These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1905#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 503 fasta sequence [CCGCCCACGCGTCCGCGCGACGATTCCACTACAGAAGCAAATTGGCAGCAAAGTAACAACACCGTGTGCGGTTTCGTGTGTAGTTGTGAGCGGCTACTACTATTGTTGTTGGTTGGTACTGTGGAAGCTGAAGGTTTGGCCGACCGACATAAACGGTGGTTGTTTTGCAACAACAACAACAACAACAACAACAACATCAACAGTACACGCAGTAGCAGCAGCAGCAGTAGCAACAGCAGTAACAACAACACAACCAACAACAAGAACAACAACGACAACGGTTGCTGCTACCTTGCATTGCTCACTCTATATATATATATATAATATATACACACACGCATACATTTACAAAATATACAGTCGCCGTTCTCTTTCGACCGTCCCTTGTCTTGTCTGTATGCTGCCCTGGCGCAAGGTTGCTGAGCGGTAGTGCAACCATTGTTTTCCTCTGCAGCATTGGCTGCAAGACGCAGAAAAGGCACCGTCTGCTGCCACGAGCGAGC] [+] EMBL BM611536 [CCGCCCACGCGTCCGCGCGACGATTCCACTACAGAAGCAAATTGGCAGCAAAGTAACAACACCGTGTGCGGTTTCGTGTGTAGTTGTGAGCGGCTACTACTATTGTTGTTGGTTGGTACTGTGGAAGCTGAAGGTTTGGCCGACCGACATAAACGGTGGTTGTTTTGCAACAACAACAACAACAACAACAACAACATCAACAGTACACGCAGTAGCAGCAGCAGCAGTAGCAACAGCAGTAACAACAACACAACCAACAACAAGAACAACAACGACAACGGTTGCTGCTACCTTGCATTGCTCACTCTATATATATATATATAATATATACACACACGCATACATTTACAAAATATACAGTCGCCGTTCTCTTTCGACCGTCCCTTGTCTTGTCTGTATGCTGCCCTGGCGCAAGGTTGCTGAGCGGTAGTGCAACCATTGTTTTCCTCTGCAGCATTGGCTGCAAGACGCAGAAAAGGCACCGTCTGCTGCCACGAGCGAGC] consensusID : consensus_1905#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 212 fasta sequence [GATCAGCAACGGCGCATATCGCAGTGTCTATAATTAGTGCACTGGTGTGCTGTCACGTAGCCCGTAGCTGCTGCCTTCGCGACGATTCCACTACAGAAGCAAATTGGCAGCAAAGTAACAACACCGTGTGCGGTTTCGTGTGTAGTTGTGAGCGGCTACTACTATTGTTGTTGGTTGGTACTGTGGAAGCTGAAGGTTTGGCCGACCGACAT] [+] EMBL BM603752 [GATCAGCAACGGCGCATATCGCAGTGTCTATAATTAGTGCACTGGTGTGCTGTCACGTAGCCCGTAGCTGCTGCCTTCGCGACGATTCCACTACAGAAGCAAATTGGCAGCAAAGTAACAACACCGTGTGCGGTTTCGTGTGTAGTTGTGAGCGGCTACTACTATTGTTGTTGGTTGGTACTGTGGAAGCTGAAGGTTTGGCCGACCGACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1905#0 ------------------------------------------------------------ consensus_1905#1 GATCAGCAACGGCGCATATCGCAGTGTCTATAATTAGTGCACTGGTGTGCTGTCACGTAG 60 consensus_1905#0 -CCGCCCACGC-GTCCGCGCGACGATTCCACTACAGAAGCAAATTGGCAGCAAAGTAACA 58 consensus_1905#1 CCCGTAGCTGCTGCCTTCGCGACGATTCCACTACAGAAGCAAATTGGCAGCAAAGTAACA 120 *** ** * * ******************************************* consensus_1905#0 ACACCGTGTGCGGTTTCGTGTGTAGTTGTGAGCGGCTACTACTATTGTTGTTGGTTGGTA 118 consensus_1905#1 ACACCGTGTGCGGTTTCGTGTGTAGTTGTGAGCGGCTACTACTATTGTTGTTGGTTGGTA 180 ************************************************************ consensus_1905#0 CTGTGGAAGCTGAAGGTTTGGCCGACCGACATAAACGGTGGTTGTTTTGCAACAACAACA 178 consensus_1905#1 CTGTGGAAGCTGAAGGTTTGGCCGACCGACAT---------------------------- 212 ******************************** consensus_1905#0 ACAACAACAACAACAACATCAACAGTACACGCAGTAGCAGCAGCAGCAGTAGCAACAGCA 238 consensus_1905#1 ------------------------------------------------------------ consensus_1905#0 GTAACAACAACACAACCAACAACAAGAACAACAACGACAACGGTTGCTGCTACCTTGCAT 298 consensus_1905#1 ------------------------------------------------------------ consensus_1905#0 TGCTCACTCTATATATATATATATAATATATACACACACGCATACATTTACAAAATATAC 358 consensus_1905#1 ------------------------------------------------------------ consensus_1905#0 AGTCGCCGTTCTCTTTCGACCGTCCCTTGTCTTGTCTGTATGCTGCCCTGGCGCAAGGTT 418 consensus_1905#1 ------------------------------------------------------------ consensus_1905#0 GCTGAGCGGTAGTGCAACCATTGTTTTCCTCTGCAGCATTGGCTGCAAGACGCAGAAAAG 478 consensus_1905#1 ------------------------------------------------------------ consensus_1905#0 GCACCGTCTGCTGCCACGAGCGAGC 503 consensus_1905#1 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||