These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1913#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCACATGCCCTTCACCATCCCACATCATCCTCCATGCTGCAGAGCATGCCACCCTTCACCCAGCAGCCGCCCTACAGTCCGCACGCTGCCATGCCGCCCAATCACGCCCTGATGTCCCCACAGCCGCTGGTGCCCAACGCCTCGCAATGCTTGCCGCGTAACAATACTAACCCCCTTGCCGGGCAGGCCGGACTGCCACCGAGCGGTGCCAGTGCGGGACGGTTGCGCTCCAGTGTACGTCCGCTTAACATTAACACGCTTAACAACGCGCTGTACGATGAACAGTCCGGCGGTGGTGGTGGAGGCGTTGCTGCCAGCACGGATGTCGGGCTGGCGAACGAGTACGGCAACACCGGATCGGTCGCACCGAACATGATAAACAATCTGTGCAGCAGCAGCTCGCAGCCGGCTACACCGACCCCGGCCATGGGCCAGCAGCAGCAGCAGCAGCAGCCTCACCACCATCAGCCGCACTCGTCGTCGTCGTTGCGCTTCGGGCAAAACTACAACAATCTCAACAACACCGTTAACAACAACCTGTCCAACGCAAACATGCAGAACAATCACAATCTGTACAGCCAGCAACAGCAACAGCAGCCAGAGTCCTCCTCCCAGCAGCAAACGCAAGCCCTCAACAACCAGGTGCTGCCGGGTGTGAGGGCCAAT] [+] EMBL BM631604 [CCGCCCACGCGTCCGCCCACGCGTCCGCACATGCCCTTCACCATCCCACATCATCCTCCATGCTGCAGAGCATGCCACCCTTCACCCAGCAGCCGCCCTACAGTCCGCACGCTGCCATGCCGCCCAATCACGCCCTGATGTCCCCACAGCCGCTGGTGCCCAACGCCTCGCAATGCTTGCCGCGTAACAATACTAACCCCCTTGCCGGGCAGGCCGGACTGCCACCGAGCGGTGCCAGTGCGGGACGGTTGCGCTCCAGTGTACGTCCGCTTAACATTAACACGCTTAACAACGCGCTGTACGATGAACAGTCCGGCGGTGGTGGTGGAGGCGTTGCTGCCAGCACGGATGTCGGGCTGGCGAACGAGTACGGCAACACCGGATCGGTCGCACCGAACATGATAAACAATCTGTGCAGCAGCAGCTCGCAGCCGGCTACACCGACCCCGGCCATGGGCCAGCAGCAGCAGCAGCAGCAGCCTCACCACCATCAGCCGCACTCGTCGTCGTCGTTGCGCTTCGGGCAAAACTACAACAATCTCAACAACACCGTTAACAACAACCTGTCCAACGCAAACATGCAGAACAATCACAATCTGTACAGCCAGCAACAGCAACAGCAGCCAGAGTCCTCCTCCCAGCAGCAAACGCAAGCCCTCAACAACCAGGTGCTGCCGGGTGTGAGGGCCAAT] consensusID : consensus_1913#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 592 fasta sequence [CCGTGCCTCCTCACGCCGCCACCCCGAACACACCGCCCGATCCGATCGTCTTTCAGCACATCATGCAGACGCAGCAGATGCTGATGAACTCGATCACGCAGTGCAATCAGCTGCTGTGGATTCAGCAGCGTGAAATCAACAATCTCAACAATGCGGTCTTGTTGCTCCAGGAGCGCATTCTCGGCACCAACAGCAGCATGCTGCTGCACGAAACCCACGGCCCACCGATGGCGGCCACGTTGATTCGGGCCGAGTCGACGCCACCGAACAACAGCTCGTTGAACGCGTCGAATGCGGCGGCCACCACGGCAAGCAGCATGTACACGCGGGCCCGCTCCGAACAGCCGATGATGTCCCACCAGCAATCCTCTCCCTACCATCACCCCCATGCCCTTCACCATCCCACACCATCCTCCATGCTGCAGAGCATGCCACCCTTCACCCAGCAGCCGCCCTACAGTCCGCACGCTGCCATGCCGCCCAATCACGCCATGATGTCCCCACAGCCGCTGGTGCCCAACGCCTCGCAATGCTTGCCGCGTAACAATACTAACCCCCCTTGCCGGGCAGGCCGGACTGCCACCGAGCGGTG] [+] EMBL BM603634 [CCGTGCCTCCTCACGCCGCCACCCCGAACACACCGCCCGATCCGATCGTCTTTCAGCACATCATGCAGACGCAGCAGATGCTGATGAACTCGATCACGCAGTGCAATCAGCTGCTGTGGATTCAGCAGCGTGAAATCAACAATCTCAACAATGCGGTCTTGTTGCTCCAGGAGCGCATTCTCGGCACCAACAGCAGCATGCTGCTGCACGAAACCCACGGCCCACCGATGGCGGCCACGTTGATTCGGGCCGAGTCGACGCCACCGAACAACAGCTCGTTGAACGCGTCGAATGCGGCGGCCACCACGGCAAGCAGCATGTACACGCGGGCCCGCTCCGAACAGCCGATGATGTCCCACCAGCAATCCTCTCCCTACCATCACCCCCATGCCCTTCACCATCCCACACCATCCTCCATGCTGCAGAGCATGCCACCCTTCACCCAGCAGCCGCCCTACAGTCCGCACGCTGCCATGCCGCCCAATCACGCCATGATGTCCCCACAGCCGCTGGTGCCCAACGCCTCGCAATGCTTGCCGCGTAACAATACTAACCCCCCTTGCCGGGCAGGCCGGACTGCCACCGAGCGGTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1913#0 