cluster # 1938

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Anopheles gambiae
cluster # 1938 cluster # 1938 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1938#0 length = 954 sequences # 1

consensus_1938#1 length = 696 sequences # 1

consensusID : consensus_1938#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 954
fasta sequence

                              [CGATCAAATAATGGCGGCGTCTAGTAAGCGTATCCAATTCAAAATAAAGCAAAAAGTATGAGTACGGAGGAAATCAGCTCATCTGGAACAGATGATGGACCACAATCGCTTGCCCGGCGGATAATACACTACTTCTACCACCGGCAAGCGATCGCCAAGGATGCGTGGGACATTGCCTTCTGGCAGGAGTTTCGCCGCCATCATCCAGACGTAACACTCGAACCGAAAGCGCTGCGGTCGTACTTTTTCCATGAAGTAATGCGCAACCCGCGCGAGTGGAGCAATCTCTCCTACGAGGTGATCCAGTACCTTAACCCGCTGTTTAACCGGATCCGCGAGGAGGTGCTCGAGTACCGGGATCTGGTCGAAGGTATCGATTACATAACGCCCAGTACGGCACAGATCCGCAGCTTCGTGGCCGCCGCACTAAGCGAACTGCTCTGGACGGAGGATGAAAACGAGACGAAGCCGACGCTCGACGCACAGGAATGCTTATCGCGCATTGCTGTGCTGACGTCCAATTCGATTGCGTTGCTCAACTGCATCGAGCCGGGCATGGCATGCTATGAGCGGTTTCATGGGGCGGATCCAGTGGAGAGGGCGGTTTTGCCGGAGGATGATACACCGGCGAGTGGACTAGAGGTGTCCGGTACACCCCGGATGCACCCGCTGGCATCATCCACGCCGATACCATCGACAAGCGGCCAGCCGGGTACTGTCCGTGGGCCCATTATTTCTTCCCGCACGCCAGCCTCCGTCCTGCGGCATGTTCGGAGCAAGCCCCGGAAGGGTGCATTCAAGAGAAATATCATGTAGAGTGAGTGGTTGGTTGCGCATTATTACATACTTACGTTCCTGTTGAATAATTTAAAGAACTTAAATACACTTCCAATGAACTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCAAAGGTGCC]

[+] EMBL CNS09DUD             [CGATCAAATAATGGCGGCGTCTAGTAAGCGTATCCAATTCAAAATAAAGCAAAAAGTATGAGTACGGAGGAAATCAGCTCATCTGGAACAGATGATGGACCACAATCGCTTGCCCGGCGGATAATACACTACTTCTACCACCGGCAAGCGATCGCCAAGGATGCGTGGGACATTGCCTTCTGGCAGGAGTTTCGCCGCCATCATCCAGACGTAACACTCGAACCGAAAGCGCTGCGGTCGTACTTTTTCCATGAAGTAATGCGCAACCCGCGCGAGTGGAGCAATCTCTCCTACGAGGTGATCCAGTACCTTAACCCGCTGTTTAACCGGATCCGCGAGGAGGTGCTCGAGTACCGGGATCTGGTCGAAGGTATCGATTACATAACGCCCAGTACGGCACAGATCCGCAGCTTCGTGGCCGCCGCACTAAGCGAACTGCTCTGGACGGAGGATGAAAACGAGACGAAGCCGACGCTCGACGCACAGGAATGCTTATCGCGCATTGCTGTGCTGACGTCCAATTCGATTGCGTTGCTCAACTGCATCGAGCCGGGCATGGCATGCTATGAGCGGTTTCATGGGGCGGATCCAGTGGAGAGGGCGGTTTTGCCGGAGGATGATACACCGGCGAGTGGACTAGAGGTGTCCGGTACACCCCGGATGCACCCGCTGGCATCATCCACGCCGATACCATCGACAAGCGGCCAGCCGGGTACTGTCCGTGGGCCCATTATTTCTTCCCGCACGCCAGCCTCCGTCCTGCGGCATGTTCGGAGCAAGCCCCGGAAGGGTGCATTCAAGAGAAATATCATGTAGAGTGAGTGGTTGGTTGCGCATTATTACATACTTACGTTCCTGTTGAATAATTTAAAGAACTTAAATACACTTCCAATGAACTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCAAAGGTGCC]




