These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1936#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 880 fasta sequence [GCCAGAATGCCATGAGGCGCGAAGTGCATTGGTCGGCAAGACGGTAAACAAACAAAGCGTGACACTTATCCGGTCACTCGGGGGTGAAAATACCGACAGTGTGGTGTAACGTGCAGCTTCGCTTCAGAACCGGCACCAAACATGAGATGCTCTAGGTGGCCCCTGTTACCCCTGCTGCTGGTGCTGACCGTTCAGCAGTGTGCCGGCCAGCGGGAAGTGTTTCGGCTGTTCGCGAACTGTCGCTACGGCAAGCCCAACTTTGATCCGTGCATCAAGAAAGCGTTCAACGCGCTGCGACCATGGTTTAAGACAGGTTTGCCCGAGTTTAACGTGGCCCCGTTCGATCCGCACCGGGCCGAATTCATCGAGCAGCGGCGGGGCGATCTCGGCGGGCTCGGCGGCTACCGGTTGCTGCTGTCCAACGTGTCCGAGTACGGCTGGATGCAGTCGGAGGTGACCAAGTACCGGACCGAGCCGAAGCACGACCGCATCGTGTACTCGCAGTTCTTCCCGGAGAAATCGCTCGACGGCGGCTACGACTTCCAGTCGAAGATTCTCGGCCTGCCGCGCCATACGCGGGGTGTGTGGAATCTGACGCTGTACAACTACAGCCAGACGACGACGGTTAACGCGCATCGGGTGGGACCAAGGGGGGCTGCTTGAAAGGTGCCGGGTTCCGAGGAATCGACAANGAATCGGGCGATATTGAAGCTTGCACGATTCTCCGAACCTTGGTTTCATCGGGGCCGAAAAATTTTATCGNGAAATCAATTGNCCNGACATTTCTTTCATTCAAACACGAATTTTTGGGCCAACCCGAATTTTCCCCGTTTCAATNNCAAACCCCNTTTATTCACAGAATTCTCCGTAAGGTTTCCAC] [+] EMBL BX467882 [GCCAGAATGCCATGAGGCGCGAAGTGCATTGGTCGGCAAGACGGTAAACAAACAAAGCGTGACACTTATCCGGTCACTCGGGGGTGAAAATACCGACAGTGTGGTGTAACGTGCAGCTTCGCTTCAGAACCGGCACCAAACATGAGATGCTCTAGGTGGCCCCTGTTACCCCTGCTGCTGGTGCTGACCGTTCAGCAGTGTGCCGGCCAGCGGGAAGTGTTTCGGCTGTTCGCGAACTGTCGCTACGGCAAGCCCAACTTTGATCCGTGCATCAAGAAAGCGTTCAACGCGCTGCGACCATGGTTTAAGACAGGTTTGCCCGAGTTTAACGTGGCCCCGTTCGATCCGCACCGGGCCGAATTCATCGAGCAGCGGCGGGGCGATCTCGGCGGGCTCGGCGGCTACCGGTTGCTGCTGTCCAACGTGTCCGAGTACGGCTGGATGCAGTCGGAGGTGACCAAGTACCGGACCGAGCCGAAGCACGACCGCATCGTGTACTCGCAGTTCTTCCCGGAGAAATCGCTCGACGGCGGCTACGACTTCCAGTCGAAGATTCTCGGCCTGCCGCGCCATACGCGGGGTGTGTGGAATCTGACGCTGTACAACTACAGCCAGACGACGACGGTTAACGCGCATCGGGTGGGACCAAGGGGGGCTGCTTGAAAGGTGCCGGGTTCCGAGGAATCGACAANGAATCGGGCGATATTGAAGCTTGCACGATTCTCCGAACCTTGGTTTCATCGGGGCCGAAAAATTTTATCGNGAAATCAATTGNCCNGACATTTCTTTCATTCAAACACGAATTTTTGGGCCAACCCGAATTTTCCCCGTTTCAATNNCAAACCCCNTTTATTCACAGAATTCTCCGTAAGGTTTCCAC] consensusID : consensus_1936#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence [AATCCCCCGAGGTTAACCAAGAGCTAGCTAGACATCGTCTCGAACCTCCGNTGAAGTGCATTGGTCGGCAAGACGGTAAACAAACAAAGCGTGACACTTATCCGGTCACTCGGGGGTGAAAATACCGACAGTGTGGTGTAACGTGCAGCTTCGCTTCAGAACCGGCACCAAACATGAGATGCTCTAGGTGGCCCCTGTTACCCCTGCTGCTGGTGCTGACCGTTCAGCAGTGTGCCGGCCAGCGGGAAGTGTTTCGGCTGTTCGCGAACTGTACGCTACGGCAAGCCCAACTTTGATCCGTGCATCAAGAAAGCGTTCAACGCGCTGCGACCATGGTTTAAGACAGGTTTGCCCGAGTTTAACGTGGCCCCGTTCGATCCGCACCGGGCCGAATTCATCGAGCAGCGGCGGGCGATCTCGGCGGGCTCGGCGGCTACCGGTTGCTGCTGTCCAACGTGTCCGAGTACGGCTGGATGCAGTCGGAGGTGACCAAGTACCGGACGAGCCGAAGCACGACCGCATCGTGTACTCGCAGTTCTTCCCGGAGAAATCGCTCGACGGCGGCTACGACTTCCAGTCGAAGATTCTCGGCTGCCGCGCCATACGCGGGTGTGTGGNATCTGACGCTGTACAATACAGCCAGACGACGACGGTGACGCGCATCGGTGGAC] [+] EMBL AL694801 [AATCCCCCGAGGTTAACCAAGAGCTAGCTAGACATCGTCTCGAACCTCCGNTGAAGTGCATTGGTCGGCAAGACGGTAAACAAACAAAGCGTGACACTTATCCGGTCACTCGGGGGTGAAAATACCGACAGTGTGGTGTAACGTGCAGCTTCGCTTCAGAACCGGCACCAAACATGAGATGCTCTAGGTGGCCCCTGTTACCCCTGCTGCTGGTGCTGACCGTTCAGCAGTGTGCCGGCCAGCGGGAAGTGTTTCGGCTGTTCGCGAACTGTACGCTACGGCAAGCCCAACTTTGATCCGTGCATCAAGAAAGCGTTCAACGCGCTGCGACCATGGTTTAAGACAGGTTTGCCCGAGTTTAACGTGGCCCCGTTCGATCCGCACCGGGCCGAATTCATCGAGCAGCGGCGGGCGATCTCGGCGGGCTCGGCGGCTACCGGTTGCTGCTGTCCAACGTGTCCGAGTACGGCTGGATGCAGTCGGAGGTGACCAAGTACCGGACGAGCCGAAGCACGACCGCATCGTGTACTCGCAGTTCTTCCCGGAGAAATCGCTCGACGGCGGCTACGACTTCCAGTCGAAGATTCTCGGCTGCCGCGCCATACGCGGGTGTGTGGNATCTGACGCTGTACAATACAGCCAGACGACGACGGTGACGCGCATCGGTGGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1936#0 --------------------------GCCAGAA--TGCCATGAGGC----GCGAAGTGCA 28 consensus_1936#1 AATCCCCCGAGGTTAACCAAGAGCTAGCTAGACATCGTCTCGAACCTCCGNTGAAGTGCA 60 ** *** * * ** * ******** consensus_1936#0 TTGGTCGGCAAGACGGTAAACAAACAAAGCGTGACACTTATCCGGTCACTCGGGGGTGAA 88 consensus_1936#1 TTGGTCGGCAAGACGGTAAACAAACAAAGCGTGACACTTATCCGGTCACTCGGGGGTGAA 120 ************************************************************ consensus_1936#0 AATACCGACAGTGTGGTGTAACGTGCAGCTTCGCTTCAGAACCGGCACCAAACATGAGAT 148 consensus_1936#1 AATACCGACAGTGTGGTGTAACGTGCAGCTTCGCTTCAGAACCGGCACCAAACATGAGAT 180 ************************************************************ consensus_1936#0 GCTCTAGGTGGCCCCTGTTACCCCTGCTGCTGGTGCTGACCGTTCAGCAGTGTGCCGGCC 208 consensus_1936#1 GCTCTAGGTGGCCCCTGTTACCCCTGCTGCTGGTGCTGACCGTTCAGCAGTGTGCCGGCC 240 ************************************************************ consensus_1936#0 AGCGGGAAGTGTTTCGGCTGTTCGCGAACTGT-CGCTACGGCAAGCCCAACTTTGATCCG 267 consensus_1936#1 AGCGGGAAGTGTTTCGGCTGTTCGCGAACTGTACGCTACGGCAAGCCCAACTTTGATCCG 