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Anopheles gambiae
cluster # 1904 cluster # 1904       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1904#0 length = 756 sequences # 1  
consensus_1904#1 length = 570 sequences # 1  

consensusID : consensus_1904#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 756
fasta sequence
                              [AGAGACCGCGCAACCTGACGTGGCCCTGGGCGAAAACAACCAGGTGCCCGATAGCAATCGCATACTGATGGGCGAGTACTGTTCGAATACCGTCGAGGGAGTCTACTTCGTGCCAACAAATCCTGTGCCACCGTTTGCAATGGGCTTCTGAGGAGTTGATGGCGATCAGCAGGCGGTTACTTCATTCTTGCGCTGTGCGAAGAGGCGTACACGATCGCGTACACCGTCGATTGTCGGTTTGTGATGATCTTTGCCACAGTACTGTCTGTTGGATCTATAGTGCGAACTTGCCAATGTGTTGCATTGCACATTAGGACTGGCGCAACGTTCAAACCGGAAAGAGTAAGCGTTAGAATTCATTTAGCTACCTTCACCGTAAAGCTGGTGCAATCTGTGTGGAAGATCTCAAAGGGAAACGCGGAAGATTTCACCTGCCGCCTGCTCTATGCTTACGCTCGATCGACAGCTTTAACACTCGCATAAACTCGCATCAACACAAAAAATGGTCATAAAAATGCATGGAGGGCACCGACGTGTACACGTTTGTCTCATTACCACTGTGACGTTCAGCTGCAAGATCAACGCATGTGCCAAGAACTAAGCACCCAGGGGTGCAATCAAGCAGCCAGTAGTGGGACTATGAATTAACTTAAAGACACAAAAATGGAATGCTAAATCTAACGCATAACTACGTATTATTGGTGATTATCGGGATCATCACGGGGACGAACTCGCTCATGACTTTGCCCCGNTTGG]

[+] EMBL BX622750             [AGAGACCGCGCAACCTGACGTGGCCCTGGGCGAAAACAACCAGGTGCCCGATAGCAATCGCATACTGATGGGCGAGTACTGTTCGAATACCGTCGAGGGAGTCTACTTCGTGCCAACAAATCCTGTGCCACCGTTTGCAATGGGCTTCTGAGGAGTTGATGGCGATCAGCAGGCGGTTACTTCATTCTTGCGCTGTGCGAAGAGGCGTACACGATCGCGTACACCGTCGATTGTCGGTTTGTGATGATCTTTGCCACAGTACTGTCTGTTGGATCTATAGTGCGAACTTGCCAATGTGTTGCATTGCACATTAGGACTGGCGCAACGTTCAAACCGGAAAGAGTAAGCGTTAGAATTCATTTAGCTACCTTCACCGTAAAGCTGGTGCAATCTGTGTGGAAGATCTCAAAGGGAAACGCGGAAGATTTCACCTGCCGCCTGCTCTATGCTTACGCTCGATCGACAGCTTTAACACTCGCATAAACTCGCATCAACACAAAAAATGGTCATAAAAATGCATGGAGGGCACCGACGTGTACACGTTTGTCTCATTACCACTGTGACGTTCAGCTGCAAGATCAACGCATGTGCCAAGAACTAAGCACCCAGGGGTGCAATCAAGCAGCCAGTAGTGGGACTATGAATTAACTTAAAGACACAAAAATGGAATGCTAAATCTAACGCATAACTACGTATTATTGGTGATTATCGGGATCATCACGGGGACGAACTCGCTCATGACTTTGCCCCGNTTGG]


>consensus_1904#0 AGAGACCGCGCAACCTGACGTGGCCCTGGGCGAAAACAACCAGGTGCCCGATAGCAATCG CATACTGATGGGCGAGTACTGTTCGAATACCGTCGAGGGAGTCTACTTCGTGCCAACAAA TCCTGTGCCACCGTTTGCAATGGGCTTCTGAGGAGTTGATGGCGATCAGCAGGCGGTTAC TTCATTCTTGCGCTGTGCGAAGAGGCGTACACGATCGCGTACACCGTCGATTGTCGGTTT GTGATGATCTTTGCCACAGTACTGTCTGTTGGATCTATAGTGCGAACTTGCCAATGTGTT GCATTGCACATTAGGACTGGCGCAACGTTCAAACCGGAAAGAGTAAGCGTTAGAATTCAT TTAGCTACCTTCACCGTAAAGCTGGTGCAATCTGTGTGGAAGATCTCAAAGGGAAACGCG GAAGATTTCACCTGCCGCCTGCTCTATGCTTACGCTCGATCGACAGCTTTAACACTCGCA TAAACTCGCATCAACACAAAAAATGGTCATAAAAATGCATGGAGGGCACCGACGTGTACA CGTTTGTCTCATTACCACTGTGACGTTCAGCTGCAAGATCAACGCATGTGCCAAGAACTA AGCACCCAGGGGTGCAATCAAGCAGCCAGTAGTGGGACTATGAATTAACTTAAAGACACA AAAATGGAATGCTAAATCTAACGCATAACTACGTATTATTGGTGATTATCGGGATCATCA CGGGGACGAACTCGCTCATGACTTTGCCCCGNTTGG



