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Anopheles gambiae
cluster # 1918 cluster # 1918       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1918#0 length = 692 sequences # 1  
consensus_1918#1 length = 607 sequences # 1  

consensusID : consensus_1918#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 692
fasta sequence
                              [CCGGCTCCATGCATGCTCCAATGCTATTATTTAGTTATGCCTAAATGCGTTTAAACATGCGTCTGTTTGCCATTTTATAAGAGCACAAACAATAACAATATTCGCTCGACACACGTTCCTTTAGCATCCTTCTACACGGAGTATACTTAAGTTATACTAATCCTGCTCAGCGCACGTACATGCATACACAGCCAACACAGTTTATGGTGGTGGTTTATGGAGTTTAATCGCTTGGCGACAGCCCCCAAGGATACGCCTACTATGCGTGCACTAGCGCATGCACTATGTACTGTCTGTTTGCGTCCCAATTTTCTTACAATTGTCATATTTCCATCCGATGTTTTATTCGTTATCTCCTGATTGTGTTTGTGTTTTTTTTTCCTCATGTTCATAGTAACGCATGCATTGATAGTGTATCTACAAAGCGATTCTTTGTAGAAAGAGTGAGAAAATCTATCGGAAAAACGTAATCTATCGGGTGGATGTGGATATACACAACTACCCAAAGCAAAAAATAAGAAATAAGTGATAGCAAAAAAATAGAAATGATTTATCATTGCTGCTGCTTCACGATGGTTCTTTCCCACCTGTCGTCAACTGTCTAGTGTTGCATGATGTGGGGATCGCGTACACGCACTACGAGCTTCTAATCAATTCGTGGTATCCATTACTGGGGGGAATTTTGGCGCATT]

[+] EMBL BM650851             [CCGGCTCCATGCATGCTCCAATGCTATTATTTAGTTATGCCTAAATGCGTTTAAACATGCGTCTGTTTGCCATTTTATAAGAGCACAAACAATAACAATATTCGCTCGACACACGTTCCTTTAGCATCCTTCTACACGGAGTATACTTAAGTTATACTAATCCTGCTCAGCGCACGTACATGCATACACAGCCAACACAGTTTATGGTGGTGGTTTATGGAGTTTAATCGCTTGGCGACAGCCCCCAAGGATACGCCTACTATGCGTGCACTAGCGCATGCACTATGTACTGTCTGTTTGCGTCCCAATTTTCTTACAATTGTCATATTTCCATCCGATGTTTTATTCGTTATCTCCTGATTGTGTTTGTGTTTTTTTTTCCTCATGTTCATAGTAACGCATGCATTGATAGTGTATCTACAAAGCGATTCTTTGTAGAAAGAGTGAGAAAATCTATCGGAAAAACGTAATCTATCGGGTGGATGTGGATATACACAACTACCCAAAGCAAAAAATAAGAAATAAGTGATAGCAAAAAAATAGAAATGATTTATCATTGCTGCTGCTTCACGATGGTTCTTTCCCACCTGTCGTCAACTGTCTAGTGTTGCATGATGTGGGGATCGCGTACACGCACTACGAGCTTCTAATCAATTCGTGGTATCCATTACTGGGGGGAATTTTGGCGCATT]


>consensus_1918#0 CCGGCTCCATGCATGCTCCAATGCTATTATTTAGTTATGCCTAAATGCGTTTAAACATGC GTCTGTTTGCCATTTTATAAGAGCACAAACAATAACAATATTCGCTCGACACACGTTCCT TTAGCATCCTTCTACACGGAGTATACTTAAGTTATACTAATCCTGCTCAGCGCACGTACA TGCATACACAGCCAACACAGTTTATGGTGGTGGTTTATGGAGTTTAATCGCTTGGCGACA GCCCCCAAGGATACGCCTACTATGCGTGCACTAGCGCATGCACTATGTACTGTCTGTTTG CGTCCCAATTTTCTTACAATTGTCATATTTCCATCCGATGTTTTATTCGTTATCTCCTGA TTGTGTTTGTGTTTTTTTTTCCTCATGTTCATAGTAACGCATGCATTGATAGTGTATCTA CAAAGCGATTCTTTGTAGAAAGAGTGAGAAAATCTATCGGAAAAACGTAATCTATCGGGT GGATGTGGATATACACAACTACCCAAAGCAAAAAATAAGAAATAAGTGATAGCAAAAAAA TAGAAATGATTTATCATTGCTGCTGCTTCACGATGGTTCTTTCCCACCTGTCGTCAACTG TCTAGTGTTGCATGATGTGGGGATCGCGTACACGCACTACGAGCTTCTAATCAATTCGTG GTATCCATTACTGGGGGGAATTTTGGCGCATT



