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Anopheles gambiae
cluster # 1931 cluster # 1931       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1931#0 length = 888 sequences # 1  
consensus_1931#1 length = 366 sequences # 1  

consensusID : consensus_1931#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 888
fasta sequence
                              [CAGAATCCCCCCGAGGTTNGTGGCGTGAGCATGTAGTTCATTACATACGTTAGCCTTGATCGATTGAGTGACATTATGCGCATATGTAACCACTTTATGAATTGTTCCTTGCATTAGCATTATAAAACTTCTGTTTTAATCAAGCAATCGATTGCTTTTAGTCAATTTATGTAATACTGGACTTCAAAAACGGAAGAAGAGTTGCCAGCATCCCGGCAACACGTTGTAGGCAGCTAGCTGGGCAGCAAGAAAACAAAAAATACCAGTTCCTTCAATGTTCGTAGGAACATCATCGATAAGCTTAATTCGGAACAAAAATCACATGACAAACTGATACATCCCTAACAACAACAACGAGCGTAGGTTCATAATNAANAGACTGCTTNAGTGGGAGAACCGGCACTTTATCCAATTCTAATTTTCTTTAACTTTTATACGCTGTCACAAATTTTGCCGAGCAATGCCCTTCACCGAACATGCANAGACTTTCTCTCCTCAACNATGAGCGCAANNCATAATTTGCNANAGATATACTACACANTTTACTTCTGATAAGGGACAACTGCGCTGCGGTATACAGCCTTCCTCTGNCCCCCCCCTCTAACACCCCGCGGCGGCCCTGGACTAACAATCACAATAGGTCGNAAACAAACAGGCCCCAACCAACCGGCAATCAGGGNAAAAACAGGCTAGCCCACCCAACACACCNGCAACCCACACCACACGANACCCCCCTCGCCAACCAGAACAAACAGANTCCCGCTNCANCGNCCCANTACACCACANNGCACCCCCAANAACGGGANCCCTTCACAANNCACCACNGCCACACCTNCCCGCACTCTGGCCCACGCGGACACCCAGGCACCCCCGCGCGCACCTGGCCCA]

[+] EMBL AL694781             [CAGAATCCCCCCGAGGTTNGTGGCGTGAGCATGTAGTTCATTACATACGTTAGCCTTGATCGATTGAGTGACATTATGCGCATATGTAACCACTTTATGAATTGTTCCTTGCATTAGCATTATAAAACTTCTGTTTTAATCAAGCAATCGATTGCTTTTAGTCAATTTATGTAATACTGGACTTCAAAAACGGAAGAAGAGTTGCCAGCATCCCGGCAACACGTTGTAGGCAGCTAGCTGGGCAGCAAGAAAACAAAAAATACCAGTTCCTTCAATGTTCGTAGGAACATCATCGATAAGCTTAATTCGGAACAAAAATCACATGACAAACTGATACATCCCTAACAACAACAACGAGCGTAGGTTCATAATNAANAGACTGCTTNAGTGGGAGAACCGGCACTTTATCCAATTCTAATTTTCTTTAACTTTTATACGCTGTCACAAATTTTGCCGAGCAATGCCCTTCACCGAACATGCANAGACTTTCTCTCCTCAACNATGAGCGCAANNCATAATTTGCNANAGATATACTACACANTTTACTTCTGATAAGGGACAACTGCGCTGCGGTATACAGCCTTCCTCTGNCCCCCCCCTCTAACACCCCGCGGCGGCCCTGGACTAACAATCACAATAGGTCGNAAACAAACAGGCCCCAACCAACCGGCAATCAGGGNAAAAACAGGCTAGCCCACCCAACACACCNGCAACCCACACCACACGANACCCCCCTCGCCAACCAGAACAAACAGANTCCCGCTNCANCGNCCCANTACACCACANNGCACCCCCAANAACGGGANCCCTTCACAANNCACCACNGCCACACCTNCCCGCACTCTGGCCCACGCGGACACCCAGGCACCCCCGCGCGCACCTGGCCCA]