consensusID : consensus_1904#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 570
fasta sequence
                              [CCCCGAGGTTAAAGATCTCAAAGGGAAACGCGGAAGATTTCACCTGCCCGCTGCTCTATGCTTACGCTCGATCGACAGCTTTAACACTCGCATAAACTCGCATCAACACAAAAAATGGTCATAAAAATGCATGGAGGGCACCGACGTGTACACGTTTGTCTCATTACCACTGTGACGTTCAGCTGCAAGATCAACGCATGTGCCAAGAACTAAGCACCCAGGGTGCAATCAAGCAGCCAGTAGTGGGACTATGAATTAACTTAAAGACACAAAACAATGGAATGCTAAATCTAACGCATAACTACGTATTATTGGTGATTTATCGGGATCATCACGGGGACGAACTCGCTCATGACTTTGCCCCGTTTTGGCTCATTTACGATTGCCACACACACACACACTGGACGCACGACGCGAAACGGGGTGGTAATTTGTTCGGCGTGGAAACCCAACTTTTGATCGCCTAGGTTAAGTACACCGTCGAAGCTAAGACGCAGTGGCACGACCTTCACGACCGATGCGANAATAATGTCGGCCAGGATCCGAAAGACTTTACAAAAAACACACGTG]

[+] EMBL AL694636             [CCCCGAGGTTAAAGATCTCAAAGGGAAACGCGGAAGATTTCACCTGCCCGCTGCTCTATGCTTACGCTCGATCGACAGCTTTAACACTCGCATAAACTCGCATCAACACAAAAAATGGTCATAAAAATGCATGGAGGGCACCGACGTGTACACGTTTGTCTCATTACCACTGTGACGTTCAGCTGCAAGATCAACGCATGTGCCAAGAACTAAGCACCCAGGGTGCAATCAAGCAGCCAGTAGTGGGACTATGAATTAACTTAAAGACACAAAACAATGGAATGCTAAATCTAACGCATAACTACGTATTATTGGTGATTTATCGGGATCATCACGGGGACGAACTCGCTCATGACTTTGCCCCGTTTTGGCTCATTTACGATTGCCACACACACACACACTGGACGCACGACGCGAAACGGGGTGGTAATTTGTTCGGCGTGGAAACCCAACTTTTGATCGCCTAGGTTAAGTACACCGTCGAAGCTAAGACGCAGTGGCACGACCTTCACGACCGATGCGANAATAATGTCGGCCAGGATCCGAAAGACTTTACAAAAAACACACGTG]


>consensus_1904#1 CCCCGAGGTTAAAGATCTCAAAGGGAAACGCGGAAGATTTCACCTGCCCGCTGCTCTATG CTTACGCTCGATCGACAGCTTTAACACTCGCATAAACTCGCATCAACACAAAAAATGGTC ATAAAAATGCATGGAGGGCACCGACGTGTACACGTTTGTCTCATTACCACTGTGACGTTC AGCTGCAAGATCAACGCATGTGCCAAGAACTAAGCACCCAGGGTGCAATCAAGCAGCCAG TAGTGGGACTATGAATTAACTTAAAGACACAAAACAATGGAATGCTAAATCTAACGCATA ACTACGTATTATTGGTGATTTATCGGGATCATCACGGGGACGAACTCGCTCATGACTTTG CCCCGTTTTGGCTCATTTACGATTGCCACACACACACACACTGGACGCACGACGCGAAAC GGGGTGGTAATTTGTTCGGCGTGGAAACCCAACTTTTGATCGCCTAGGTTAAGTACACCG TCGAAGCTAAGACGCAGTGGCACGACCTTCACGACCGATGCGANAATAATGTCGGCCAGG ATCCGAAAGACTTTACAAAAAACACACGTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1904#0      AGAGACCGCGCAACCTGACGTGGCCCTGGGCGAAAACAACCAGGTGCCCGATAGCAATCG 60
consensus_1904#1      ------------------------------------------------------------
                                                                                  