300 ******************************** *************************** consensus_1936#0 TGCATCAAGAAAGCGTTCAACGCGCTGCGACCATGGTTTAAGACAGGTTTGCCCGAGTTT 327 consensus_1936#1 TGCATCAAGAAAGCGTTCAACGCGCTGCGACCATGGTTTAAGACAGGTTTGCCCGAGTTT 360 ************************************************************ consensus_1936#0 AACGTGGCCCCGTTCGATCCGCACCGGGCCGAATTCATCGAGCAGCGGCGGGGCGATCTC 387 consensus_1936#1 AACGTGGCCCCGTTCGATCCGCACCGGGCCGAATTCATCGAGCAGCGGCGGG-CGATCTC 419 **************************************************** ******* consensus_1936#0 GGCGGGCTCGGCGGCTACCGGTTGCTGCTGTCCAACGTGTCCGAGTACGGCTGGATGCAG 447 consensus_1936#1 GGCGGGCTCGGCGGCTACCGGTTGCTGCTGTCCAACGTGTCCGAGTACGGCTGGATGCAG 479 ************************************************************ consensus_1936#0 TCGGAGGTGACCAAGTACCGGACCGAGCCGAAGCACGACCGCATCGTGTACTCGCAGTTC 507 consensus_1936#1 TCGGAGGTGACCAAGTACCGGAC-GAGCCGAAGCACGACCGCATCGTGTACTCGCAGTTC 538 *********************** ************************************ consensus_1936#0 TTCCCGGAGAAATCGCTCGACGGCGGCTACGACTTCCAGTCGAAGATTCTCGGCCTGCCG 567 consensus_1936#1 TTCCCGGAGAAATCGCTCGACGGCGGCTACGACTTCCAGTCGAAGATTCTCGGC-TGCCG 597 ****************************************************** ***** consensus_1936#0 CGCCATACGCGGGGTGTGTGGAATCTGACGCTGTACAACTACAGCCAGACGACGACGGTT 627 consensus_1936#1 CGCCATACGCGGG-TGTGTGGNATCTGACGCTGTACAA-TACAGCCAGACGACGACGGT- 654 ************* ******* **************** ******************** consensus_1936#0 AACGCGCATCGGGTGGGACCAAGGGGGGCTGCTTGAAAGGTGCCGGGTTCCGAGGAATCG 687 consensus_1936#1 GACGCGCATCGGT--GGAC----------------------------------------- 671 *********** **** consensus_1936#0 ACAANGAATCGGGCGATATTGAAGCTTGCACGATTCTCCGAACCTTGGTTTCATCGGGGC 747 consensus_1936#1 ------------------------------------------------------------ consensus_1936#0 CGAAAAATTTTATCGNGAAATCAATTGNCCNGACATTTCTTTCATTCAAACACGAATTTT 807 consensus_1936#1 ------------------------------------------------------------ consensus_1936#0 TGGGCCAACCCGAATTTTCCCCGTTTCAATNNCAAACCCCNTTTATTCACAGAATTCTCC 867 consensus_1936#1 ------------------------------------------------------------ consensus_1936#0 GTAAGGTTTCCAC 880 consensus_1936#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||