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Anopheles gambiae
cluster # 1913 cluster # 1913       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1913#0 length = 692 sequences # 1  
consensus_1913#1 length = 592 sequences # 1  

consensusID : consensus_1913#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 692
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGCACATGCCCTTCACCATCCCACATCATCCTCCATGCTGCAGAGCATGCCACCCTTCACCCAGCAGCCGCCCTACAGTCCGCACGCTGCCATGCCGCCCAATCACGCCCTGATGTCCCCACAGCCGCTGGTGCCCAACGCCTCGCAATGCTTGCCGCGTAACAATACTAACCCCCTTGCCGGGCAGGCCGGACTGCCACCGAGCGGTGCCAGTGCGGGACGGTTGCGCTCCAGTGTACGTCCGCTTAACATTAACACGCTTAACAACGCGCTGTACGATGAACAGTCCGGCGGTGGTGGTGGAGGCGTTGCTGCCAGCACGGATGTCGGGCTGGCGAACGAGTACGGCAACACCGGATCGGTCGCACCGAACATGATAAACAATCTGTGCAGCAGCAGCTCGCAGCCGGCTACACCGACCCCGGCCATGGGCCAGCAGCAGCAGCAGCAGCAGCCTCACCACCATCAGCCGCACTCGTCGTCGTCGTTGCGCTTCGGGCAAAACTACAACAATCTCAACAACACCGTTAACAACAACCTGTCCAACGCAAACATGCAGAACAATCACAATCTGTACAGCCAGCAACAGCAACAGCAGCCAGAGTCCTCCTCCCAGCAGCAAACGCAAGCCCTCAACAACCAGGTGCTGCCGGGTGTGAGGGCCAAT]

[+] EMBL BM631604             [CCGCCCACGCGTCCGCCCACGCGTCCGCACATGCCCTTCACCATCCCACATCATCCTCCATGCTGCAGAGCATGCCACCCTTCACCCAGCAGCCGCCCTACAGTCCGCACGCTGCCATGCCGCCCAATCACGCCCTGATGTCCCCACAGCCGCTGGTGCCCAACGCCTCGCAATGCTTGCCGCGTAACAATACTAACCCCCTTGCCGGGCAGGCCGGACTGCCACCGAGCGGTGCCAGTGCGGGACGGTTGCGCTCCAGTGTACGTCCGCTTAACATTAACACGCTTAACAACGCGCTGTACGATGAACAGTCCGGCGGTGGTGGTGGAGGCGTTGCTGCCAGCACGGATGTCGGGCTGGCGAACGAGTACGGCAACACCGGATCGGTCGCACCGAACATGATAAACAATCTGTGCAGCAGCAGCTCGCAGCCGGCTACACCGACCCCGGCCATGGGCCAGCAGCAGCAGCAGCAGCAGCCTCACCACCATCAGCCGCACTCGTCGTCGTCGTTGCGCTTCGGGCAAAACTACAACAATCTCAACAACACCGTTAACAACAACCTGTCCAACGCAAACATGCAGAACAATCACAATCTGTACAGCCAGCAACAGCAACAGCAGCCAGAGTCCTCCTCCCAGCAGCAAACGCAAGCCCTCAACAACCAGGTGCTGCCGGGTGTGAGGGCCAAT]


>consensus_1913#0 CCGCCCACGCGTCCGCCCACGCGTCCGCACATGCCCTTCACCATCCCACATCATCCTCCA TGCTGCAGAGCATGCCACCCTTCACCCAGCAGCCGCCCTACAGTCCGCACGCTGCCATGC CGCCCAATCACGCCCTGATGTCCCCACAGCCGCTGGTGCCCAACGCCTCGCAATGCTTGC CGCGTAACAATACTAACCCCCTTGCCGGGCAGGCCGGACTGCCACCGAGCGGTGCCAGTG CGGGACGGTTGCGCTCCAGTGTACGTCCGCTTAACATTAACACGCTTAACAACGCGCTGT ACGATGAACAGTCCGGCGGTGGTGGTGGAGGCGTTGCTGCCAGCACGGATGTCGGGCTGG CGAACGAGTACGGCAACACCGGATCGGTCGCACCGAACATGATAAACAATCTGTGCAGCA GCAGCTCGCAGCCGGCTACACCGACCCCGGCCATGGGCCAGCAGCAGCAGCAGCAGCAGC CTCACCACCATCAGCCGCACTCGTCGTCGTCGTTGCGCTTCGGGCAAAACTACAACAATC TCAACAACACCGTTAACAACAACCTGTCCAACGCAAACATGCAGAACAATCACAATCTGT ACAGCCAGCAACAGCAACAGCAGCCAGAGTCCTCCTCCCAGCAGCAAACGCAAGCCCTCA ACAACCAGGTGCTGCCGGGTGTGAGGGCCAAT



