These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1904#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 756 fasta sequence [AGAGACCGCGCAACCTGACGTGGCCCTGGGCGAAAACAACCAGGTGCCCGATAGCAATCGCATACTGATGGGCGAGTACTGTTCGAATACCGTCGAGGGAGTCTACTTCGTGCCAACAAATCCTGTGCCACCGTTTGCAATGGGCTTCTGAGGAGTTGATGGCGATCAGCAGGCGGTTACTTCATTCTTGCGCTGTGCGAAGAGGCGTACACGATCGCGTACACCGTCGATTGTCGGTTTGTGATGATCTTTGCCACAGTACTGTCTGTTGGATCTATAGTGCGAACTTGCCAATGTGTTGCATTGCACATTAGGACTGGCGCAACGTTCAAACCGGAAAGAGTAAGCGTTAGAATTCATTTAGCTACCTTCACCGTAAAGCTGGTGCAATCTGTGTGGAAGATCTCAAAGGGAAACGCGGAAGATTTCACCTGCCGCCTGCTCTATGCTTACGCTCGATCGACAGCTTTAACACTCGCATAAACTCGCATCAACACAAAAAATGGTCATAAAAATGCATGGAGGGCACCGACGTGTACACGTTTGTCTCATTACCACTGTGACGTTCAGCTGCAAGATCAACGCATGTGCCAAGAACTAAGCACCCAGGGGTGCAATCAAGCAGCCAGTAGTGGGACTATGAATTAACTTAAAGACACAAAAATGGAATGCTAAATCTAACGCATAACTACGTATTATTGGTGATTATCGGGATCATCACGGGGACGAACTCGCTCATGACTTTGCCCCGNTTGG] [+] EMBL BX622750 [AGAGACCGCGCAACCTGACGTGGCCCTGGGCGAAAACAACCAGGTGCCCGATAGCAATCGCATACTGATGGGCGAGTACTGTTCGAATACCGTCGAGGGAGTCTACTTCGTGCCAACAAATCCTGTGCCACCGTTTGCAATGGGCTTCTGAGGAGTTGATGGCGATCAGCAGGCGGTTACTTCATTCTTGCGCTGTGCGAAGAGGCGTACACGATCGCGTACACCGTCGATTGTCGGTTTGTGATGATCTTTGCCACAGTACTGTCTGTTGGATCTATAGTGCGAACTTGCCAATGTGTTGCATTGCACATTAGGACTGGCGCAACGTTCAAACCGGAAAGAGTAAGCGTTAGAATTCATTTAGCTACCTTCACCGTAAAGCTGGTGCAATCTGTGTGGAAGATCTCAAAGGGAAACGCGGAAGATTTCACCTGCCGCCTGCTCTATGCTTACGCTCGATCGACAGCTTTAACACTCGCATAAACTCGCATCAACACAAAAAATGGTCATAAAAATGCATGGAGGGCACCGACGTGTACACGTTTGTCTCATTACCACTGTGACGTTCAGCTGCAAGATCAACGCATGTGCCAAGAACTAAGCACCCAGGGGTGCAATCAAGCAGCCAGTAGTGGGACTATGAATTAACTTAAAGACACAAAAATGGAATGCTAAATCTAACGCATAACTACGTATTATTGGTGATTATCGGGATCATCACGGGGACGAACTCGCTCATGACTTTGCCCCGNTTGG] consensusID : consensus_1904#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 570 fasta sequence [CCCCGAGGTTAAAGATCTCAAAGGGAAACGCGGAAGATTTCACCTGCCCGCTGCTCTATGCTTACGCTCGATCGACAGCTTTAACACTCGCATAAACTCGCATCAACACAAAAAATGGTCATAAAAATGCATGGAGGGCACCGACGTGTACACGTTTGTCTCATTACCACTGTGACGTTCAGCTGCAAGATCAACGCATGTGCCAAGAACTAAGCACCCAGGGTGCAATCAAGCAGCCAGTAGTGGGACTATGAATTAACTTAAAGACACAAAACAATGGAATGCTAAATCTAACGCATAACTACGTATTATTGGTGATTTATCGGGATCATCACGGGGACGAACTCGCTCATGACTTTGCCCCGTTTTGGCTCATTTACGATTGCCACACACACACACACTGGACGCACGACGCGAAACGGGGTGGTAATTTGTTCGGCGTGGAAACCCAACTTTTGATCGCCTAGGTTAAGTACACCGTCGAAGCTAAGACGCAGTGGCACGACCTTCACGACCGATGCGANAATAATGTCGGCCAGGATCCGAAAGACTTTACAAAAAACACACGTG] [+] EMBL AL694636 [CCCCGAGGTTAAAGATCTCAAAGGGAAACGCGGAAGATTTCACCTGCCCGCTGCTCTATGCTTACGCTCGATCGACAGCTTTAACACTCGCATAAACTCGCATCAACACAAAAAATGGTCATAAAAATGCATGGAGGGCACCGACGTGTACACGTTTGTCTCATTACCACTGTGACGTTCAGCTGCAAGATCAACGCATGTGCCAAGAACTAAGCACCCAGGGTGCAATCAAGCAGCCAGTAGTGGGACTATGAATTAACTTAAAGACACAAAACAATGGAATGCTAAATCTAACGCATAACTACGTATTATTGGTGATTTATCGGGATCATCACGGGGACGAACTCGCTCATGACTTTGCCCCGTTTTGGCTCATTTACGATTGCCACACACACACACACTGGACGCACGACGCGAAACGGGGTGGTAATTTGTTCGGCGTGGAAACCCAACTTTTGATCGCCTAGGTTAAGTACACCGTCGAAGCTAAGACGCAGTGGCACGACCTTCACGACCGATGCGANAATAATGTCGGCCAGGATCCGAAAGACTTTACAAAAAACACACGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1904#0 