cluster # 1931

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Anopheles gambiae
cluster # 1931 cluster # 1931 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1931#0 length = 888 sequences # 1

consensus_1931#1 length = 366 sequences # 1

consensusID : consensus_1931#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 888
fasta sequence

                              [CAGAATCCCCCCGAGGTTNGTGGCGTGAGCATGTAGTTCATTACATACGTTAGCCTTGATCGATTGAGTGACATTATGCGCATATGTAACCACTTTATGAATTGTTCCTTGCATTAGCATTATAAAACTTCTGTTTTAATCAAGCAATCGATTGCTTTTAGTCAATTTATGTAATACTGGACTTCAAAAACGGAAGAAGAGTTGCCAGCATCCCGGCAACACGTTGTAGGCAGCTAGCTGGGCAGCAAGAAAACAAAAAATACCAGTTCCTTCAATGTTCGTAGGAACATCATCGATAAGCTTAATTCGGAACAAAAATCACATGACAAACTGATACATCCCTAACAACAACAACGAGCGTAGGTTCATAATNAANAGACTGCTTNAGTGGGAGAACCGGCACTTTATCCAATTCTAATTTTCTTTAACTTTTATACGCTGTCACAAATTTTGCCGAGCAATGCCCTTCACCGAACATGCANAGACTTTCTCTCCTCAACNATGAGCGCAANNCATAATTTGCNANAGATATACTACACANTTTACTTCTGATAAGGGACAACTGCGCTGCGGTATACAGCCTTCCTCTGNCCCCCCCCTCTAACACCCCGCGGCGGCCCTGGACTAACAATCACAATAGGTCGNAAACAAACAGGCCCCAACCAACCGGCAATCAGGGNAAAAACAGGCTAGCCCACCCAACACACCNGCAACCCACACCACACGANACCCCCCTCGCCAACCAGAACAAACAGANTCCCGCTNCANCGNCCCANTACACCACANNGCACCCCCAANAACGGGANCCCTTCACAANNCACCACNGCCACACCTNCCCGCACTCTGGCCCACGCGGACACCCAGGCACCCCCGCGCGCACCTGGCCCA]

[+] EMBL AL694781             [CAGAATCCCCCCGAGGTTNGTGGCGTGAGCATGTAGTTCATTACATACGTTAGCCTTGATCGATTGAGTGACATTATGCGCATATGTAACCACTTTATGAATTGTTCCTTGCATTAGCATTATAAAACTTCTGTTTTAATCAAGCAATCGATTGCTTTTAGTCAATTTATGTAATACTGGACTTCAAAAACGGAAGAAGAGTTGCCAGCATCCCGGCAACACGTTGTAGGCAGCTAGCTGGGCAGCAAGAAAACAAAAAATACCAGTTCCTTCAATGTTCGTAGGAACATCATCGATAAGCTTAATTCGGAACAAAAATCACATGACAAACTGATACATCCCTAACAACAACAACGAGCGTAGGTTCATAATNAANAGACTGCTTNAGTGGGAGAACCGGCACTTTATCCAATTCTAATTTTCTTTAACTTTTATACGCTGTCACAAATTTTGCCGAGCAATGCCCTTCACCGAACATGCANAGACTTTCTCTCCTCAACNATGAGCGCAANNCATAATTTGCNANAGATATACTACACANTTTACTTCTGATAAGGGACAACTGCGCTGCGGTATACAGCCTTCCTCTGNCCCCCCCCTCTAACACCCCGCGGCGGCCCTGGACTAACAATCACAATAGGTCGNAAACAAACAGGCCCCAACCAACCGGCAATCAGGGNAAAAACAGGCTAGCCCACCCAACACACCNGCAACCCACACCACACGANACCCCCCTCGCCAACCAGAACAAACAGANTCCCGCTNCANCGNCCCANTACACCACANNGCACCCCCAANAACGGGANCCCTTCACAANNCACCACNGCCACACCTNCCCGCACTCTGGCCCACGCGGACACCCAGGCACCCCCGCGCGCACCTGGCCCA]




