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Anopheles gambiae
cluster # 1936 cluster # 1936       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1936#0 length = 880 sequences # 1  
consensus_1936#1 length = 671 sequences # 1  

consensusID : consensus_1936#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 880
fasta sequence
                              [GCCAGAATGCCATGAGGCGCGAAGTGCATTGGTCGGCAAGACGGTAAACAAACAAAGCGTGACACTTATCCGGTCACTCGGGGGTGAAAATACCGACAGTGTGGTGTAACGTGCAGCTTCGCTTCAGAACCGGCACCAAACATGAGATGCTCTAGGTGGCCCCTGTTACCCCTGCTGCTGGTGCTGACCGTTCAGCAGTGTGCCGGCCAGCGGGAAGTGTTTCGGCTGTTCGCGAACTGTCGCTACGGCAAGCCCAACTTTGATCCGTGCATCAAGAAAGCGTTCAACGCGCTGCGACCATGGTTTAAGACAGGTTTGCCCGAGTTTAACGTGGCCCCGTTCGATCCGCACCGGGCCGAATTCATCGAGCAGCGGCGGGGCGATCTCGGCGGGCTCGGCGGCTACCGGTTGCTGCTGTCCAACGTGTCCGAGTACGGCTGGATGCAGTCGGAGGTGACCAAGTACCGGACCGAGCCGAAGCACGACCGCATCGTGTACTCGCAGTTCTTCCCGGAGAAATCGCTCGACGGCGGCTACGACTTCCAGTCGAAGATTCTCGGCCTGCCGCGCCATACGCGGGGTGTGTGGAATCTGACGCTGTACAACTACAGCCAGACGACGACGGTTAACGCGCATCGGGTGGGACCAAGGGGGGCTGCTTGAAAGGTGCCGGGTTCCGAGGAATCGACAANGAATCGGGCGATATTGAAGCTTGCACGATTCTCCGAACCTTGGTTTCATCGGGGCCGAAAAATTTTATCGNGAAATCAATTGNCCNGACATTTCTTTCATTCAAACACGAATTTTTGGGCCAACCCGAATTTTCCCCGTTTCAATNNCAAACCCCNTTTATTCACAGAATTCTCCGTAAGGTTTCCAC]

[+] EMBL BX467882             [GCCAGAATGCCATGAGGCGCGAAGTGCATTGGTCGGCAAGACGGTAAACAAACAAAGCGTGACACTTATCCGGTCACTCGGGGGTGAAAATACCGACAGTGTGGTGTAACGTGCAGCTTCGCTTCAGAACCGGCACCAAACATGAGATGCTCTAGGTGGCCCCTGTTACCCCTGCTGCTGGTGCTGACCGTTCAGCAGTGTGCCGGCCAGCGGGAAGTGTTTCGGCTGTTCGCGAACTGTCGCTACGGCAAGCCCAACTTTGATCCGTGCATCAAGAAAGCGTTCAACGCGCTGCGACCATGGTTTAAGACAGGTTTGCCCGAGTTTAACGTGGCCCCGTTCGATCCGCACCGGGCCGAATTCATCGAGCAGCGGCGGGGCGATCTCGGCGGGCTCGGCGGCTACCGGTTGCTGCTGTCCAACGTGTCCGAGTACGGCTGGATGCAGTCGGAGGTGACCAAGTACCGGACCGAGCCGAAGCACGACCGCATCGTGTACTCGCAGTTCTTCCCGGAGAAATCGCTCGACGGCGGCTACGACTTCCAGTCGAAGATTCTCGGCCTGCCGCGCCATACGCGGGGTGTGTGGAATCTGACGCTGTACAACTACAGCCAGACGACGACGGTTAACGCGCATCGGGTGGGACCAAGGGGGGCTGCTTGAAAGGTGCCGGGTTCCGAGGAATCGACAANGAATCGGGCGATATTGAAGCTTGCACGATTCTCCGAACCTTGGTTTCATCGGGGCCGAAAAATTTTATCGNGAAATCAATTGNCCNGACATTTCTTTCATTCAAACACGAATTTTTGGGCCAACCCGAATTTTCCCCGTTTCAATNNCAAACCCCNTTTATTCACAGAATTCTCCGTAAGGTTTCCAC]