>consensus_1931#0 CAGAATCCCCCCGAGGTTNGTGGCGTGAGCATGTAGTTCATTACATACGTTAGCCTTGAT CGATTGAGTGACATTATGCGCATATGTAACCACTTTATGAATTGTTCCTTGCATTAGCAT TATAAAACTTCTGTTTTAATCAAGCAATCGATTGCTTTTAGTCAATTTATGTAATACTGG ACTTCAAAAACGGAAGAAGAGTTGCCAGCATCCCGGCAACACGTTGTAGGCAGCTAGCTG GGCAGCAAGAAAACAAAAAATACCAGTTCCTTCAATGTTCGTAGGAACATCATCGATAAG CTTAATTCGGAACAAAAATCACATGACAAACTGATACATCCCTAACAACAACAACGAGCG TAGGTTCATAATNAANAGACTGCTTNAGTGGGAGAACCGGCACTTTATCCAATTCTAATT TTCTTTAACTTTTATACGCTGTCACAAATTTTGCCGAGCAATGCCCTTCACCGAACATGC ANAGACTTTCTCTCCTCAACNATGAGCGCAANNCATAATTTGCNANAGATATACTACACA NTTTACTTCTGATAAGGGACAACTGCGCTGCGGTATACAGCCTTCCTCTGNCCCCCCCCT CTAACACCCCGCGGCGGCCCTGGACTAACAATCACAATAGGTCGNAAACAAACAGGCCCC AACCAACCGGCAATCAGGGNAAAAACAGGCTAGCCCACCCAACACACCNGCAACCCACAC CACACGANACCCCCCTCGCCAACCAGAACAAACAGANTCCCGCTNCANCGNCCCANTACA CCACANNGCACCCCCAANAACGGGANCCCTTCACAANNCACCACNGCCACACCTNCCCGC ACTCTGGCCCACGCGGACACCCAGGCACCCCCGCGCGCACCTGGCCCA



consensusID : consensus_1931#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 366
fasta sequence
                              [TCGCCGAGNGNTGTGCGCGTGAGTGTGTGTGTGTGTGCGTGTGGAATGGTGATCGTCGTGAGCACAATGTTCAGCGAACTTAATAATTTATTACGTCTCTTTGGGTGCCTTCTACCATTCATTCCAAATTTATTCGTAAGAAAACGTTGCTAATTTTACGTTGTGGCGTGAGCATGTAGTTCATTACATACGTTAGCCTTGATCGATTGAGTGACATTATGCGCATATGTAACCACTTTATGAATTGTTCCTTGCATTAGCATTATAAAACTTCTGTTTTAATCAAGCAATCGATTGCTTTTAGTCAAATTTATGTAATACTGGACTTCAAAAACGGAAGAAGAGTTGCCAGCATCCCGGCAACAC]

[+] EMBL AL932631             [TCGCCGAGNGNTGTGCGCGTGAGTGTGTGTGTGTGTGCGTGTGGAATGGTGATCGTCGTGAGCACAATGTTCAGCGAACTTAATAATTTATTACGTCTCTTTGGGTGCCTTCTACCATTCATTCCAAATTTATTCGTAAGAAAACGTTGCTAATTTTACGTTGTGGCGTGAGCATGTAGTTCATTACATACGTTAGCCTTGATCGATTGAGTGACATTATGCGCATATGTAACCACTTTATGAATTGTTCCTTGCATTAGCATTATAAAACTTCTGTTTTAATCAAGCAATCGATTGCTTTTAGTCAAATTTATGTAATACTGGACTTCAAAAACGGAAGAAGAGTTGCCAGCATCCCGGCAACAC]


>consensus_1931#1 TCGCCGAGNGNTGTGCGCGTGAGTGTGTGTGTGTGTGCGTGTGGAATGGTGATCGTCGTG AGCACAATGTTCAGCGAACTTAATAATTTATTACGTCTCTTTGGGTGCCTTCTACCATTC ATTCCAAATTTATTCGTAAGAAAACGTTGCTAATTTTACGTTGTGGCGTGAGCATGTAGT TCATTACATACGTTAGCCTTGATCGATTGAGTGACATTATGCGCATATGTAACCACTTTA TGAATTGTTCCTTGCATTAGCATTATAAAACTTCTGTTTTAATCAAGCAATCGATTGCTT TTAGTCAAATTTATGTAATACTGGACTTCAAAAACGGAAGAAGAGTTGCCAGCATCCCGG CAACAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1931#0      ------------------------------------------------------------
consensus_1931#1      TCGCCGAGNGNTGTGCGCGTGAGTGTGTGTGTGTGTGCGTGTGGAATGGTGATCGTCGTG 60
                                                                                  