AGAGACCGCGCAACCTGACGTGGCCCTGGGCGAAAACAACCAGGTGCCCGATAGCAATCG 60 consensus_1904#1 ------------------------------------------------------------ consensus_1904#0 CATACTGATGGGCGAGTACTGTTCGAATACCGTCGAGGGAGTCTACTTCGTGCCAACAAA 120 consensus_1904#1 ------------------------------------------------------------ consensus_1904#0 TCCTGTGCCACCGTTTGCAATGGGCTTCTGAGGAGTTGATGGCGATCAGCAGGCGGTTAC 180 consensus_1904#1 ------------------------------------------------------------ consensus_1904#0 TTCATTCTTGCGCTGTGCGAAGAGGCGTACACGATCGCGTACACCGTCGATTGTCGGTTT 240 consensus_1904#1 ------------------------------------------------------------ consensus_1904#0 GTGATGATCTTTGCCACAGTACTGTCTGTTGGATCTATAGTGCGAACTTGCCAATGTGTT 300 consensus_1904#1 ------------------------------------------------------------ consensus_1904#0 GCATTGCACATTAGGACTGGCGCAACGTTCAAACCGGAAAGAGTAAGCGTTAGAATTCAT 360 consensus_1904#1 ------------------------------------------------------------ consensus_1904#0 TTAGCTACCTTCACCGTAAAGCTGGTGCAATCTGTGTGGAAGATCTCAAAGGGAAACGCG 420 consensus_1904#1 ----------------------------CCCCGAGGTTAAAGATCTCAAAGGGAAACGCG 32 * ** ********************* consensus_1904#0 GAAGATTTCACCTGCCGCCTGCTCTATGCTTACGCTCGATCGACAGCTTTAACACTCGCA 480 consensus_1904#1 GAAGATTTCACCTGCCCGCTGCTCTATGCTTACGCTCGATCGACAGCTTTAACACTCGCA 92 **************** ****************************************** consensus_1904#0 TAAACTCGCATCAACACAAAAAATGGTCATAAAAATGCATGGAGGGCACCGACGTGTACA 540 consensus_1904#1 TAAACTCGCATCAACACAAAAAATGGTCATAAAAATGCATGGAGGGCACCGACGTGTACA 152 ************************************************************ consensus_1904#0 CGTTTGTCTCATTACCACTGTGACGTTCAGCTGCAAGATCAACGCATGTGCCAAGAACTA 600 consensus_1904#1 CGTTTGTCTCATTACCACTGTGACGTTCAGCTGCAAGATCAACGCATGTGCCAAGAACTA 212 ************************************************************ consensus_1904#0 AGCACCCAGGGGTGCAATCAAGCAGCCAGTAGTGGGACTATGAATTAACTTAAAGACACA 660 consensus_1904#1 AGCACCCAGGG-TGCAATCAAGCAGCCAGTAGTGGGACTATGAATTAACTTAAAGACACA 271 *********** ************************************************ consensus_1904#0 AAA--ATGGAATGCTAAATCTAACGCATAACTACGTATTATTGGTGATT-ATCGGGATCA 717 consensus_1904#1 AAACAATGGAATGCTAAATCTAACGCATAACTACGTATTATTGGTGATTTATCGGGATCA 331 *** ******************************************** ********** consensus_1904#0 TCACGGGGACGAACTCGCTCATGACTTTGCCCCGNTTGG--------------------- 756 consensus_1904#1 TCACGGGGACGAACTCGCTCATGACTTTGCCCCGTTTTGGCTCATTTACGATTGCCACAC 391 ********************************** ** * consensus_1904#0 ------------------------------------------------------------ consensus_1904#1 ACACACACACTGGACGCACGACGCGAAACGGGGTGGTAATTTGTTCGGCGTGGAAACCCA 451 consensus_1904#0 ------------------------------------------------------------ consensus_1904#1 ACTTTTGATCGCCTAGGTTAAGTACACCGTCGAAGCTAAGACGCAGTGGCACGACCTTCA 511 consensus_1904#0 ----------------------------------------------------------- consensus_1904#1 CGACCGATGCGANAATAATGTCGGCCAGGATCCGAAAGACTTTACAAAAAACACACGTG 570 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||