These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1931#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 888 fasta sequence [CAGAATCCCCCCGAGGTTNGTGGCGTGAGCATGTAGTTCATTACATACGTTAGCCTTGATCGATTGAGTGACATTATGCGCATATGTAACCACTTTATGAATTGTTCCTTGCATTAGCATTATAAAACTTCTGTTTTAATCAAGCAATCGATTGCTTTTAGTCAATTTATGTAATACTGGACTTCAAAAACGGAAGAAGAGTTGCCAGCATCCCGGCAACACGTTGTAGGCAGCTAGCTGGGCAGCAAGAAAACAAAAAATACCAGTTCCTTCAATGTTCGTAGGAACATCATCGATAAGCTTAATTCGGAACAAAAATCACATGACAAACTGATACATCCCTAACAACAACAACGAGCGTAGGTTCATAATNAANAGACTGCTTNAGTGGGAGAACCGGCACTTTATCCAATTCTAATTTTCTTTAACTTTTATACGCTGTCACAAATTTTGCCGAGCAATGCCCTTCACCGAACATGCANAGACTTTCTCTCCTCAACNATGAGCGCAANNCATAATTTGCNANAGATATACTACACANTTTACTTCTGATAAGGGACAACTGCGCTGCGGTATACAGCCTTCCTCTGNCCCCCCCCTCTAACACCCCGCGGCGGCCCTGGACTAACAATCACAATAGGTCGNAAACAAACAGGCCCCAACCAACCGGCAATCAGGGNAAAAACAGGCTAGCCCACCCAACACACCNGCAACCCACACCACACGANACCCCCCTCGCCAACCAGAACAAACAGANTCCCGCTNCANCGNCCCANTACACCACANNGCACCCCCAANAACGGGANCCCTTCACAANNCACCACNGCCACACCTNCCCGCACTCTGGCCCACGCGGACACCCAGGCACCCCCGCGCGCACCTGGCCCA] [+] EMBL AL694781 [CAGAATCCCCCCGAGGTTNGTGGCGTGAGCATGTAGTTCATTACATACGTTAGCCTTGATCGATTGAGTGACATTATGCGCATATGTAACCACTTTATGAATTGTTCCTTGCATTAGCATTATAAAACTTCTGTTTTAATCAAGCAATCGATTGCTTTTAGTCAATTTATGTAATACTGGACTTCAAAAACGGAAGAAGAGTTGCCAGCATCCCGGCAACACGTTGTAGGCAGCTAGCTGGGCAGCAAGAAAACAAAAAATACCAGTTCCTTCAATGTTCGTAGGAACATCATCGATAAGCTTAATTCGGAACAAAAATCACATGACAAACTGATACATCCCTAACAACAACAACGAGCGTAGGTTCATAATNAANAGACTGCTTNAGTGGGAGAACCGGCACTTTATCCAATTCTAATTTTCTTTAACTTTTATACGCTGTCACAAATTTTGCCGAGCAATGCCCTTCACCGAACATGCANAGACTTTCTCTCCTCAACNATGAGCGCAANNCATAATTTGCNANAGATATACTACACANTTTACTTCTGATAAGGGACAACTGCGCTGCGGTATACAGCCTTCCTCTGNCCCCCCCCTCTAACACCCCGCGGCGGCCCTGGACTAACAATCACAATAGGTCGNAAACAAACAGGCCCCAACCAACCGGCAATCAGGGNAAAAACAGGCTAGCCCACCCAACACACCNGCAACCCACACCACACGANACCCCCCTCGCCAACCAGAACAAACAGANTCCCGCTNCANCGNCCCANTACACCACANNGCACCCCCAANAACGGGANCCCTTCACAANNCACCACNGCCACACCTNCCCGCACTCTGGCCCACGCGGACACCCAGGCACCCCCGCGCGCACCTGGCCCA] consensusID : consensus_1931#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence [TCGCCGAGNGNTGTGCGCGTGAGTGTGTGTGTGTGTGCGTGTGGAATGGTGATCGTCGTGAGCACAATGTTCAGCGAACTTAATAATTTATTACGTCTCTTTGGGTGCCTTCTACCATTCATTCCAAATTTATTCGTAAGAAAACGTTGCTAATTTTACGTTGTGGCGTGAGCATGTAGTTCATTACATACGTTAGCCTTGATCGATTGAGTGACATTATGCGCATATGTAACCACTTTATGAATTGTTCCTTGCATTAGCATTATAAAACTTCTGTTTTAATCAAGCAATCGATTGCTTTTAGTCAAATTTATGTAATACTGGACTTCAAAAACGGAAGAAGAGTTGCCAGCATCCCGGCAACAC] [+] EMBL AL932631 [TCGCCGAGNGNTGTGCGCGTGAGTGTGTGTGTGTGTGCGTGTGGAATGGTGATCGTCGTGAGCACAATGTTCAGCGAACTTAATAATTTATTACGTCTCTTTGGGTGCCTTCTACCATTCATTCCAAATTTATTCGTAAGAAAACGTTGCTAATTTTACGTTGTGGCGTGAGCATGTAGTTCATTACATACGTTAGCCTTGATCGATTGAGTGACATTATGCGCATATGTAACCACTTTATGAATTGTTCCTTGCATTAGCATTATAAAACTTCTGTTTTAATCAAGCAATCGATTGCTTTTAGTCAAATTTATGTAATACTGGACTTCAAAAACGGAAGAAGAGTTGCCAGCATCCCGGCAACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1931#0 ------------------------------------------------------------ consensus_1931#1 TCGCCGAGNGNTGTGCGCGTGAGTGTGTGTGTGTGTGCGTGTGGAATGGTGATCGTCGTG 