consensus_1904#0      CATACTGATGGGCGAGTACTGTTCGAATACCGTCGAGGGAGTCTACTTCGTGCCAACAAA 120
consensus_1904#1      ------------------------------------------------------------
                                                                                  

consensus_1904#0      TCCTGTGCCACCGTTTGCAATGGGCTTCTGAGGAGTTGATGGCGATCAGCAGGCGGTTAC 180
consensus_1904#1      ------------------------------------------------------------
                                                                                  

consensus_1904#0      TTCATTCTTGCGCTGTGCGAAGAGGCGTACACGATCGCGTACACCGTCGATTGTCGGTTT 240
consensus_1904#1      ------------------------------------------------------------
                                                                                  

consensus_1904#0      GTGATGATCTTTGCCACAGTACTGTCTGTTGGATCTATAGTGCGAACTTGCCAATGTGTT 300
consensus_1904#1      ------------------------------------------------------------
                                                                                  

consensus_1904#0      GCATTGCACATTAGGACTGGCGCAACGTTCAAACCGGAAAGAGTAAGCGTTAGAATTCAT 360
consensus_1904#1      ------------------------------------------------------------
                                                                                  

consensus_1904#0      TTAGCTACCTTCACCGTAAAGCTGGTGCAATCTGTGTGGAAGATCTCAAAGGGAAACGCG 420
consensus_1904#1      ----------------------------CCCCGAGGTTAAAGATCTCAAAGGGAAACGCG 32
                                                     *   **  *********************

consensus_1904#0      GAAGATTTCACCTGCCGCCTGCTCTATGCTTACGCTCGATCGACAGCTTTAACACTCGCA 480
consensus_1904#1      GAAGATTTCACCTGCCCGCTGCTCTATGCTTACGCTCGATCGACAGCTTTAACACTCGCA 92
                      ****************  ******************************************

consensus_1904#0      TAAACTCGCATCAACACAAAAAATGGTCATAAAAATGCATGGAGGGCACCGACGTGTACA 540
consensus_1904#1      TAAACTCGCATCAACACAAAAAATGGTCATAAAAATGCATGGAGGGCACCGACGTGTACA 152
                      ************************************************************

consensus_1904#0      CGTTTGTCTCATTACCACTGTGACGTTCAGCTGCAAGATCAACGCATGTGCCAAGAACTA 600
consensus_1904#1      CGTTTGTCTCATTACCACTGTGACGTTCAGCTGCAAGATCAACGCATGTGCCAAGAACTA 212
                      ************************************************************

consensus_1904#0      AGCACCCAGGGGTGCAATCAAGCAGCCAGTAGTGGGACTATGAATTAACTTAAAGACACA 660
consensus_1904#1      AGCACCCAGGG-TGCAATCAAGCAGCCAGTAGTGGGACTATGAATTAACTTAAAGACACA 271
                      *********** ************************************************

consensus_1904#0      AAA--ATGGAATGCTAAATCTAACGCATAACTACGTATTATTGGTGATT-ATCGGGATCA 717
consensus_1904#1      AAACAATGGAATGCTAAATCTAACGCATAACTACGTATTATTGGTGATTTATCGGGATCA 331
                      ***  ******************************************** **********

consensus_1904#0      TCACGGGGACGAACTCGCTCATGACTTTGCCCCGNTTGG--------------------- 756
consensus_1904#1      TCACGGGGACGAACTCGCTCATGACTTTGCCCCGTTTTGGCTCATTTACGATTGCCACAC 391
                      ********************************** ** *                     

consensus_1904#0      ------------------------------------------------------------
consensus_1904#1      ACACACACACTGGACGCACGACGCGAAACGGGGTGGTAATTTGTTCGGCGTGGAAACCCA 451
                                                                                  

consensus_1904#0      ------------------------------------------------------------
consensus_1904#1      ACTTTTGATCGCCTAGGTTAAGTACACCGTCGAAGCTAAGACGCAGTGGCACGACCTTCA 511
                                                                                  

consensus_1904#0      -----------------------------------------------------------
consensus_1904#1      CGACCGATGCGANAATAATGTCGGCCAGGATCCGAAAGACTTTACAAAAAACACACGTG 570
                                                                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)