consensusID : consensus_1918#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 607
fasta sequence
                              [GTGGTGTAATCGCTTGGCGACAGCCCCCAAGGGTACGCCTACTATGCCTGCACTAGCACATGCACTATGTTTCTGTTTGCGTCCAAATTTTCTTACAATTGCCATATTTCCATCCGATGTTTTATTCGTTATCTCCTGATTGTGTTTGTGGATGTGTATGTGTGTGTGTNTGTGTTTTTTTTCTTCATGTTCATAGTAACGCATGCATTGATAGTGTATCTACAAAGCGATTCTTTGTAGAAAGAGTGAGAAAATCTATCGGAAAANCGTATGTCGGGTGGATATAACACAACTACCCAAAGCAAAACATAAGAAATAAGTGATGGCAAAACATAGAAATGATTGATCATTGCTGCTGCTTCACGATGGTTCTTTCCCACCTGTCGTCAACTGTCTAGAGTTGGATGATGTGGTGTCGCGTACACGCACTACGAGCTTCTAATTAATTCGTGGTAACCATTACTGTGTGAATTTTGGCACATTCGACCTGTACATAGCTTCGTTCGTCCAATACAAATAGTGTCAGCAATCGATAAGTCCATAATCTTACAGTGCACGTGCATCCTGTAGTACGAGTACCGGAATGCNATAGCAGAGATCGTAGGGG]

[+] EMBL BX620496             [GTGGTGTAATCGCTTGGCGACAGCCCCCAAGGGTACGCCTACTATGCCTGCACTAGCACATGCACTATGTTTCTGTTTGCGTCCAAATTTTCTTACAATTGCCATATTTCCATCCGATGTTTTATTCGTTATCTCCTGATTGTGTTTGTGGATGTGTATGTGTGTGTGTNTGTGTTTTTTTTCTTCATGTTCATAGTAACGCATGCATTGATAGTGTATCTACAAAGCGATTCTTTGTAGAAAGAGTGAGAAAATCTATCGGAAAANCGTATGTCGGGTGGATATAACACAACTACCCAAAGCAAAACATAAGAAATAAGTGATGGCAAAACATAGAAATGATTGATCATTGCTGCTGCTTCACGATGGTTCTTTCCCACCTGTCGTCAACTGTCTAGAGTTGGATGATGTGGTGTCGCGTACACGCACTACGAGCTTCTAATTAATTCGTGGTAACCATTACTGTGTGAATTTTGGCACATTCGACCTGTACATAGCTTCGTTCGTCCAATACAAATAGTGTCAGCAATCGATAAGTCCATAATCTTACAGTGCACGTGCATCCTGTAGTACGAGTACCGGAATGCNATAGCAGAGATCGTAGGGG]


>consensus_1918#1 GTGGTGTAATCGCTTGGCGACAGCCCCCAAGGGTACGCCTACTATGCCTGCACTAGCACA TGCACTATGTTTCTGTTTGCGTCCAAATTTTCTTACAATTGCCATATTTCCATCCGATGT TTTATTCGTTATCTCCTGATTGTGTTTGTGGATGTGTATGTGTGTGTGTNTGTGTTTTTT TTCTTCATGTTCATAGTAACGCATGCATTGATAGTGTATCTACAAAGCGATTCTTTGTAG AAAGAGTGAGAAAATCTATCGGAAAANCGTATGTCGGGTGGATATAACACAACTACCCAA AGCAAAACATAAGAAATAAGTGATGGCAAAACATAGAAATGATTGATCATTGCTGCTGCT TCACGATGGTTCTTTCCCACCTGTCGTCAACTGTCTAGAGTTGGATGATGTGGTGTCGCG TACACGCACTACGAGCTTCTAATTAATTCGTGGTAACCATTACTGTGTGAATTTTGGCAC ATTCGACCTGTACATAGCTTCGTTCGTCCAATACAAATAGTGTCAGCAATCGATAAGTCC ATAATCTTACAGTGCACGTGCATCCTGTAGTACGAGTACCGGAATGCNATAGCAGAGATC GTAGGGG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1918#0      CCGGCTCCATGCATGCTCCAATGCTATTATTTAGTTATGCCTAAATGCGTTTAAACATGC 60
consensus_1918#1      ------------------------------------------------------------
                                                                                  