CCGCCCACGCGTCCGCCCACGCGTCCGCACATGCCCTTCACCATCCCACATCATCCTCCA 60 consensus_1913#1 ------------------------------------------------------------ consensus_1913#0 TGCTGCAGAGCATGCCACCCTTCACCCAGCAGCCGCCCTACAGTCCGCACGCTGCCATGC 120 consensus_1913#1 ---------CCGTGC--CTCCTCACGCCGCCACC-CCGAACACACCGCCCGATCCGATCG 48 * *** * * **** * ** ** ** *** **** ** * * ** consensus_1913#0 CGCCCAATCACGCCCTGATGTCCCCACAGCCGCTGGTGCCCAACGCCTCGCAATGCTTGC 180 consensus_1913#1 TCTTTCAGCACATCATGCAGACGCAGCAGATGCTGATGAACTCGATCACGCAGTGCAATC 108 * *** * ** * * * *** **** ** * * **** *** * consensus_1913#0 CGCGTAACAATACTAACCCCCTTGCCGGGCAGGCCGGACTGCCACCGAGCGGTGCCAGTG 240 consensus_1913#1 AGC----TGCTGTGGATTC--------AGCAGCGTGAA--ATCAACAATCT-CAACAATG 153 ** * * * **** * * ** * * * ** ** consensus_1913#0 CGGGACGGTTGCGCTCCAGTGTACGTCCGCTTAACATTAACACGCTTAACAACGCGCTGT 300 consensus_1913#1 CGGTCTTGTTG--CTCCAG-GAGCGCATTCTCGGCACCAACA---GCAGCATGCTGCTGC 207 *** **** ****** * ** ** ** **** * ** **** consensus_1913#0 ACGATGA--ACAGTCCGGCGGTGGTGGTGGAGGCGTTGCTGCCAGCACGGATGTCGGGCT 358 consensus_1913#1 ACGAAACCCACGGCCCACCGATGGCGGC---CACGTTGATTCGGGCCGAGTCGACG--CC 262 **** ** * ** ** *** ** ***** * * ** * * ** * consensus_1913#0 GGCGAACGAGTACGGCAACACCGGATCGGTCGCACCGAACATGATAAACAATCTGTGCAG 418 consensus_1913#1 ACCGAAC---------AACAGCTCGTTGAACGCGTCGAATGCGGCGGCCACCACGGCAAG 313 ***** **** * * * *** **** * ** * ** consensus_1913#0 CAGCA-GCTCGCAGCCGGCTACACCGACC--CCGGCCATGGGCCAGCAGCAGCAGCAGCA 475 consensus_1913#1 CAGCATGTACACGCGGGCCCGCTCCGAACAGCCGATGATGTCCCACCAGCAATCCTCTCC 373 ***** * * * * * * **** * *** *** *** ***** * consensus_1913#0 GCAGCCTCACCACCATCAGCCGCACTCGTCGTCGTCGTTGCGCTTCGGGCAAAACTACAA 535 consensus_1913#1 CTACCATCACCCCCATGCCCTTCACCATCCCACACCATCCTCCATGCTGCAGAGC-ATGC 432 * * ***** **** * *** * * * * * * *** * * * consensus_1913#0 CAATCTCAACAACACCGTTAACA-ACAACCTGTCCAACGCAAACATGCAGAACAATCACA 594 consensus_1913#1 CACCCTTCACCCAGCAGCCGCCCTACAGTCCGC---ACGCTGCCATGCCGCCCAATCACG 489 ** ** ** * * * *** * * **** ***** * ******* consensus_1913#0 -------ATCTGTACAGCCAGCAACAGC-AACAGCAGCCAGAGTCCTCCTCCCAGCAGCA 646 consensus_1913#1 CCATGATGTCCCCACAGCCGCTGGTGCCCAACGCCTCGCAATGCTTGCCGCGTAACAATA 549 ** ****** * *** * ** * ** * * ** * consensus_1913#0 AACGCAAGCCCTCAACAACCAGGTGCTGCCGGGTGTGAGGGCCAAT 692 consensus_1913#1 CTAACCC-CCCTTGCCGGGCAGGCCGGACTGCCACCGAGCGGTG-- 592 * **** * **** * * *** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||