>consensus_1931#0
CAGAATCCCCCCGAGGTTNGTGGCGTGAGCATGTAGTTCATTACATACGTTAGCCTTGAT
CGATTGAGTGACATTATGCGCATATGTAACCACTTTATGAATTGTTCCTTGCATTAGCAT
TATAAAACTTCTGTTTTAATCAAGCAATCGATTGCTTTTAGTCAATTTATGTAATACTGG
ACTTCAAAAACGGAAGAAGAGTTGCCAGCATCCCGGCAACACGTTGTAGGCAGCTAGCTG
GGCAGCAAGAAAACAAAAAATACCAGTTCCTTCAATGTTCGTAGGAACATCATCGATAAG
CTTAATTCGGAACAAAAATCACATGACAAACTGATACATCCCTAACAACAACAACGAGCG
TAGGTTCATAATNAANAGACTGCTTNAGTGGGAGAACCGGCACTTTATCCAATTCTAATT
TTCTTTAACTTTTATACGCTGTCACAAATTTTGCCGAGCAATGCCCTTCACCGAACATGC
ANAGACTTTCTCTCCTCAACNATGAGCGCAANNCATAATTTGCNANAGATATACTACACA
NTTTACTTCTGATAAGGGACAACTGCGCTGCGGTATACAGCCTTCCTCTGNCCCCCCCCT
CTAACACCCCGCGGCGGCCCTGGACTAACAATCACAATAGGTCGNAAACAAACAGGCCCC
AACCAACCGGCAATCAGGGNAAAAACAGGCTAGCCCACCCAACACACCNGCAACCCACAC
CACACGANACCCCCCTCGCCAACCAGAACAAACAGANTCCCGCTNCANCGNCCCANTACA
CCACANNGCACCCCCAANAACGGGANCCCTTCACAANNCACCACNGCCACACCTNCCCGC
ACTCTGGCCCACGCGGACACCCAGGCACCCCCGCGCGCACCTGGCCCA

consensusID : consensus_1931#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 366
fasta sequence

                              [TCGCCGAGNGNTGTGCGCGTGAGTGTGTGTGTGTGTGCGTGTGGAATGGTGATCGTCGTGAGCACAATGTTCAGCGAACTTAATAATTTATTACGTCTCTTTGGGTGCCTTCTACCATTCATTCCAAATTTATTCGTAAGAAAACGTTGCTAATTTTACGTTGTGGCGTGAGCATGTAGTTCATTACATACGTTAGCCTTGATCGATTGAGTGACATTATGCGCATATGTAACCACTTTATGAATTGTTCCTTGCATTAGCATTATAAAACTTCTGTTTTAATCAAGCAATCGATTGCTTTTAGTCAAATTTATGTAATACTGGACTTCAAAAACGGAAGAAGAGTTGCCAGCATCCCGGCAACAC]

[+] EMBL AL932631             [TCGCCGAGNGNTGTGCGCGTGAGTGTGTGTGTGTGTGCGTGTGGAATGGTGATCGTCGTGAGCACAATGTTCAGCGAACTTAATAATTTATTACGTCTCTTTGGGTGCCTTCTACCATTCATTCCAAATTTATTCGTAAGAAAACGTTGCTAATTTTACGTTGTGGCGTGAGCATGTAGTTCATTACATACGTTAGCCTTGATCGATTGAGTGACATTATGCGCATATGTAACCACTTTATGAATTGTTCCTTGCATTAGCATTATAAAACTTCTGTTTTAATCAAGCAATCGATTGCTTTTAGTCAAATTTATGTAATACTGGACTTCAAAAACGGAAGAAGAGTTGCCAGCATCCCGGCAACAC]




>consensus_1931#1
TCGCCGAGNGNTGTGCGCGTGAGTGTGTGTGTGTGTGCGTGTGGAATGGTGATCGTCGTG
AGCACAATGTTCAGCGAACTTAATAATTTATTACGTCTCTTTGGGTGCCTTCTACCATTC
ATTCCAAATTTATTCGTAAGAAAACGTTGCTAATTTTACGTTGTGGCGTGAGCATGTAGT
TCATTACATACGTTAGCCTTGATCGATTGAGTGACATTATGCGCATATGTAACCACTTTA
TGAATTGTTCCTTGCATTAGCATTATAAAACTTCTGTTTTAATCAAGCAATCGATTGCTT
TTAGTCAAATTTATGTAATACTGGACTTCAAAAACGGAAGAAGAGTTGCCAGCATCCCGG
CAACAC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1931#0      ------------------------------------------------------------
consensus_1931#1      TCGCCGAGNGNTGTGCGCGTGAGTGTGTGTGTGTGTGCGTGTGGAATGGTGATCGTCGTG 60
                                                                                  