>consensus_1936#0 GCCAGAATGCCATGAGGCGCGAAGTGCATTGGTCGGCAAGACGGTAAACAAACAAAGCGT GACACTTATCCGGTCACTCGGGGGTGAAAATACCGACAGTGTGGTGTAACGTGCAGCTTC GCTTCAGAACCGGCACCAAACATGAGATGCTCTAGGTGGCCCCTGTTACCCCTGCTGCTG GTGCTGACCGTTCAGCAGTGTGCCGGCCAGCGGGAAGTGTTTCGGCTGTTCGCGAACTGT CGCTACGGCAAGCCCAACTTTGATCCGTGCATCAAGAAAGCGTTCAACGCGCTGCGACCA TGGTTTAAGACAGGTTTGCCCGAGTTTAACGTGGCCCCGTTCGATCCGCACCGGGCCGAA TTCATCGAGCAGCGGCGGGGCGATCTCGGCGGGCTCGGCGGCTACCGGTTGCTGCTGTCC AACGTGTCCGAGTACGGCTGGATGCAGTCGGAGGTGACCAAGTACCGGACCGAGCCGAAG CACGACCGCATCGTGTACTCGCAGTTCTTCCCGGAGAAATCGCTCGACGGCGGCTACGAC TTCCAGTCGAAGATTCTCGGCCTGCCGCGCCATACGCGGGGTGTGTGGAATCTGACGCTG TACAACTACAGCCAGACGACGACGGTTAACGCGCATCGGGTGGGACCAAGGGGGGCTGCT TGAAAGGTGCCGGGTTCCGAGGAATCGACAANGAATCGGGCGATATTGAAGCTTGCACGA TTCTCCGAACCTTGGTTTCATCGGGGCCGAAAAATTTTATCGNGAAATCAATTGNCCNGA CATTTCTTTCATTCAAACACGAATTTTTGGGCCAACCCGAATTTTCCCCGTTTCAATNNC AAACCCCNTTTATTCACAGAATTCTCCGTAAGGTTTCCAC



consensusID : consensus_1936#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 671
fasta sequence
                              [AATCCCCCGAGGTTAACCAAGAGCTAGCTAGACATCGTCTCGAACCTCCGNTGAAGTGCATTGGTCGGCAAGACGGTAAACAAACAAAGCGTGACACTTATCCGGTCACTCGGGGGTGAAAATACCGACAGTGTGGTGTAACGTGCAGCTTCGCTTCAGAACCGGCACCAAACATGAGATGCTCTAGGTGGCCCCTGTTACCCCTGCTGCTGGTGCTGACCGTTCAGCAGTGTGCCGGCCAGCGGGAAGTGTTTCGGCTGTTCGCGAACTGTACGCTACGGCAAGCCCAACTTTGATCCGTGCATCAAGAAAGCGTTCAACGCGCTGCGACCATGGTTTAAGACAGGTTTGCCCGAGTTTAACGTGGCCCCGTTCGATCCGCACCGGGCCGAATTCATCGAGCAGCGGCGGGCGATCTCGGCGGGCTCGGCGGCTACCGGTTGCTGCTGTCCAACGTGTCCGAGTACGGCTGGATGCAGTCGGAGGTGACCAAGTACCGGACGAGCCGAAGCACGACCGCATCGTGTACTCGCAGTTCTTCCCGGAGAAATCGCTCGACGGCGGCTACGACTTCCAGTCGAAGATTCTCGGCTGCCGCGCCATACGCGGGTGTGTGGNATCTGACGCTGTACAATACAGCCAGACGACGACGGTGACGCGCATCGGTGGAC]

