGATGCTGCTGCTGCTGCTGTTGTCTGATTCTTTTCATATGTAGAGCAGCTATCGGGTCAAATGTTGTTGGATAAATGTTAGTTGAAGTAGTTCAAGTCTTCGTTCCCAGTGATTTATTCCCTGATCAACGCGCGTCGTGCTTCGTTCACACCCCCCCCCCCCCCCCCCCACAACAGAACGACGACAGACCACCAAAAGGAGTCATGCGATACGCCGGTTAAGTAGGTAAGTTTACGCTCTCAAAGCAGAGAGAGAGAGAACAGACAACAGGAAGAAATTGAATGTGTGTTACACACGAATATAATGAGTGAATGAAAAAAGTCCTAATTGCAAATAAAACTGATTATTACACTTATTGACCATACTTCGTATTGCTGCTGTACATATACATTTGGGAACTGAAAGAGGGATTATTGGTGGCCATTGGTGATTTATATCCTGNGGCCATCGGCTTTCA]

[+] EMBL BX624888             [TTATTTATCGGATTCCATGTACTTGAACCCCTCTCTATATATAGAGCATCCTTCCAAGTGTGTTTCGTCGTAAAAGGGAGCGATTTTTGTTTGTTTCTGTCGCAAACCCGTATTTCATGTCCGATTTGATGGAAACACACTGCTGCGGCGAGATGCTGCTGCTGCTGCTGTTGTCTGATTCTTTTCATATGTAGAGCAGCTATCGGGTCAAATGTTGTTGGATAAATGTTAGTTGAAGTAGTTCAAGTCTTCGTTCCCAGTGATTTATTCCCTGATCAACGCGCGTCGTGCTTCGTTCACACCCCCCCCCCCCCCCCCCCACAACAGAACGACGACAGACCACCAAAAGGAGTCATGCGATACGCCGGTTAAGTAGGTAAGTTTACGCTCTCAAAGCAGAGAGAGAGAGAACAGACAACAGGAAGAAATTGAATGTGTGTTACACACGAATATAATGAGTGAATGAAAAAAGTCCTAATTGCAAATAAAACTGATTATTACACTTATTGACCATACTTCGTATTGCTGCTGTACATATACATTTGGGAACTGAAAGAGGGATTATTGGTGGCCATTGGTGATTTATATCCTGNGGCCATCGGCTTTCA]




>consensus_1893#0
TTATTTATCGGATTCCATGTACTTGAACCCCTCTCTATATATAGAGCATCCTTCCAAGTG
TGTTTCGTCGTAAAAGGGAGCGATTTTTGTTTGTTTCTGTCGCAAACCCGTATTTCATGT
CCGATTTGATGGAAACACACTGCTGCGGCGAGATGCTGCTGCTGCTGCTGTTGTCTGATT
CTTTTCATATGTAGAGCAGCTATCGGGTCAAATGTTGTTGGATAAATGTTAGTTGAAGTA
GTTCAAGTCTTCGTTCCCAGTGATTTATTCCCTGATCAACGCGCGTCGTGCTTCGTTCAC
ACCCCCCCCCCCCCCCCCCCACAACAGAACGACGACAGACCACCAAAAGGAGTCATGCGA
TACGCCGGTTAAGTAGGTAAGTTTACGCTCTCAAAGCAGAGAGAGAGAGAACAGACAACA
GGAAGAAATTGAATGTGTGTTACACACGAATATAATGAGTGAATGAAAAAAGTCCTAATT
GCAAATAAAACTGATTATTACACTTATTGACCATACTTCGTATTGCTGCTGTACATATAC
ATTTGGGAACTGAAAGAGGGATTATTGGTGGCCATTGGTGATTTATATCCTGNGGCCATC
GGCTTTCA

consensusID : consensus_1893#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 466
fasta sequence

                              [GCAGAATCGCACGAGGTGTAATTGCAAATAAAACTGATTATTACACTTATTGACCATACTTCGTATTGCTGCTGTACATATACATTTGGGAACTGAAAGAGGGATTATTGGTGGCCATTGGTGATTTATATCCTGTGGCCATCGGCTTTCAGCAACTGCTAAACAATACATATAGGGATACAAGAATGATACAAGATGAAAGTGTGTTGCTAGCAACAGCAGAAATAATAAGAACAAGAAAAATCCTTCAACAGTCCGGCCAATCCGACCGGTTTTCCCAAACGAACGGCGCGCTTAAGCTAATCCGAAAGCTCATCGATAAACCTACATTGTTTCATTGCAATTCGTTCAAAAGTTCCCAGAACAAAAACAACATCTTCCTCTCTATCAACAACATCAGGTAAGGTGGTAAAAGCTGTGTACGGACCTGTCGCTATAAAAGTAAGATACTCAAGAGATACAGGAG]

