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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1914#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 670 fasta sequence
[TGTGTGTACTATCGTATGCGCTAATTACACGTTTCTGTGAAACTGTACAATTAGCACGGTACACGGTCCATTAAATGTAAACGAAACCCCCTCCCAGACACCAGGACGAGAACGAGGAATGGTAGCAGCAGAATATAGGTACGCACGTCGCTGTAGTAGTAGAAGAAGATGGTAGAAATGTACATGTAATCCCGCCGCGTTGCGTTAAACAAAATCGTCCCTTCACGCTCCACGCTCTCCAGCCCGTTTAATGATACGATACTGTAAATATTATTTTTATTCTGCTGGCAGTTTTACGTAGAAACAAAACAACAAAAAAAGCTTGGAAAACCGCGATGTGTAAAGCGCACCACAAGGAATCATCGAAAAAAAAAGAGGTGAAAAATGTAGGCACAGCAAAACTTTTCGGCTCCCCGTCCAAGGAAGGGTAGAGAGCATTGAGTGAAACACAGTGAAACACAAAAATCAAAACAATAAGTTTTTGTTTTCACTCGCCCTCTCTGAACTCATAAGATCATGTGTTGTGGGCCTAAAGCTCCGCCAAGCCACATCCGCGTGCAGCATGCGANCACGGTAGCGATGTTTTATGCATAGCCCATGTNACCACGTGAACGTAAAGTCACGAGCCCCCAACAAAAAAAAACCCACGTGTGCACGATATAGCATTCGA]
[+] EMBL BX619738 [TGTGTGTACTATCGTATGCGCTAATTACACGTTTCTGTGAAACTGTACAATTAGCACGGTACACGGTCCATTAAATGTAAACGAAACCCCCTCCCAGACACCAGGACGAGAACGAGGAATGGTAGCAGCAGAATATAGGTACGCACGTCGCTGTAGTAGTAGAAGAAGATGGTAGAAATGTACATGTAATCCCGCCGCGTTGCGTTAAACAAAATCGTCCCTTCACGCTCCACGCTCTCCAGCCCGTTTAATGATACGATACTGTAAATATTATTTTTATTCTGCTGGCAGTTTTACGTAGAAACAAAACAACAAAAAAAGCTTGGAAAACCGCGATGTGTAAAGCGCACCACAAGGAATCATCGAAAAAAAAAGAGGTGAAAAATGTAGGCACAGCAAAACTTTTCGGCTCCCCGTCCAAGGAAGGGTAGAGAGCATTGAGTGAAACACAGTGAAACACAAAAATCAAAACAATAAGTTTTTGTTTTCACTCGCCCTCTCTGAACTCATAAGATCATGTGTTGTGGGCCTAAAGCTCCGCCAAGCCACATCCGCGTGCAGCATGCGANCACGGTAGCGATGTTTTATGCATAGCCCATGTNACCACGTGAACGTAAAGTCACGAGCCCCCAACAAAAAAAAACCCACGTGTGCACGATATAGCATTCGA]
consensusID : consensus_1914#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 665 fasta sequence
[AGCAGAATNCCCGAGGTTAACACTGTGTGTACTATCGTATGCGCTAATTACACGTTTCTGTGAAACTGTACAATTAGCACGGTACACGGTCCATTAAATGTANAACGAAACCCCCTCCCAGACACCAGGACGAGAACGAGGAATGGTAGCAGCAGAATATAGTGTACGCACGTACGCTGTAGTAGTAGAAGAAGATGGTAGAAATGTACATGTAATCCCGCCGCGTTGCGTTAAACAAAATCGTCCCTTCACGCTCCACTGCTCTCCAGCCCGTTTAATGATACGATACTGTAAATATTATTTTTATTCTGCTGGCAGTTTTACGTAGAAACAACAACAACNANANCAACAGCTTGGAAAACCGCGATGTGTACAAGCTGCACCACAAGGCAATCNTCGAAGCAACNNAAAAGAGGTGACNCNNATGTNAGGCACATGCAAAACTTTTCGGCTCCCCGTCCAAGNGANGGGTAGAGAGCATTGAGTGAAAACAGCAGATGAAACCACAANAANATCAAANACACATAAGTTATCTGGTATCACTCGCCCCTCTCTTGAAACTCATAAGATCACTTGGTGTACGTGGGCTAAAGCTCCGCCGAGGCCAGCATCCGGNCGGTGCAGCGATTGCGAGCCACGGTACGCGGACTGGTAATATGCANCTA]
[+] EMBL AL932392 [AGCAGAATNCCCGAGGTTAACACTGTGTGTACTATCGTATGCGCTAATTACACGTTTCTGTGAAACTGTACAATTAGCACGGTACACGGTCCATTAAATGTANAACGAAACCCCCTCCCAGACACCAGGACGAGAACGAGGAATGGTAGCAGCAGAATATAGTGTACGCACGTACGCTGTAGTAGTAGAAGAAGATGGTAGAAATGTACATGTAATCCCGCCGCGTTGCGTTAAACAAAATCGTCCCTTCACGCTCCACTGCTCTCCAGCCCGTTTAATGATACGATACTGTAAATATTATTTTTATTCTGCTGGCAGTTTTACGTAGAAACAACAACAACNANANCAACAGCTTGGAAAACCGCGATGTGTACAAGCTGCACCACAAGGCAATCNTCGAAGCAACNNAAAAGAGGTGACNCNNATGTNAGGCACATGCAAAACTTTTCGGCTCCCCGTCCAAGNGANGGGTAGAGAGCATTGAGTGAAAACAGCAGATGAAACCACAANAANATCAAANACACATAAGTTATCTGGTATCACTCGCCCCTCTCTTGAAACTCATAAGATCACTTGGTGTACGTGGGCTAAAGCTCCGCCGAGGCCAGCATCCGGNCGGTGCAGCGATTGCGAGCCACGGTACGCGGACTGGTAATATGCANCTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1914#0 -----------------------TGTGTGTACTATCGTATGCGCTAATTACACGTTTCTG 37