consensusID : consensus_1913#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 592
fasta sequence
                              [CCGTGCCTCCTCACGCCGCCACCCCGAACACACCGCCCGATCCGATCGTCTTTCAGCACATCATGCAGACGCAGCAGATGCTGATGAACTCGATCACGCAGTGCAATCAGCTGCTGTGGATTCAGCAGCGTGAAATCAACAATCTCAACAATGCGGTCTTGTTGCTCCAGGAGCGCATTCTCGGCACCAACAGCAGCATGCTGCTGCACGAAACCCACGGCCCACCGATGGCGGCCACGTTGATTCGGGCCGAGTCGACGCCACCGAACAACAGCTCGTTGAACGCGTCGAATGCGGCGGCCACCACGGCAAGCAGCATGTACACGCGGGCCCGCTCCGAACAGCCGATGATGTCCCACCAGCAATCCTCTCCCTACCATCACCCCCATGCCCTTCACCATCCCACACCATCCTCCATGCTGCAGAGCATGCCACCCTTCACCCAGCAGCCGCCCTACAGTCCGCACGCTGCCATGCCGCCCAATCACGCCATGATGTCCCCACAGCCGCTGGTGCCCAACGCCTCGCAATGCTTGCCGCGTAACAATACTAACCCCCCTTGCCGGGCAGGCCGGACTGCCACCGAGCGGTG]

[+] EMBL BM603634             [CCGTGCCTCCTCACGCCGCCACCCCGAACACACCGCCCGATCCGATCGTCTTTCAGCACATCATGCAGACGCAGCAGATGCTGATGAACTCGATCACGCAGTGCAATCAGCTGCTGTGGATTCAGCAGCGTGAAATCAACAATCTCAACAATGCGGTCTTGTTGCTCCAGGAGCGCATTCTCGGCACCAACAGCAGCATGCTGCTGCACGAAACCCACGGCCCACCGATGGCGGCCACGTTGATTCGGGCCGAGTCGACGCCACCGAACAACAGCTCGTTGAACGCGTCGAATGCGGCGGCCACCACGGCAAGCAGCATGTACACGCGGGCCCGCTCCGAACAGCCGATGATGTCCCACCAGCAATCCTCTCCCTACCATCACCCCCATGCCCTTCACCATCCCACACCATCCTCCATGCTGCAGAGCATGCCACCCTTCACCCAGCAGCCGCCCTACAGTCCGCACGCTGCCATGCCGCCCAATCACGCCATGATGTCCCCACAGCCGCTGGTGCCCAACGCCTCGCAATGCTTGCCGCGTAACAATACTAACCCCCCTTGCCGGGCAGGCCGGACTGCCACCGAGCGGTG]


>consensus_1913#1 CCGTGCCTCCTCACGCCGCCACCCCGAACACACCGCCCGATCCGATCGTCTTTCAGCACA TCATGCAGACGCAGCAGATGCTGATGAACTCGATCACGCAGTGCAATCAGCTGCTGTGGA TTCAGCAGCGTGAAATCAACAATCTCAACAATGCGGTCTTGTTGCTCCAGGAGCGCATTC TCGGCACCAACAGCAGCATGCTGCTGCACGAAACCCACGGCCCACCGATGGCGGCCACGT TGATTCGGGCCGAGTCGACGCCACCGAACAACAGCTCGTTGAACGCGTCGAATGCGGCGG CCACCACGGCAAGCAGCATGTACACGCGGGCCCGCTCCGAACAGCCGATGATGTCCCACC AGCAATCCTCTCCCTACCATCACCCCCATGCCCTTCACCATCCCACACCATCCTCCATGC TGCAGAGCATGCCACCCTTCACCCAGCAGCCGCCCTACAGTCCGCACGCTGCCATGCCGC CCAATCACGCCATGATGTCCCCACAGCCGCTGGTGCCCAACGCCTCGCAATGCTTGCCGC GTAACAATACTAACCCCCCTTGCCGGGCAGGCCGGACTGCCACCGAGCGGTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1913#0      CCGCCCACGCGTCCGCCCACGCGTCCGCACATGCCCTTCACCATCCCACATCATCCTCCA 60
consensus_1913#1      ------------------------------------------------------------
                                                                                  

