These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1934#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1052 fasta sequence [GAGGTTTACACTCATCCAATTTGGTGCCTCCGGTTAGACATTGTAGCGGGATATAATTGTATGTTTTTATGCTTTTTGAAAGTTTACTTTCCTCATGTGTTGTGTGCACTTTAGGCAGGGGAGACACTAACATAAGCGTTGCCTGTTTGCCCGTTGGGGAAAAACACAACAATTGCAATAGTTCTACAAGATTCTACAGCGAAAACAAACACAACGACCCATTGGAATATAGTGAACCATTGTTGTTGATAAACCCACCCGTGTGCGAAACATCAAACTAAGAAAACTCTCTCCGCGTCTTCTACTTTTACACACTGGATATTTGGTTCTCGGTATCTNGGCTTTCACGCAAGCGGCACTGAGCGCTTTTCACTTCTAAATGTNTCNCTCGAACACTNNNGCAATACTGACTCTTAGCCAGGNNAAACTATCGGCGACTTCCGCTCCAGCACACTTCTCCCCATCTNTTCTTCACTTCTCCTTCCTACCTACANGGCTCTGCTTGCTTGGGCGCCAGCCTCTNTCACACACGCACNTNCACCACTCTCCACACGCTCTGCTCACTGCTNNNGGCGGACTGCGTTGCCTCCCCCCGCTCTCCCCCCTTTTCTGCTGCGTCCCANCACACTGCTTGCACANCNCCTACTGCCCTCTACTCCATTCNACCCTCACTACTACTCTCCCGCGCACACGCGNCANAACCTCNCNAACGCACGGNTACNACAGGNCCCCTANACCCCTGGCCCCACATCNGGGGCATCTNCAAGGCNAACCAACCCCAACCCGCCCCGAGGGCTNGGTCAACCNAGACTACAGACAANTCAAGCANNANGGAGGCACCCAAACNCGGACCCGNANCCACCCGCCCCTCTACCGNCACACTGGCGACCACACCNTGGGCTGGCCAACCCCAATCACCACACACCCAGGCACACGGCGATCCCGGCTCCAGNCAGTNAGGACCTCNGGACCCCCCTATCNCGCCACCTACGNGGCACTCCCTCGGCCGTAACCACCCACANAAATAATAGCAAACACGGCACACATCACGN] [+] EMBL AL694795 [GAGGTTTACACTCATCCAATTTGGTGCCTCCGGTTAGACATTGTAGCGGGATATAATTGTATGTTTTTATGCTTTTTGAAAGTTTACTTTCCTCATGTGTTGTGTGCACTTTAGGCAGGGGAGACACTAACATAAGCGTTGCCTGTTTGCCCGTTGGGGAAAAACACAACAATTGCAATAGTTCTACAAGATTCTACAGCGAAAACAAACACAACGACCCATTGGAATATAGTGAACCATTGTTGTTGATAAACCCACCCGTGTGCGAAACATCAAACTAAGAAAACTCTCTCCGCGTCTTCTACTTTTACACACTGGATATTTGGTTCTCGGTATCTNGGCTTTCACGCAAGCGGCACTGAGCGCTTTTCACTTCTAAATGTNTCNCTCGAACACTNNNGCAATACTGACTCTTAGCCAGGNNAAACTATCGGCGACTTCCGCTCCAGCACACTTCTCCCCATCTNTTCTTCACTTCTCCTTCCTACCTACANGGCTCTGCTTGCTTGGGCGCCAGCCTCTNTCACACACGCACNTNCACCACTCTCCACACGCTCTGCTCACTGCTNNNGGCGGACTGCGTTGCCTCCCCCCGCTCTCCCCCCTTTTCTGCTGCGTCCCANCACACTGCTTGCACANCNCCTACTGCCCTCTACTCCATTCNACCCTCACTACTACTCTCCCGCGCACACGCGNCANAACCTCNCNAACGCACGGNTACNACAGGNCCCCTANACCCCTGGCCCCACATCNGGGGCATCTNCAAGGCNAACCAACCCCAACCCGCCCCGAGGGCTNGGTCAACCNAGACTACAGACAANTCAAGCANNANGGAGGCACCCAAACNCGGACCCGNANCCACCCGCCCCTCTACCGNCACACTGGCGACCACACCNTGGGCTGGCCAACCCCAATCACCACACACCCAGGCACACGGCGATCCCGGCTCCAGNCAGTNAGGACCTCNGGACCCCCCTATCNCGCCACCTACGNGGCACTCCCTCGGCCGTAACCACCCACANAAATAATAGCAAACACGGCACACATCACGN] consensusID : consensus_1934#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 596 fasta sequence [TCTTGTTTCACACATTCTTAGCTTTTGTTTTTATTACTCTAAAATTATAATGAGAAATTAATTTTAAACGCTTGTGTTGAATTGTTTTTATCTTCTTCTTCTTGTTTGCTTATGTTTTTTTTTGTTTGTTTTGTTTCCCAAGGTATGAAGTAACCAAATATATGTTTTTTTCTTTTCTTTACACGCTACACTCATCCAATTTGGTGCCTCCGGTTTAAGACATTGTAGCGGGATATAATTGTATGTTTTTATGCTTTTTGAAAGTTTACTTTCCTCATGTGTTGTGTGCACTTTAGGCAGGGGAGACACTAACATAAGCGTTGCCTGTTTGCCCGTTGGGGAAAAACACAACAATTGCAATAGTTCTACAAGATTCTACAGCGAAAACAAACACAACGACCCATTGGAATATAGTGAACCATTGTTGTTGATAAACCCACCCGTGTGCGAAACATCAAACTAAGAAAACTCTCTCCGCGTCTTCTACTTTTAAATGGATATTTGTTTCGGTTTTGGTTTCAGAAGGGATGAGGTTTCATTTAATGTTTTTTGAAATTTTGCATACTGATCTTAGCAGTAATATTGGGATTTGTTAG] [-] EMBL BX627423 [TCTTGTTTCACACATTCTTAGCTTTTGTTTTTATTACTCTAAAATTATAATGAGAAATTAATTTTAAACGCTTGTGTTGAATTGTTTTTATCTTCTTCTTCTTGTTTGCTTATGTTTTTTTTTGTTTGTTTTGTTTCCCAAGGTATGAAGTAACCAAATATATGTTTTTTTCTTTTCTTTACACGCTACACTCATCCAATTTGGTGCCTCCGGTTTAAGACATTGTAGCGGGATATAATTGTATGTTTTTATGCTTTTTGAAAGTTTACTTTCCTCATGTGTTGTGTGCACTTTAGGCAGGGGAGACACTAACATAAGCGTTGCCTGTTTGCCCGTTGGGGAAAAACACAACAATTGCAATAGTTCTACAAGATTCTACAGCGAAAACAAACACAACGACCCATTGGAATATAGTGAACCATTGTTGTTGATAAACCCACCCGTGTGCGAAACATCAAACTAAGAAAACTCTCTCCGCGTCTTCTACTTTTAAATGGATATTTGTTTCGGTTTTGGTTTCAGAAGGGATGAGGTTTCATTTAATGTTTTTTGAAATTTTGCATACTGATCTTAGCAGTAATATTGGGATTTGTTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1934#0 ------------------------------------------------------------ consensus_1934#1 TCTTGTTTCACACATTCTTAGCTTTTGTTTTTATTACTCTAAAATTATAATGAGAAATTA 60 consensus_1934#0 ------------------------------------------------------------ consensus_1934#1 ATTTTAAACGCTTGTGTTGAATTGTTTTTATCTTCTTCTTCTTGTTTGCTTATGTTTTTT 120 consensus_1934#0 ------------------------------------------------------------ consensus_1934#1 TTTGTTTGTTTTGTTTCCCAAGGTATGAAGTAACCAAATATATGTTTTTTTCTTTTCTTT 180 consensus_1934#0 GAGGTTTACACTCATCCAATTTGGTGCCTCCGGTT--AGACATTGTAGCGGGATATAATT 58 consensus_1934#1 ACACGCTACACTCATCCAATTTGGTGCCTCCGGTTTAAGACATTGTAGCGGGATATAATT 240 ***************************** *********************** consensus_1934#0 GTATGTTTTTATGCTTTTTGAAAGTTTACTTTCCTCATGTGTTGTGTGCACTTTAGGCAG 118 consensus_1934#1 GTATGTTTTTATGCTTTTTGAAAGTTTACTTTCCTCATGTGTTGTGTGCACTTTAGGCAG 300 ************************************************************ consensus_1934#0 GGGAGACACTAACATAAGCGTTGCCTGTTTGCCCGTTGGGGAAAAACACAACAATTGCAA 178 consensus_1934#1 GGGAGACACTAACATAAGCGTTGCCTGTTTGCCCGTTGGGGAAAAACACAACAATTGCAA 360 ************************************************************ consensus_1934#0 TAGTTCTACAAGATTCTACAGCGAAAACAAACACAACGACCCATTGGAATATAGTGAACC 238 consensus_1934#1 TAGTTCTACAAGATTCTACAGCGAAAACAAACACAACGACCCATTGGAATATAGTGAACC 