consensus_1914#1 AGCAGAATNCCCGAGGTTAACACTGTGTGTACTATCGTATGCGCTAATTACACGTTTCTG 60
*************************************
consensus_1914#0 TGAAACTGTACAATTAGCACGGTACACGGTCCATTAAATGTAAA-CGAAACCCCCTCCCA 96
consensus_1914#1 TGAAACTGTACAATTAGCACGGTACACGGTCCATTAAATGTANAACGAAACCCCCTCCCA 120
****************************************** * ***************
consensus_1914#0 GACACCAGGACGAGAACGAGGAATGGTAGCAGCAGAATATAG-GTACGCACGT-CGCTGT 154
consensus_1914#1 GACACCAGGACGAGAACGAGGAATGGTAGCAGCAGAATATAGTGTACGCACGTACGCTGT 180
****************************************** ********** ******
consensus_1914#0 AGTAGTAGAAGAAGATGGTAGAAATGTACATGTAATCCCGCCGCGTTGCGTTAAACAAAA 214
consensus_1914#1 AGTAGTAGAAGAAGATGGTAGAAATGTACATGTAATCCCGCCGCGTTGCGTTAAACAAAA 240
************************************************************
consensus_1914#0 TCGTCCCTTCACGCTCCAC-GCTCTCCAGCCCGTTTAATGATACGATACTGTAAATATTA 273
consensus_1914#1 TCGTCCCTTCACGCTCCACTGCTCTCCAGCCCGTTTAATGATACGATACTGTAAATATTA 300
******************* ****************************************
consensus_1914#0 TTTTTATTCTGCTGGCAGTTTTACGTAGAAACAA----AACAACAAAAAAAGCTTGGAAA 329
consensus_1914#1 TTTTTATTCTGCTGGCAGTTTTACGTAGAAACAACAACAACNANANCAACAGCTTGGAAA 360
********************************** *** * * ** **********
consensus_1914#0 ACCGCGATGTGTA-AAGC-GCACCACAAGG-AATCATCGAAA----AAAAAAGAGGTGAA 382
consensus_1914#1 ACCGCGATGTGTACAAGCTGCACCACAAGGCAATCNTCGAAGCAACNNAAAAGAGGTGAC 420
************* **** *********** **** ***** ***********
consensus_1914#0 AAATGT---AGGCACA-GCAAAACTTTTCGGCTCCCCGTCCAAGG-AAGGGTAGAGAGCA 437
consensus_1914#1 NCNNATGTNAGGCACATGCAAAACTTTTCGGCTCCCCGTCCAAGNGANGGGTAGAGAGCA 480
* ******* *************************** * ************
consensus_1914#0 TTGAGTGAAA----CACAGTGAAACACAAAAATC---AAAACA-ATAAGTT-TTTGTTTT 488
consensus_1914#1 TTGAGTGAAAACAGCAGATGAAACCACAANAANATCAAANACACATAAGTTATCTGGTAT 540
********** ** * ** ***** ** ** *** ******* * ** * *
consensus_1914#0 CACTCGCCC---TCTCTGAACTCATAAGATCATGTGTTGTG---GGCCTAAAGCTCCGCC 542
consensus_1914#1 CACTCGCCCCTCTCTTGAAACTCATAAGATCACTTGGTGTACGTGGGCTAAAGCTCCGCC 600
********* *** ************** ** *** ** *************
consensus_1914#0 AAGCC--ACATCCGCGTGCAGCATGCGANCACGGTAGCGATGTTTTATGCATAGCCCATG 600
consensus_1914#1 GAGGCCAGCATCCGGNCGGTGCA-GCGATTGCG--AGCCACGGTACGCGGACTGGTAATA 657
** * ****** * *** **** ** *** * * * * * * **
consensus_1914#0 TNACCACGTGAACGTAAAGTCACGAGCCCCCAACAAAAAAAAACCCACGTGTGCACGATA 660
consensus_1914#1 TG--CANCTA-------------------------------------------------- 665
* ** *
consensus_1914#0 TAGCATTCGA 670
consensus_1914#1 ----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||