consensus_1931#0      ------------------------------------------------------------
consensus_1931#1      AGCACAATGTTCAGCGAACTTAATAATTTATTACGTCTCTTTGGGTGCCTTCTACCATTC 120
                                                                                  

consensus_1931#0      -------------------CAGAATCCCCCCGAGGTTN----GTGGCGTGAGCATGTAGT 37
consensus_1931#1      ATTCCAAATTTATTCGTAAGAAAACGTTGCTAATTTTACGTTGTGGCGTGAGCATGTAGT 180
                                          * **     *  *  **     ******************

consensus_1931#0      TCATTACATACGTTAGCCTTGATCGATTGAGTGACATTATGCGCATATGTAACCACTTTA 97
consensus_1931#1      TCATTACATACGTTAGCCTTGATCGATTGAGTGACATTATGCGCATATGTAACCACTTTA 240
                      ************************************************************

consensus_1931#0      TGAATTGTTCCTTGCATTAGCATTATAAAACTTCTGTTTTAATCAAGCAATCGATTGCTT 157
consensus_1931#1      TGAATTGTTCCTTGCATTAGCATTATAAAACTTCTGTTTTAATCAAGCAATCGATTGCTT 300
                      ************************************************************

consensus_1931#0      TTAGTCAA-TTTATGTAATACTGGACTTCAAAAACGGAAGAAGAGTTGCCAGCATCCCGG 216
consensus_1931#1      TTAGTCAAATTTATGTAATACTGGACTTCAAAAACGGAAGAAGAGTTGCCAGCATCCCGG 360
                      ******** ***************************************************

consensus_1931#0      CAACACGTTGTAGGCAGCTAGCTGGGCAGCAAGAAAACAAAAAATACCAGTTCCTTCAAT 276
consensus_1931#1      CAACAC------------------------------------------------------ 366
                      ******                                                      

consensus_1931#0      GTTCGTAGGAACATCATCGATAAGCTTAATTCGGAACAAAAATCACATGACAAACTGATA 336
consensus_1931#1      ------------------------------------------------------------
                                                                                  

consensus_1931#0      CATCCCTAACAACAACAACGAGCGTAGGTTCATAATNAANAGACTGCTTNAGTGGGAGAA 396
consensus_1931#1      ------------------------------------------------------------
                                                                                  

consensus_1931#0      CCGGCACTTTATCCAATTCTAATTTTCTTTAACTTTTATACGCTGTCACAAATTTTGCCG 456
consensus_1931#1      ------------------------------------------------------------
                                                                                  

consensus_1931#0      AGCAATGCCCTTCACCGAACATGCANAGACTTTCTCTCCTCAACNATGAGCGCAANNCAT 516
consensus_1931#1      ------------------------------------------------------------
                                                                                  

consensus_1931#0      AATTTGCNANAGATATACTACACANTTTACTTCTGATAAGGGACAACTGCGCTGCGGTAT 576
consensus_1931#1      ------------------------------------------------------------
                                                                                  

consensus_1931#0      ACAGCCTTCCTCTGNCCCCCCCCTCTAACACCCCGCGGCGGCCCTGGACTAACAATCACA 636
consensus_1931#1      ------------------------------------------------------------
                                                                                  

consensus_1931#0      ATAGGTCGNAAACAAACAGGCCCCAACCAACCGGCAATCAGGGNAAAAACAGGCTAGCCC 696
consensus_1931#1      ------------------------------------------------------------
                                                                                  

consensus_1931#0      ACCCAACACACCNGCAACCCACACCACACGANACCCCCCTCGCCAACCAGAACAAACAGA 756
consensus_1931#1      ------------------------------------------------------------
                                                                                  

consensus_1931#0      NTCCCGCTNCANCGNCCCANTACACCACANNGCACCCCCAANAACGGGANCCCTTCACAA 816
consensus_1931#1      ------------------------------------------------------------
                                                                                  

consensus_1931#0      NNCACCACNGCCACACCTNCCCGCACTCTGGCCCACGCGGACACCCAGGCACCCCCGCGC 876
consensus_1931#1      ------------------------------------------------------------
                                                                                  

consensus_1931#0      GCACCTGGCCCA 888
consensus_1931#1      ------------