[+] EMBL AL694801             [AATCCCCCGAGGTTAACCAAGAGCTAGCTAGACATCGTCTCGAACCTCCGNTGAAGTGCATTGGTCGGCAAGACGGTAAACAAACAAAGCGTGACACTTATCCGGTCACTCGGGGGTGAAAATACCGACAGTGTGGTGTAACGTGCAGCTTCGCTTCAGAACCGGCACCAAACATGAGATGCTCTAGGTGGCCCCTGTTACCCCTGCTGCTGGTGCTGACCGTTCAGCAGTGTGCCGGCCAGCGGGAAGTGTTTCGGCTGTTCGCGAACTGTACGCTACGGCAAGCCCAACTTTGATCCGTGCATCAAGAAAGCGTTCAACGCGCTGCGACCATGGTTTAAGACAGGTTTGCCCGAGTTTAACGTGGCCCCGTTCGATCCGCACCGGGCCGAATTCATCGAGCAGCGGCGGGCGATCTCGGCGGGCTCGGCGGCTACCGGTTGCTGCTGTCCAACGTGTCCGAGTACGGCTGGATGCAGTCGGAGGTGACCAAGTACCGGACGAGCCGAAGCACGACCGCATCGTGTACTCGCAGTTCTTCCCGGAGAAATCGCTCGACGGCGGCTACGACTTCCAGTCGAAGATTCTCGGCTGCCGCGCCATACGCGGGTGTGTGGNATCTGACGCTGTACAATACAGCCAGACGACGACGGTGACGCGCATCGGTGGAC]


>consensus_1936#1 AATCCCCCGAGGTTAACCAAGAGCTAGCTAGACATCGTCTCGAACCTCCGNTGAAGTGCA TTGGTCGGCAAGACGGTAAACAAACAAAGCGTGACACTTATCCGGTCACTCGGGGGTGAA AATACCGACAGTGTGGTGTAACGTGCAGCTTCGCTTCAGAACCGGCACCAAACATGAGAT GCTCTAGGTGGCCCCTGTTACCCCTGCTGCTGGTGCTGACCGTTCAGCAGTGTGCCGGCC AGCGGGAAGTGTTTCGGCTGTTCGCGAACTGTACGCTACGGCAAGCCCAACTTTGATCCG TGCATCAAGAAAGCGTTCAACGCGCTGCGACCATGGTTTAAGACAGGTTTGCCCGAGTTT AACGTGGCCCCGTTCGATCCGCACCGGGCCGAATTCATCGAGCAGCGGCGGGCGATCTCG GCGGGCTCGGCGGCTACCGGTTGCTGCTGTCCAACGTGTCCGAGTACGGCTGGATGCAGT CGGAGGTGACCAAGTACCGGACGAGCCGAAGCACGACCGCATCGTGTACTCGCAGTTCTT CCCGGAGAAATCGCTCGACGGCGGCTACGACTTCCAGTCGAAGATTCTCGGCTGCCGCGC CATACGCGGGTGTGTGGNATCTGACGCTGTACAATACAGCCAGACGACGACGGTGACGCG CATCGGTGGAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1936#0      --------------------------GCCAGAA--TGCCATGAGGC----GCGAAGTGCA 28
consensus_1936#1      AATCCCCCGAGGTTAACCAAGAGCTAGCTAGACATCGTCTCGAACCTCCGNTGAAGTGCA 60
                                                ** ***    * *  **  *      ********

consensus_1936#0      TTGGTCGGCAAGACGGTAAACAAACAAAGCGTGACACTTATCCGGTCACTCGGGGGTGAA 88
consensus_1936#1      TTGGTCGGCAAGACGGTAAACAAACAAAGCGTGACACTTATCCGGTCACTCGGGGGTGAA 120
                      ************************************************************

consensus_1936#0      AATACCGACAGTGTGGTGTAACGTGCAGCTTCGCTTCAGAACCGGCACCAAACATGAGAT 148
consensus_1936#1      AATACCGACAGTGTGGTGTAACGTGCAGCTTCGCTTCAGAACCGGCACCAAACATGAGAT 180
                      ************************************************************