consensus_1918#0      GTCTGTTTGCCATTTTATAAGAGCACAAACAATAACAATATTCGCTCGACACACGTTCCT 120
consensus_1918#1      ------------------------------------------------------------
                                                                                  

consensus_1918#0      TTAGCATCCTTCTACACGGAGTATACTTAAGTTATACTAATCCTGCTCAGCGCACGTACA 180
consensus_1918#1      ------------------------------------------------------------
                                                                                  

consensus_1918#0      TGCATACACAGCCAACACAGTTTATGGTGGTGGTTTATGGAGTTTAATCGCTTGGCGACA 240
consensus_1918#1      --------------------------------------GTGGTGTAATCGCTTGGCGACA 22
                                                            *  ** ****************

consensus_1918#0      GCCCCCAAGGATACGCCTACTATGCGTGCACTAGCGCATGCACTATGTACTGTCTGTTTG 300
consensus_1918#1      GCCCCCAAGGGTACGCCTACTATGCCTGCACTAGCACATGCACTATGT---TTCTGTTTG 79
                      ********** ************** ********* ************    ********

consensus_1918#0      CGTCCCAATTTTCTTACAATTGTCATATTTCCATCCGATGTTTTATTCGTTATCTCCTGA 360
consensus_1918#1      CGTCCAAATTTTCTTACAATTGCCATATTTCCATCCGATGTTTTATTCGTTATCTCCTGA 139
                      ***** **************** *************************************

consensus_1918#0      TTGTGTTTGTGT-----------------------TTTTTTTTCCTCATGTTCATAGTAA 397
consensus_1918#1      TTGTGTTTGTGGATGTGTATGTGTGTGTGTNTGTGTTTTTTTTCTTCATGTTCATAGTAA 199
                      ***********                        ********* ***************

consensus_1918#0      CGCATGCATTGATAGTGTATCTACAAAGCGATTCTTTGTAGAAAGAGTGAGAAAATCTAT 457
consensus_1918#1      CGCATGCATTGATAGTGTATCTACAAAGCGATTCTTTGTAGAAAGAGTGAGAAAATCTAT 259
                      ************************************************************

consensus_1918#0      CGGAAAAACGTAATCTATCGGGTGGATGTGGATATACACAACTACCCAAAGCAAAAAATA 517
consensus_1918#1      CGGAAAANCGTA---TGTCGGGTGGATATA-----ACACAACTACCCAAAGCAAAACATA 311
                      ******* ****   * ********** *      ********************* ***

consensus_1918#0      AGAAATAAGTGATAGCAAAAAAATAGAAATGATTTATCATTGCTGCTGCTTCACGATGGT 577
consensus_1918#1      AGAAATAAGTGATGGCAAAACA-TAGAAATGATTGATCATTGCTGCTGCTTCACGATGGT 370
                      ************* ****** * *********** *************************

consensus_1918#0      TCTTTCCCACCTGTCGTCAACTGTCTAGTGTTGCATGATGTGGGGATCGCGTACACGCAC 637
consensus_1918#1      TCTTTCCCACCTGTCGTCAACTGTCTAGAGTTGGATGATGTGGTG-TCGCGTACACGCAC 429
                      **************************** **** ********* * **************

consensus_1918#0      TACGAGCTTCTAATCAATTCGTGGTATCCATTACTGGGGGGAATTTTGGCGCATT----- 692
consensus_1918#1      TACGAGCTTCTAATTAATTCGTGGTAACCATTACTGTGTG-AATTTTGGCACATTCGACC 488
                      ************** *********** ********* * * ********* ****     

consensus_1918#0      ------------------------------------------------------------
consensus_1918#1      TGTACATAGCTTCGTTCGTCCAATACAAATAGTGTCAGCAATCGATAAGTCCATAATCTT 548
                                                                                  

consensus_1918#0      -----------------------------------------------------------
consensus_1918#1      ACAGTGCACGTGCATCCTGTAGTACGAGTACCGGAATGCNATAGCAGAGATCGTAGGGG 607
                                                                                 




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)