cluster # 1916

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Anopheles gambiae
cluster # 1916 cluster # 1916 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1916#0 length = 607 sequences # 1

consensus_1916#1 length = 560 sequences # 1

consensusID : consensus_1916#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 607
fasta sequence

                              [CCGGCAGTTTAGAAAGCGACATGAATCGTTGCTGGCAATGGTGTGCCGTGTTGGTGTTGGTCTATGCTGCCCACTGCCAGGGCTACATCACGACGGGCATGCCGACGCTGATTGAGCGGGACCGGGACCCGGTCGCATCGTTTCCGTACCCGCTGCGGCAGGCACTGGGGCAGCGTCCGTCGCCCCCACCGTACAACGGTACCGAGCAGGAGCCGGGCGACGAGCTCAAGTTCCCGGCAAACTTTCTGTTCGGTGCCGCCACCGCGGCGTACCAAATCGAGGGCGCCTGGAACGTGGACGGCAAGGGCCCGAGCGTGTGGGACACGCTGACCCACACCCATCCGGAGCTGGTAGTGGACGGGGCCACCGGTGACCGGGCGGCCGACTCGTACCGCCTCTACAGAAGCGACGTCGAGGCGCTGGGGAAGGTCGGGTTCAACTACTACCGCTTCTCGATCGCCTGGTCCCGGCTGCTGCCCCGGGGCGACCAGTCCTCCCTCAACCAGGGTGCGGTCCGCTACTACAACGCGCTAATCAACGAGCTGCTGGCGCACGGGATCGAACCGGTCGTGACGATGCTGCACTACGATCTGCCCCAGTACCTGCA]

[+] EMBL BM622616             [CCGGCAGTTTAGAAAGCGACATGAATCGTTGCTGGCAATGGTGTGCCGTGTTGGTGTTGGTCTATGCTGCCCACTGCCAGGGCTACATCACGACGGGCATGCCGACGCTGATTGAGCGGGACCGGGACCCGGTCGCATCGTTTCCGTACCCGCTGCGGCAGGCACTGGGGCAGCGTCCGTCGCCCCCACCGTACAACGGTACCGAGCAGGAGCCGGGCGACGAGCTCAAGTTCCCGGCAAACTTTCTGTTCGGTGCCGCCACCGCGGCGTACCAAATCGAGGGCGCCTGGAACGTGGACGGCAAGGGCCCGAGCGTGTGGGACACGCTGACCCACACCCATCCGGAGCTGGTAGTGGACGGGGCCACCGGTGACCGGGCGGCCGACTCGTACCGCCTCTACAGAAGCGACGTCGAGGCGCTGGGGAAGGTCGGGTTCAACTACTACCGCTTCTCGATCGCCTGGTCCCGGCTGCTGCCCCGGGGCGACCAGTCCTCCCTCAACCAGGGTGCGGTCCGCTACTACAACGCGCTAATCAACGAGCTGCTGGCGCACGGGATCGAACCGGTCGTGACGATGCTGCACTACGATCTGCCCCAGTACCTGCA]




>consensus_1916#0
CCGGCAGTTTAGAAAGCGACATGAATCGTTGCTGGCAATGGTGTGCCGTGTTGGTGTTGG
TCTATGCTGCCCACTGCCAGGGCTACATCACGACGGGCATGCCGACGCTGATTGAGCGGG
ACCGGGACCCGGTCGCATCGTTTCCGTACCCGCTGCGGCAGGCACTGGGGCAGCGTCCGT
CGCCCCCACCGTACAACGGTACCGAGCAGGAGCCGGGCGACGAGCTCAAGTTCCCGGCAA
ACTTTCTGTTCGGTGCCGCCACCGCGGCGTACCAAATCGAGGGCGCCTGGAACGTGGACG
GCAAGGGCCCGAGCGTGTGGGACACGCTGACCCACACCCATCCGGAGCTGGTAGTGGACG
GGGCCACCGGTGACCGGGCGGCCGACTCGTACCGCCTCTACAGAAGCGACGTCGAGGCGC
TGGGGAAGGTCGGGTTCAACTACTACCGCTTCTCGATCGCCTGGTCCCGGCTGCTGCCCC
GGGGCGACCAGTCCTCCCTCAACCAGGGTGCGGTCCGCTACTACAACGCGCTAATCAACG
AGCTGCTGGCGCACGGGATCGAACCGGTCGTGACGATGCTGCACTACGATCTGCCCCAGT
ACCTGCA

consensusID : consensus_1916#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 560
fasta sequence