>consensus_1938#0
CGATCAAATAATGGCGGCGTCTAGTAAGCGTATCCAATTCAAAATAAAGCAAAAAGTATG
AGTACGGAGGAAATCAGCTCATCTGGAACAGATGATGGACCACAATCGCTTGCCCGGCGG
ATAATACACTACTTCTACCACCGGCAAGCGATCGCCAAGGATGCGTGGGACATTGCCTTC
TGGCAGGAGTTTCGCCGCCATCATCCAGACGTAACACTCGAACCGAAAGCGCTGCGGTCG
TACTTTTTCCATGAAGTAATGCGCAACCCGCGCGAGTGGAGCAATCTCTCCTACGAGGTG
ATCCAGTACCTTAACCCGCTGTTTAACCGGATCCGCGAGGAGGTGCTCGAGTACCGGGAT
CTGGTCGAAGGTATCGATTACATAACGCCCAGTACGGCACAGATCCGCAGCTTCGTGGCC
GCCGCACTAAGCGAACTGCTCTGGACGGAGGATGAAAACGAGACGAAGCCGACGCTCGAC
GCACAGGAATGCTTATCGCGCATTGCTGTGCTGACGTCCAATTCGATTGCGTTGCTCAAC
TGCATCGAGCCGGGCATGGCATGCTATGAGCGGTTTCATGGGGCGGATCCAGTGGAGAGG
GCGGTTTTGCCGGAGGATGATACACCGGCGAGTGGACTAGAGGTGTCCGGTACACCCCGG
ATGCACCCGCTGGCATCATCCACGCCGATACCATCGACAAGCGGCCAGCCGGGTACTGTC
CGTGGGCCCATTATTTCTTCCCGCACGCCAGCCTCCGTCCTGCGGCATGTTCGGAGCAAG
CCCCGGAAGGGTGCATTCAAGAGAAATATCATGTAGAGTGAGTGGTTGGTTGCGCATTAT
TACATACTTACGTTCCTGTTGAATAATTTAAAGAACTTAAATACACTTCCAATGAACTCC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCAAAGGTGCC

consensusID : consensus_1938#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 696
fasta sequence

                              [CCGCAAATAATGGCGGCGTCTAGTAAGCGTATCCAATTCAAAATAAAGCAAAAAGTATGAGTACGGAGGAAATCAGCTCATCTGGAACAGATGATGGACCACAATCGCTTGCCCGGCGGATAATACACTACTTCTACCACCGGCAAGCGATCGCCAAGGATGCGTGGGACATTGCCTTCTGGCAGGAGTTTCGCCGCCATCATCCACACGTAACACTCGAGCCGAAAGCGCTGCGGTCGTACTTTTTCCATGAAGTAATGCGCAACCCGCGCGAGTGGAGCAATCTCTCCTACGAGGTGATCCAGTACCTTAACCCGCTGTTTAACCGGATCCGCGAGGAGGTGCTCGAGTACCGGGATCTGGTCGAAGGTATCGATTACGTGTACGCGGAAGATCCGGCCGATCTACGCACGGAAGCGAACGGCACGCAGATGCCTCCTTTGTGTTTGGAGCCGGGCGGTGGGTTGGTTGCTCCTTCACGCGCCACCAAGCGCTACATAACGCCCAGTACGGCACAGATCCGCAGCTTCGTGGCCGCCGCACTAAGCGAACTGCTCTGGACGGAGGATGAAAACGAGACGAAGCCGACGCTCGACGCACAGGAATGCTTATCGCGCATTGCTGTGCTGACGTCCAATTCGATTGCGTTGCTCAACTGCATCGAGCCGGGCATGGCATGCTATGAGCGGTTTCATG]