420 ************************************************************ consensus_1934#0 ATTGTTGTTGATAAACCCACCCGTGTGCGAAACATCAAACTAAGAAAACTCTCTCCGCGT 298 consensus_1934#1 ATTGTTGTTGATAAACCCACCCGTGTGCGAAACATCAAACTAAGAAAACTCTCTCCGCGT 480 ************************************************************ consensus_1934#0 CTTCTACTTTTACACACTGGATATTTGGTTCTCGGTATCTNGGCTTTCACGCAAGCGGCA 358 consensus_1934#1 CTTCTACTTTTAAA---TGGATATTTG--TTTCGGT--TTTGGTTTCAGAAGGGATGAGG 533 ************ * ********** * ***** * ** ** * consensus_1934#0 CTGAGCGCTTTTCACTTCTAAATGTNTCNCTCGAACACTNNN-GCAATACTGACTCTTAG 417 consensus_1934#1 TTTCATTTAATGTTTTTTGAAATTTTGCATACTGATCTTAGCAGTAATATTGGGATTT-G 592 * * ** **** * * * * * * **** ** ** * consensus_1934#0 CCAGGNNAAACTATCGGCGACTTCCGCTCCAGCACACTTCTCCCCATCTNTTCTTCACTT 477 consensus_1934#1 TTAG-------------------------------------------------------- 596 ** consensus_1934#0 CTCCTTCCTACCTACANGGCTCTGCTTGCTTGGGCGCCAGCCTCTNTCACACACGCACNT 537 consensus_1934#1 ------------------------------------------------------------ consensus_1934#0 NCACCACTCTCCACACGCTCTGCTCACTGCTNNNGGCGGACTGCGTTGCCTCCCCCCGCT 597 consensus_1934#1 ------------------------------------------------------------ consensus_1934#0 CTCCCCCCTTTTCTGCTGCGTCCCANCACACTGCTTGCACANCNCCTACTGCCCTCTACT 657 consensus_1934#1 ------------------------------------------------------------ consensus_1934#0 CCATTCNACCCTCACTACTACTCTCCCGCGCACACGCGNCANAACCTCNCNAACGCACGG 717 consensus_1934#1 ------------------------------------------------------------ consensus_1934#0 NTACNACAGGNCCCCTANACCCCTGGCCCCACATCNGGGGCATCTNCAAGGCNAACCAAC 777 consensus_1934#1 ------------------------------------------------------------ consensus_1934#0 CCCAACCCGCCCCGAGGGCTNGGTCAACCNAGACTACAGACAANTCAAGCANNANGGAGG 837 consensus_1934#1 ------------------------------------------------------------ consensus_1934#0 CACCCAAACNCGGACCCGNANCCACCCGCCCCTCTACCGNCACACTGGCGACCACACCNT 897 consensus_1934#1 ------------------------------------------------------------ consensus_1934#0 GGGCTGGCCAACCCCAATCACCACACACCCAGGCACACGGCGATCCCGGCTCCAGNCAGT 957 consensus_1934#1 ------------------------------------------------------------ consensus_1934#0 NAGGACCTCNGGACCCCCCTATCNCGCCACCTACGNGGCACTCCCTCGGCCGTAACCACC 1017 consensus_1934#1 ------------------------------------------------------------ consensus_1934#0 CACANAAATAATAGCAAACACGGCACACATCACGN 1052 consensus_1934#1 ----------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||