                              [GAATCGCCCGAGGTTATGCTGGCAAATGGTGTGTCGTGTTGGTGTTGGTTTATGCTGCCCACTGCCAGGCTACATCACGACGGGCATGCCGATGCTGATTGAGCGGGACCGGGACCCGGTCGCATCGTTTCCGTACCCGCTGCGGCAGGCACTGGGGCAGCGTCCTGTCTGCCCCCACCTGTACAACGGTACCTGATGCAGGAGCCTGGGCGACGAGCTCAAGTTTCCGGCAAACTTTCTGTTCGGTGCCGCCACCGCGGCGTACCAAATCGAGGGCGCCTGGAACGTGGACTGGCAAGGGCCCGAGCGTGTGGGACACGCTGACCCAACCCATCCGGAGCTGGTAGTGGACGGGGCCACCGGTGACCTGGGCGGCCGACTCGTACCGCTCTACAGAAGCGACGTCGAGGCGCTGGGGAAGGTCGGGTTCAACTACTACCGTTCTCGATCGCCTGGTCCCGGCTGCTGCCCCGGGGCGACCAGTCCTCCCTCAACCAGGGTGCGGTCCGCTACTACAACGCGCTAATCAACGAGCTGCTGGCGCACGGGATCGAACCGGT]

[+] EMBL AL694699             [GAATCGCCCGAGGTTATGCTGGCAAATGGTGTGTCGTGTTGGTGTTGGTTTATGCTGCCCACTGCCAGGCTACATCACGACGGGCATGCCGATGCTGATTGAGCGGGACCGGGACCCGGTCGCATCGTTTCCGTACCCGCTGCGGCAGGCACTGGGGCAGCGTCCTGTCTGCCCCCACCTGTACAACGGTACCTGATGCAGGAGCCTGGGCGACGAGCTCAAGTTTCCGGCAAACTTTCTGTTCGGTGCCGCCACCGCGGCGTACCAAATCGAGGGCGCCTGGAACGTGGACTGGCAAGGGCCCGAGCGTGTGGGACACGCTGACCCAACCCATCCGGAGCTGGTAGTGGACGGGGCCACCGGTGACCTGGGCGGCCGACTCGTACCGCTCTACAGAAGCGACGTCGAGGCGCTGGGGAAGGTCGGGTTCAACTACTACCGTTCTCGATCGCCTGGTCCCGGCTGCTGCCCCGGGGCGACCAGTCCTCCCTCAACCAGGGTGCGGTCCGCTACTACAACGCGCTAATCAACGAGCTGCTGGCGCACGGGATCGAACCGGT]




>consensus_1916#1
GAATCGCCCGAGGTTATGCTGGCAAATGGTGTGTCGTGTTGGTGTTGGTTTATGCTGCCC
ACTGCCAGGCTACATCACGACGGGCATGCCGATGCTGATTGAGCGGGACCGGGACCCGGT
CGCATCGTTTCCGTACCCGCTGCGGCAGGCACTGGGGCAGCGTCCTGTCTGCCCCCACCT
GTACAACGGTACCTGATGCAGGAGCCTGGGCGACGAGCTCAAGTTTCCGGCAAACTTTCT
GTTCGGTGCCGCCACCGCGGCGTACCAAATCGAGGGCGCCTGGAACGTGGACTGGCAAGG
GCCCGAGCGTGTGGGACACGCTGACCCAACCCATCCGGAGCTGGTAGTGGACGGGGCCAC
CGGTGACCTGGGCGGCCGACTCGTACCGCTCTACAGAAGCGACGTCGAGGCGCTGGGGAA
GGTCGGGTTCAACTACTACCGTTCTCGATCGCCTGGTCCCGGCTGCTGCCCCGGGGCGAC
CAGTCCTCCCTCAACCAGGGTGCGGTCCGCTACTACAACGCGCTAATCAACGAGCTGCTG
GCGCACGGGATCGAACCGGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1916#0      CCGGCAGTTTAGAAAGCGACATGAATCGTTGCTGGCAA-TGGTGTGCCGTGTTGGTGTTG 59
consensus_1916#1      -------------GAATCGCCCGAGGTTATGCTGGCAAATGGTGTGTCGTGTTGGTGTTG 47
                                    *    *  **     ********* ******* *************

