These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1918#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [CCGGCTCCATGCATGCTCCAATGCTATTATTTAGTTATGCCTAAATGCGTTTAAACATGCGTCTGTTTGCCATTTTATAAGAGCACAAACAATAACAATATTCGCTCGACACACGTTCCTTTAGCATCCTTCTACACGGAGTATACTTAAGTTATACTAATCCTGCTCAGCGCACGTACATGCATACACAGCCAACACAGTTTATGGTGGTGGTTTATGGAGTTTAATCGCTTGGCGACAGCCCCCAAGGATACGCCTACTATGCGTGCACTAGCGCATGCACTATGTACTGTCTGTTTGCGTCCCAATTTTCTTACAATTGTCATATTTCCATCCGATGTTTTATTCGTTATCTCCTGATTGTGTTTGTGTTTTTTTTTCCTCATGTTCATAGTAACGCATGCATTGATAGTGTATCTACAAAGCGATTCTTTGTAGAAAGAGTGAGAAAATCTATCGGAAAAACGTAATCTATCGGGTGGATGTGGATATACACAACTACCCAAAGCAAAAAATAAGAAATAAGTGATAGCAAAAAAATAGAAATGATTTATCATTGCTGCTGCTTCACGATGGTTCTTTCCCACCTGTCGTCAACTGTCTAGTGTTGCATGATGTGGGGATCGCGTACACGCACTACGAGCTTCTAATCAATTCGTGGTATCCATTACTGGGGGGAATTTTGGCGCATT] [+] EMBL BM650851 [CCGGCTCCATGCATGCTCCAATGCTATTATTTAGTTATGCCTAAATGCGTTTAAACATGCGTCTGTTTGCCATTTTATAAGAGCACAAACAATAACAATATTCGCTCGACACACGTTCCTTTAGCATCCTTCTACACGGAGTATACTTAAGTTATACTAATCCTGCTCAGCGCACGTACATGCATACACAGCCAACACAGTTTATGGTGGTGGTTTATGGAGTTTAATCGCTTGGCGACAGCCCCCAAGGATACGCCTACTATGCGTGCACTAGCGCATGCACTATGTACTGTCTGTTTGCGTCCCAATTTTCTTACAATTGTCATATTTCCATCCGATGTTTTATTCGTTATCTCCTGATTGTGTTTGTGTTTTTTTTTCCTCATGTTCATAGTAACGCATGCATTGATAGTGTATCTACAAAGCGATTCTTTGTAGAAAGAGTGAGAAAATCTATCGGAAAAACGTAATCTATCGGGTGGATGTGGATATACACAACTACCCAAAGCAAAAAATAAGAAATAAGTGATAGCAAAAAAATAGAAATGATTTATCATTGCTGCTGCTTCACGATGGTTCTTTCCCACCTGTCGTCAACTGTCTAGTGTTGCATGATGTGGGGATCGCGTACACGCACTACGAGCTTCTAATCAATTCGTGGTATCCATTACTGGGGGGAATTTTGGCGCATT] consensusID : consensus_1918#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [GTGGTGTAATCGCTTGGCGACAGCCCCCAAGGGTACGCCTACTATGCCTGCACTAGCACATGCACTATGTTTCTGTTTGCGTCCAAATTTTCTTACAATTGCCATATTTCCATCCGATGTTTTATTCGTTATCTCCTGATTGTGTTTGTGGATGTGTATGTGTGTGTGTNTGTGTTTTTTTTCTTCATGTTCATAGTAACGCATGCATTGATAGTGTATCTACAAAGCGATTCTTTGTAGAAAGAGTGAGAAAATCTATCGGAAAANCGTATGTCGGGTGGATATAACACAACTACCCAAAGCAAAACATAAGAAATAAGTGATGGCAAAACATAGAAATGATTGATCATTGCTGCTGCTTCACGATGGTTCTTTCCCACCTGTCGTCAACTGTCTAGAGTTGGATGATGTGGTGTCGCGTACACGCACTACGAGCTTCTAATTAATTCGTGGTAACCATTACTGTGTGAATTTTGGCACATTCGACCTGTACATAGCTTCGTTCGTCCAATACAAATAGTGTCAGCAATCGATAAGTCCATAATCTTACAGTGCACGTGCATCCTGTAGTACGAGTACCGGAATGCNATAGCAGAGATCGTAGGGG] [+] EMBL BX620496 [GTGGTGTAATCGCTTGGCGACAGCCCCCAAGGGTACGCCTACTATGCCTGCACTAGCACATGCACTATGTTTCTGTTTGCGTCCAAATTTTCTTACAATTGCCATATTTCCATCCGATGTTTTATTCGTTATCTCCTGATTGTGTTTGTGGATGTGTATGTGTGTGTGTNTGTGTTTTTTTTCTTCATGTTCATAGTAACGCATGCATTGATAGTGTATCTACAAAGCGATTCTTTGTAGAAAGAGTGAGAAAATCTATCGGAAAANCGTATGTCGGGTGGATATAACACAACTACCCAAAGCAAAACATAAGAAATAAGTGATGGCAAAACATAGAAATGATTGATCATTGCTGCTGCTTCACGATGGTTCTTTCCCACCTGTCGTCAACTGTCTAGAGTTGGATGATGTGGTGTCGCGTACACGCACTACGAGCTTCTAATTAATTCGTGGTAACCATTACTGTGTGAATTTTGGCACATTCGACCTGTACATAGCTTCGTTCGTCCAATACAAATAGTGTCAGCAATCGATAAGTCCATAATCTTACAGTGCACGTGCATCCTGTAGTACGAGTACCGGAATGCNATAGCAGAGATCGTAGGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1918#0 