[+] EMBL BX469454             [GCAGAATCGCACGAGGTGTAATTGCAAATAAAACTGATTATTACACTTATTGACCATACTTCGTATTGCTGCTGTACATATACATTTGGGAACTGAAAGAGGGATTATTGGTGGCCATTGGTGATTTATATCCTGTGGCCATCGGCTTTCAGCAACTGCTAAACAATACATATAGGGATACAAGAATGATACAAGATGAAAGTGTGTTGCTAGCAACAGCAGAAATAATAAGAACAAGAAAAATCCTTCAACAGTCCGGCCAATCCGACCGGTTTTCCCAAACGAACGGCGCGCTTAAGCTAATCCGAAAGCTCATCGATAAACCTACATTGTTTCATTGCAATTCGTTCAAAAGTTCCCAGAACAAAAACAACATCTTCCTCTCTATCAACAACATCAGGTAAGGTGGTAAAAGCTGTGTACGGACCTGTCGCTATAAAAGTAAGATACTCAAGAGATACAGGAG]




>consensus_1893#1
GCAGAATCGCACGAGGTGTAATTGCAAATAAAACTGATTATTACACTTATTGACCATACT
TCGTATTGCTGCTGTACATATACATTTGGGAACTGAAAGAGGGATTATTGGTGGCCATTG
GTGATTTATATCCTGTGGCCATCGGCTTTCAGCAACTGCTAAACAATACATATAGGGATA
CAAGAATGATACAAGATGAAAGTGTGTTGCTAGCAACAGCAGAAATAATAAGAACAAGAA
AAATCCTTCAACAGTCCGGCCAATCCGACCGGTTTTCCCAAACGAACGGCGCGCTTAAGC
TAATCCGAAAGCTCATCGATAAACCTACATTGTTTCATTGCAATTCGTTCAAAAGTTCCC
AGAACAAAAACAACATCTTCCTCTCTATCAACAACATCAGGTAAGGTGGTAAAAGCTGTG
TACGGACCTGTCGCTATAAAAGTAAGATACTCAAGAGATACAGGAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1893#0      TTATTTATCGGATTCCATGTACTTGAACCCCTCTCTATATATAGAGCATCCTTCCAAGTG 60
consensus_1893#1      ------------------------------------------------------------
                                                                                  

consensus_1893#0      TGTTTCGTCGTAAAAGGGAGCGATTTTTGTTTGTTTCTGTCGCAAACCCGTATTTCATGT 120
consensus_1893#1      -----------------------------------------GCAGAATCGCACGAGGTGT 19
                                                               *** *  ** *     ***

consensus_1893#0      CCGATTTGATGGAAACACACTGCTGCGGCGAGATGCTGCTGCTGCTGCTGTTGTCTGATT 180
consensus_1893#1      A-ATTGCAAATAAAACTGATTATTACACTTATTGACCATACTTCGTATTGCTGC-----T 73
                          *   *   ****  * *  * *    *    *      *  *  ** **      *

consensus_1893#0      CTTTTCATATGTAGAGCAGCTATCGGGTCAAATGTTGTTGGATAAATGTTAGTTGAAGTA 240
consensus_1893#1      GTACATATACATTTGGGAACTGAAAGAGGGATTATTGGTGGCCAT-TGGTGATTTATATC 132
                       *    ***  *   * * **    *    * * *** ***  *  ** *  ** *  * 

consensus_1893#0      GTTCAAGTCTTCGTTCCCAGTGATTTATTCCCTGATCAACGCGCGTCGTGCTTCGTTCAC 300
consensus_1893#1      CTGTGGCCATCGGCTTTCAGCAACTG-----CTAAACAATACATATAGGGATACAAGAAT 187
                       *       *  * *  ***  * *      ** * ***  *   * * * * *    * 

consensus_1893#0      ACCCCCCCCC-----CCCCCCCCCCACAACAGAACGACGACAGACCACCAAAAGGAGTCA 355
consensus_1893#1      GATACAAGATGAAAGTGTGTTGCTAGCAACAGCA-GAAATAATAAGAACAAGAAAAATCC 246
                          *                 *   ****** * **    * *  * *** *  * ** 

consensus_1893#0      TGCGATACGCCGGTTAAGTAGGTAAGTTTACGCTCTCAAAGCAGAGAGAGAGAGAACAGA 415
consensus_1893#1      TTCAACAGTCCGGCCAATCCGACCGGTTTTCCCAAACGAA-CGGCGCGCTTAAGCTAATC 305
                      * * * *  ****  **   *    **** * *   * ** * * * *    **   *  

consensus_1893#0      CAACAGGAAGAAATTGAATGTGTGTTACACACGAATATAATGAGTGAATGAAAAAAGTCC 475
consensus_1893#1      CGAAAGCTCATCGATAAACCTACATTGTTTC--ATTGCAATTCGT-----TCAAAAGTTC 358
                      * * **        * **  *   **       * *  ***  **       ****** *

consensus_1893#0      TAATTGCAAATAAAACTGATTATTACACTTATTGACCATACTTCGTATTGCTG------C 529
consensus_1893#1      CCAGAACAAAAACAAC--ATCTTCCTCTCTATCAACAACATCAGGTAAGGTGGTAAAAGC 416
                        *   **** * ***  **  *      ***  ** * *    ***  *  *      *

consensus_1893#0      TGTACATATACATTTGGGAACTGAAAGAGGGATTATTGGTGGCCATTGGTGATTTATATC 589
consensus_1893#1      TGTGTACGGACCTGTCGCTA-TAAAAGTAAGATACTCAAGAGATACAGGAG--------- 466
                      ***  *   ** * * *  * * ****   ***  *     *  *  ** *         

consensus_1893#0      CTGNGGCCATCGGCTTTCA 608
consensus_1893#1      -------------------