consensus_1913#0      TGCTGCAGAGCATGCCACCCTTCACCCAGCAGCCGCCCTACAGTCCGCACGCTGCCATGC 120
consensus_1913#1      ---------CCGTGC--CTCCTCACGCCGCCACC-CCGAACACACCGCCCGATCCGATCG 48
                                * ***  * * **** * **  ** **  ***  **** ** * * **  

consensus_1913#0      CGCCCAATCACGCCCTGATGTCCCCACAGCCGCTGGTGCCCAACGCCTCGCAATGCTTGC 180
consensus_1913#1      TCTTTCAGCACATCATGCAGACGCAGCAGATGCTGATGAACTCGATCACGCAGTGCAATC 108
                            * ***  * **  * * *  ***  **** **  *     * **** ***   *

consensus_1913#0      CGCGTAACAATACTAACCCCCTTGCCGGGCAGGCCGGACTGCCACCGAGCGGTGCCAGTG 240
consensus_1913#1      AGC----TGCTGTGGATTC--------AGCAGCGTGAA--ATCAACAATCT-CAACAATG 153
                       **       *    *  *         ****   * *    ** * * *     ** **

consensus_1913#0      CGGGACGGTTGCGCTCCAGTGTACGTCCGCTTAACATTAACACGCTTAACAACGCGCTGT 300
consensus_1913#1      CGGTCTTGTTG--CTCCAG-GAGCGCATTCTCGGCACCAACA---GCAGCATGCTGCTGC 207
                      ***    ****  ****** *  **    **   **  ****     * **    **** 

consensus_1913#0      ACGATGA--ACAGTCCGGCGGTGGTGGTGGAGGCGTTGCTGCCAGCACGGATGTCGGGCT 358
consensus_1913#1      ACGAAACCCACGGCCCACCGATGGCGGC---CACGTTGATTCGGGCCGAGTCGACG--CC 262
                      ****     ** * **  ** *** **      ***** * *  **   *  * **  * 

consensus_1913#0      GGCGAACGAGTACGGCAACACCGGATCGGTCGCACCGAACATGATAAACAATCTGTGCAG 418
consensus_1913#1      ACCGAAC---------AACAGCTCGTTGAACGCGTCGAATGCGGCGGCCACCACGGCAAG 313
                        *****         **** *   * *  ***  ****   *     **    *   **

consensus_1913#0      CAGCA-GCTCGCAGCCGGCTACACCGACC--CCGGCCATGGGCCAGCAGCAGCAGCAGCA 475
consensus_1913#1      CAGCATGTACACGCGGGCCCGCTCCGAACAGCCGATGATGTCCCACCAGCAATCCTCTCC 373
                      ***** *  * *    * *  * **** *  ***   ***  *** *****       * 

consensus_1913#0      GCAGCCTCACCACCATCAGCCGCACTCGTCGTCGTCGTTGCGCTTCGGGCAAAACTACAA 535
consensus_1913#1      CTACCATCACCCCCATGCCCTTCACCATCCCACACCATCCTCCATGCTGCAGAGC-ATGC 432
                        * * ***** ****   *  ***    *  *  * *    * *   *** * * *   

consensus_1913#0      CAATCTCAACAACACCGTTAACA-ACAACCTGTCCAACGCAAACATGCAGAACAATCACA 594
consensus_1913#1      CACCCTTCACCCAGCAGCCGCCCTACAGTCCGC---ACGCTGCCATGCCGCCCAATCACG 489
                      **  **  **    * *    *  ***  * *    ****   ***** *  ******* 

consensus_1913#0      -------ATCTGTACAGCCAGCAACAGC-AACAGCAGCCAGAGTCCTCCTCCCAGCAGCA 646
consensus_1913#1      CCATGATGTCCCCACAGCCGCTGGTGCCCAACGCCTCGCAATGCTTGCCGCGTAACAATA 549
                              **   ******        * ***  *   **  *    ** *  * **  *

consensus_1913#0      AACGCAAGCCCTCAACAACCAGGTGCTGCCGGGTGTGAGGGCCAAT 692
consensus_1913#1      CTAACCC-CCCTTGCCGGGCAGGCCGGACTGCCACCGAGCGGTG-- 592
                          *   ****   *   ****     * *     *** *     




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)