consensus_1931#0      ------------------------------------------------------------
consensus_1931#1      AGCACAATGTTCAGCGAACTTAATAATTTATTACGTCTCTTTGGGTGCCTTCTACCATTC 120
                                                                                  

consensus_1931#0      -------------------CAGAATCCCCCCGAGGTTN----GTGGCGTGAGCATGTAGT 37
consensus_1931#1      ATTCCAAATTTATTCGTAAGAAAACGTTGCTAATTTTACGTTGTGGCGTGAGCATGTAGT 180
                                          * **     *  *  **     ******************

consensus_1931#0      TCATTACATACGTTAGCCTTGATCGATTGAGTGACATTATGCGCATATGTAACCACTTTA 97
consensus_1931#1      TCATTACATACGTTAGCCTTGATCGATTGAGTGACATTATGCGCATATGTAACCACTTTA 240
                      ************************************************************

consensus_1931#0      TGAATTGTTCCTTGCATTAGCATTATAAAACTTCTGTTTTAATCAAGCAATCGATTGCTT 157
consensus_1931#1      TGAATTGTTCCTTGCATTAGCATTATAAAACTTCTGTTTTAATCAAGCAATCGATTGCTT 300
                      ************************************************************

consensus_1931#0      TTAGTCAA-TTTATGTAATACTGGACTTCAAAAACGGAAGAAGAGTTGCCAGCATCCCGG 216
consensus_1931#1      TTAGTCAAATTTATGTAATACTGGACTTCAAAAACGGAAGAAGAGTTGCCAGCATCCCGG 360
                      ******** ***************************************************

consensus_1931#0      CAACACGTTGTAGGCAGCTAGCTGGGCAGCAAGAAAACAAAAAATACCAGTTCCTTCAAT 276
consensus_1931#1      CAACAC------------------------------------------------------ 366
                      ******                                                      

consensus_1931#0      GTTCGTAGGAACATCATCGATAAGCTTAATTCGGAACAAAAATCACATGACAAACTGATA 336
consensus_1931#1      ------------------------------------------------------------
                                                                                  

consensus_1931#0      CATCCCTAACAACAACAACGAGCGTAGGTTCATAATNAANAGACTGCTTNAGTGGGAGAA 396
consensus_1931#1      ------------------------------------------------------------
                                                                                  

consensus_1931#0      CCGGCACTTTATCCAATTCTAATTTTCTTTAACTTTTATACGCTGTCACAAATTTTGCCG 456
consensus_1931#1      ------------------------------------------------------------
                                                                                  

consensus_1931#0      AGCAATGCCCTTCACCGAACATGCANAGACTTTCTCTCCTCAACNATGAGCGCAANNCAT 516
consensus_1931#1      ------------------------------------------------------------
                                                                                  

consensus_1931#0      AATTTGCNANAGATATACTACACANTTTACTTCTGATAAGGGACAACTGCGCTGCGGTAT 576
consensus_1931#1      ------------------------------------------------------------
                                                                                  

consensus_1931#0      ACAGCCTTCCTCTGNCCCCCCCCTCTAACACCCCGCGGCGGCCCTGGACTAACAATCACA 636
consensus_1931#1      ------------------------------------------------------------
                                                                                  

consensus_1931#0      ATAGGTCGNAAACAAACAGGCCCCAACCAACCGGCAATCAGGGNAAAAACAGGCTAGCCC 696
consensus_1931#1      ------------------------------------------------------------
                                                                                  

consensus_1931#0      ACCCAACACACCNGCAACCCACACCACACGANACCCCCCTCGCCAACCAGAACAAACAGA 756
consensus_1931#1      ------------------------------------------------------------
                                                                                  

consensus_1931#0      NTCCCGCTNCANCGNCCCANTACACCACANNGCACCCCCAANAACGGGANCCCTTCACAA 816
consensus_1931#1      ------------------------------------------------------------
                                                                                  

consensus_1931#0      NNCACCACNGCCACACCTNCCCGCACTCTGGCCCACGCGGACACCCAGGCACCCCCGCGC 876
consensus_1931#1      ------------------------------------------------------------
                                                                                  

consensus_1931#0      GCACCTGGCCCA 888
consensus_1931#1      ------------
                                  




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)