consensus_1936#0      GCTCTAGGTGGCCCCTGTTACCCCTGCTGCTGGTGCTGACCGTTCAGCAGTGTGCCGGCC 208
consensus_1936#1      GCTCTAGGTGGCCCCTGTTACCCCTGCTGCTGGTGCTGACCGTTCAGCAGTGTGCCGGCC 240
                      ************************************************************

consensus_1936#0      AGCGGGAAGTGTTTCGGCTGTTCGCGAACTGT-CGCTACGGCAAGCCCAACTTTGATCCG 267
consensus_1936#1      AGCGGGAAGTGTTTCGGCTGTTCGCGAACTGTACGCTACGGCAAGCCCAACTTTGATCCG 300
                      ******************************** ***************************

consensus_1936#0      TGCATCAAGAAAGCGTTCAACGCGCTGCGACCATGGTTTAAGACAGGTTTGCCCGAGTTT 327
consensus_1936#1      TGCATCAAGAAAGCGTTCAACGCGCTGCGACCATGGTTTAAGACAGGTTTGCCCGAGTTT 360
                      ************************************************************

consensus_1936#0      AACGTGGCCCCGTTCGATCCGCACCGGGCCGAATTCATCGAGCAGCGGCGGGGCGATCTC 387
consensus_1936#1      AACGTGGCCCCGTTCGATCCGCACCGGGCCGAATTCATCGAGCAGCGGCGGG-CGATCTC 419
                      **************************************************** *******

consensus_1936#0      GGCGGGCTCGGCGGCTACCGGTTGCTGCTGTCCAACGTGTCCGAGTACGGCTGGATGCAG 447
consensus_1936#1      GGCGGGCTCGGCGGCTACCGGTTGCTGCTGTCCAACGTGTCCGAGTACGGCTGGATGCAG 479
                      ************************************************************

consensus_1936#0      TCGGAGGTGACCAAGTACCGGACCGAGCCGAAGCACGACCGCATCGTGTACTCGCAGTTC 507
consensus_1936#1      TCGGAGGTGACCAAGTACCGGAC-GAGCCGAAGCACGACCGCATCGTGTACTCGCAGTTC 538
                      *********************** ************************************

consensus_1936#0      TTCCCGGAGAAATCGCTCGACGGCGGCTACGACTTCCAGTCGAAGATTCTCGGCCTGCCG 567
consensus_1936#1      TTCCCGGAGAAATCGCTCGACGGCGGCTACGACTTCCAGTCGAAGATTCTCGGC-TGCCG 597
                      ****************************************************** *****

consensus_1936#0      CGCCATACGCGGGGTGTGTGGAATCTGACGCTGTACAACTACAGCCAGACGACGACGGTT 627
consensus_1936#1      CGCCATACGCGGG-TGTGTGGNATCTGACGCTGTACAA-TACAGCCAGACGACGACGGT- 654
                      ************* ******* **************** ******************** 

consensus_1936#0      AACGCGCATCGGGTGGGACCAAGGGGGGCTGCTTGAAAGGTGCCGGGTTCCGAGGAATCG 687
consensus_1936#1      GACGCGCATCGGT--GGAC----------------------------------------- 671
                       ***********   ****                                         

consensus_1936#0      ACAANGAATCGGGCGATATTGAAGCTTGCACGATTCTCCGAACCTTGGTTTCATCGGGGC 747
consensus_1936#1      ------------------------------------------------------------
                                                                                  

consensus_1936#0      CGAAAAATTTTATCGNGAAATCAATTGNCCNGACATTTCTTTCATTCAAACACGAATTTT 807
consensus_1936#1      ------------------------------------------------------------
                                                                                  

consensus_1936#0      TGGGCCAACCCGAATTTTCCCCGTTTCAATNNCAAACCCCNTTTATTCACAGAATTCTCC 867
consensus_1936#1      ------------------------------------------------------------
                                                                                  

consensus_1936#0      GTAAGGTTTCCAC 880
consensus_1936#1      -------------
                                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)