CCGGCTCCATGCATGCTCCAATGCTATTATTTAGTTATGCCTAAATGCGTTTAAACATGC 60 consensus_1918#1 ------------------------------------------------------------ consensus_1918#0 GTCTGTTTGCCATTTTATAAGAGCACAAACAATAACAATATTCGCTCGACACACGTTCCT 120 consensus_1918#1 ------------------------------------------------------------ consensus_1918#0 TTAGCATCCTTCTACACGGAGTATACTTAAGTTATACTAATCCTGCTCAGCGCACGTACA 180 consensus_1918#1 ------------------------------------------------------------ consensus_1918#0 TGCATACACAGCCAACACAGTTTATGGTGGTGGTTTATGGAGTTTAATCGCTTGGCGACA 240 consensus_1918#1 --------------------------------------GTGGTGTAATCGCTTGGCGACA 22 * ** **************** consensus_1918#0 GCCCCCAAGGATACGCCTACTATGCGTGCACTAGCGCATGCACTATGTACTGTCTGTTTG 300 consensus_1918#1 GCCCCCAAGGGTACGCCTACTATGCCTGCACTAGCACATGCACTATGT---TTCTGTTTG 79 ********** ************** ********* ************ ******** consensus_1918#0 CGTCCCAATTTTCTTACAATTGTCATATTTCCATCCGATGTTTTATTCGTTATCTCCTGA 360 consensus_1918#1 CGTCCAAATTTTCTTACAATTGCCATATTTCCATCCGATGTTTTATTCGTTATCTCCTGA 139 ***** **************** ************************************* consensus_1918#0 TTGTGTTTGTGT-----------------------TTTTTTTTCCTCATGTTCATAGTAA 397 consensus_1918#1 TTGTGTTTGTGGATGTGTATGTGTGTGTGTNTGTGTTTTTTTTCTTCATGTTCATAGTAA 199 *********** ********* *************** consensus_1918#0 CGCATGCATTGATAGTGTATCTACAAAGCGATTCTTTGTAGAAAGAGTGAGAAAATCTAT 457 consensus_1918#1 CGCATGCATTGATAGTGTATCTACAAAGCGATTCTTTGTAGAAAGAGTGAGAAAATCTAT 259 ************************************************************ consensus_1918#0 CGGAAAAACGTAATCTATCGGGTGGATGTGGATATACACAACTACCCAAAGCAAAAAATA 517 consensus_1918#1 CGGAAAANCGTA---TGTCGGGTGGATATA-----ACACAACTACCCAAAGCAAAACATA 311 ******* **** * ********** * ********************* *** consensus_1918#0 AGAAATAAGTGATAGCAAAAAAATAGAAATGATTTATCATTGCTGCTGCTTCACGATGGT 577 consensus_1918#1 AGAAATAAGTGATGGCAAAACA-TAGAAATGATTGATCATTGCTGCTGCTTCACGATGGT 370 ************* ****** * *********** ************************* consensus_1918#0 TCTTTCCCACCTGTCGTCAACTGTCTAGTGTTGCATGATGTGGGGATCGCGTACACGCAC 637 consensus_1918#1 TCTTTCCCACCTGTCGTCAACTGTCTAGAGTTGGATGATGTGGTG-TCGCGTACACGCAC 429 **************************** **** ********* * ************** consensus_1918#0 TACGAGCTTCTAATCAATTCGTGGTATCCATTACTGGGGGGAATTTTGGCGCATT----- 692 consensus_1918#1 TACGAGCTTCTAATTAATTCGTGGTAACCATTACTGTGTG-AATTTTGGCACATTCGACC 488 ************** *********** ********* * * ********* **** consensus_1918#0 ------------------------------------------------------------ consensus_1918#1 TGTACATAGCTTCGTTCGTCCAATACAAATAGTGTCAGCAATCGATAAGTCCATAATCTT 548 consensus_1918#0 ----------------------------------------------------------- consensus_1918#1 ACAGTGCACGTGCATCCTGTAGTACGAGTACCGGAATGCNATAGCAGAGATCGTAGGGG 607 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||