consensus_1916#0      GTCTATGCTGCCCACTGCCAGGGCTACATCACGACGGGCATGCCGACGCTGATTGAGCGG 119
consensus_1916#1      GTTTATGCTGCCCACTGCCAGG-CTACATCACGACGGGCATGCCGATGCTGATTGAGCGG 106
                      ** ******************* *********************** *************

consensus_1916#0      GACCGGGACCCGGTCGCATCGTTTCCGTACCCGCTGCGGCAGGCACTGGGGCAGCGTCC- 178
consensus_1916#1      GACCGGGACCCGGTCGCATCGTTTCCGTACCCGCTGCGGCAGGCACTGGGGCAGCGTCCT 166
                      *********************************************************** 

consensus_1916#0      GTC-GCCCCCACC-GTACAACGGTACCGA--GCAGGAGCC-GGGCGACGAGCTCAAGTTC 233
consensus_1916#1      GTCTGCCCCCACCTGTACAACGGTACCTGATGCAGGAGCCTGGGCGACGAGCTCAAGTTT 226
                      *** ********* *************    ********* ****************** 

consensus_1916#0      CCGGCAAACTTTCTGTTCGGTGCCGCCACCGCGGCGTACCAAATCGAGGGCGCCTGGAAC 293
consensus_1916#1      CCGGCAAACTTTCTGTTCGGTGCCGCCACCGCGGCGTACCAAATCGAGGGCGCCTGGAAC 286
                      ************************************************************

consensus_1916#0      GTGGAC-GGCAAGGGCCCGAGCGTGTGGGACACGCTGACCCACACCCATCCGGAGCTGGT 352
consensus_1916#1      GTGGACTGGCAAGGGCCCGAGCGTGTGGGACACGCTGACCCA-ACCCATCCGGAGCTGGT 345
                      ****** *********************************** *****************

consensus_1916#0      AGTGGACGGGGCCACCGGTGACC-GGGCGGCCGACTCGTACCGCCTCTACAGAAGCGACG 411
consensus_1916#1      AGTGGACGGGGCCACCGGTGACCTGGGCGGCCGACTCGTACCGC-TCTACAGAAGCGACG 404
                      *********************** ******************** ***************

consensus_1916#0      TCGAGGCGCTGGGGAAGGTCGGGTTCAACTACTACCGCTTCTCGATCGCCTGGTCCCGGC 471
consensus_1916#1      TCGAGGCGCTGGGGAAGGTCGGGTTCAACTACTACCG-TTCTCGATCGCCTGGTCCCGGC 463
                      ************************************* **********************

consensus_1916#0      TGCTGCCCCGGGGCGACCAGTCCTCCCTCAACCAGGGTGCGGTCCGCTACTACAACGCGC 531
consensus_1916#1      TGCTGCCCCGGGGCGACCAGTCCTCCCTCAACCAGGGTGCGGTCCGCTACTACAACGCGC 523
                      ************************************************************

consensus_1916#0      TAATCAACGAGCTGCTGGCGCACGGGATCGAACCGGTCGTGACGATGCTGCACTACGATC 591
consensus_1916#1      TAATCAACGAGCTGCTGGCGCACGGGATCGAACCGGT----------------------- 560
                      *************************************                       

consensus_1916#0      TGCCCCAGTACCTGCA 607
consensus_1916#1      ----------------