60 consensus_1931#0 ------------------------------------------------------------ consensus_1931#1 AGCACAATGTTCAGCGAACTTAATAATTTATTACGTCTCTTTGGGTGCCTTCTACCATTC 120 consensus_1931#0 -------------------CAGAATCCCCCCGAGGTTN----GTGGCGTGAGCATGTAGT 37 consensus_1931#1 ATTCCAAATTTATTCGTAAGAAAACGTTGCTAATTTTACGTTGTGGCGTGAGCATGTAGT 180 * ** * * ** ****************** consensus_1931#0 TCATTACATACGTTAGCCTTGATCGATTGAGTGACATTATGCGCATATGTAACCACTTTA 97 consensus_1931#1 TCATTACATACGTTAGCCTTGATCGATTGAGTGACATTATGCGCATATGTAACCACTTTA 240 ************************************************************ consensus_1931#0 TGAATTGTTCCTTGCATTAGCATTATAAAACTTCTGTTTTAATCAAGCAATCGATTGCTT 157 consensus_1931#1 TGAATTGTTCCTTGCATTAGCATTATAAAACTTCTGTTTTAATCAAGCAATCGATTGCTT 300 ************************************************************ consensus_1931#0 TTAGTCAA-TTTATGTAATACTGGACTTCAAAAACGGAAGAAGAGTTGCCAGCATCCCGG 216 consensus_1931#1 TTAGTCAAATTTATGTAATACTGGACTTCAAAAACGGAAGAAGAGTTGCCAGCATCCCGG 360 ******** *************************************************** consensus_1931#0 CAACACGTTGTAGGCAGCTAGCTGGGCAGCAAGAAAACAAAAAATACCAGTTCCTTCAAT 276 consensus_1931#1 CAACAC------------------------------------------------------ 366 ****** consensus_1931#0 GTTCGTAGGAACATCATCGATAAGCTTAATTCGGAACAAAAATCACATGACAAACTGATA 336 consensus_1931#1 ------------------------------------------------------------ consensus_1931#0 CATCCCTAACAACAACAACGAGCGTAGGTTCATAATNAANAGACTGCTTNAGTGGGAGAA 396 consensus_1931#1 ------------------------------------------------------------ consensus_1931#0 CCGGCACTTTATCCAATTCTAATTTTCTTTAACTTTTATACGCTGTCACAAATTTTGCCG 456 consensus_1931#1 ------------------------------------------------------------ consensus_1931#0 AGCAATGCCCTTCACCGAACATGCANAGACTTTCTCTCCTCAACNATGAGCGCAANNCAT 516 consensus_1931#1 ------------------------------------------------------------ consensus_1931#0 AATTTGCNANAGATATACTACACANTTTACTTCTGATAAGGGACAACTGCGCTGCGGTAT 576 consensus_1931#1 ------------------------------------------------------------ consensus_1931#0 ACAGCCTTCCTCTGNCCCCCCCCTCTAACACCCCGCGGCGGCCCTGGACTAACAATCACA 636 consensus_1931#1 ------------------------------------------------------------ consensus_1931#0 ATAGGTCGNAAACAAACAGGCCCCAACCAACCGGCAATCAGGGNAAAAACAGGCTAGCCC 696 consensus_1931#1 ------------------------------------------------------------ consensus_1931#0 ACCCAACACACCNGCAACCCACACCACACGANACCCCCCTCGCCAACCAGAACAAACAGA 756 consensus_1931#1 ------------------------------------------------------------ consensus_1931#0 NTCCCGCTNCANCGNCCCANTACACCACANNGCACCCCCAANAACGGGANCCCTTCACAA 816 consensus_1931#1 ------------------------------------------------------------ consensus_1931#0 NNCACCACNGCCACACCTNCCCGCACTCTGGCCCACGCGGACACCCAGGCACCCCCGCGC 876 consensus_1931#1 ------------------------------------------------------------ consensus_1931#0 GCACCTGGCCCA 888 consensus_1931#1 ------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||