[+] EMBL BM603269             [CCGCAAATAATGGCGGCGTCTAGTAAGCGTATCCAATTCAAAATAAAGCAAAAAGTATGAGTACGGAGGAAATCAGCTCATCTGGAACAGATGATGGACCACAATCGCTTGCCCGGCGGATAATACACTACTTCTACCACCGGCAAGCGATCGCCAAGGATGCGTGGGACATTGCCTTCTGGCAGGAGTTTCGCCGCCATCATCCACACGTAACACTCGAGCCGAAAGCGCTGCGGTCGTACTTTTTCCATGAAGTAATGCGCAACCCGCGCGAGTGGAGCAATCTCTCCTACGAGGTGATCCAGTACCTTAACCCGCTGTTTAACCGGATCCGCGAGGAGGTGCTCGAGTACCGGGATCTGGTCGAAGGTATCGATTACGTGTACGCGGAAGATCCGGCCGATCTACGCACGGAAGCGAACGGCACGCAGATGCCTCCTTTGTGTTTGGAGCCGGGCGGTGGGTTGGTTGCTCCTTCACGCGCCACCAAGCGCTACATAACGCCCAGTACGGCACAGATCCGCAGCTTCGTGGCCGCCGCACTAAGCGAACTGCTCTGGACGGAGGATGAAAACGAGACGAAGCCGACGCTCGACGCACAGGAATGCTTATCGCGCATTGCTGTGCTGACGTCCAATTCGATTGCGTTGCTCAACTGCATCGAGCCGGGCATGGCATGCTATGAGCGGTTTCATG]




>consensus_1938#1
CCGCAAATAATGGCGGCGTCTAGTAAGCGTATCCAATTCAAAATAAAGCAAAAAGTATGA
GTACGGAGGAAATCAGCTCATCTGGAACAGATGATGGACCACAATCGCTTGCCCGGCGGA
TAATACACTACTTCTACCACCGGCAAGCGATCGCCAAGGATGCGTGGGACATTGCCTTCT
GGCAGGAGTTTCGCCGCCATCATCCACACGTAACACTCGAGCCGAAAGCGCTGCGGTCGT
ACTTTTTCCATGAAGTAATGCGCAACCCGCGCGAGTGGAGCAATCTCTCCTACGAGGTGA
TCCAGTACCTTAACCCGCTGTTTAACCGGATCCGCGAGGAGGTGCTCGAGTACCGGGATC
TGGTCGAAGGTATCGATTACGTGTACGCGGAAGATCCGGCCGATCTACGCACGGAAGCGA
ACGGCACGCAGATGCCTCCTTTGTGTTTGGAGCCGGGCGGTGGGTTGGTTGCTCCTTCAC
GCGCCACCAAGCGCTACATAACGCCCAGTACGGCACAGATCCGCAGCTTCGTGGCCGCCG
CACTAAGCGAACTGCTCTGGACGGAGGATGAAAACGAGACGAAGCCGACGCTCGACGCAC
AGGAATGCTTATCGCGCATTGCTGTGCTGACGTCCAATTCGATTGCGTTGCTCAACTGCA
TCGAGCCGGGCATGGCATGCTATGAGCGGTTTCATG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1938#0      CGATCAAATAATGGCGGCGTCTAGTAAGCGTATCCAATTCAAAATAAAGCAAAAAGTATG 60
consensus_1938#1      -CCGCAAATAATGGCGGCGTCTAGTAAGCGTATCCAATTCAAAATAAAGCAAAAAGTATG 59
                          ********************************************************

consensus_1938#0      AGTACGGAGGAAATCAGCTCATCTGGAACAGATGATGGACCACAATCGCTTGCCCGGCGG 120
consensus_1938#1      AGTACGGAGGAAATCAGCTCATCTGGAACAGATGATGGACCACAATCGCTTGCCCGGCGG 119
                      ************************************************************

consensus_1938#0      ATAATACACTACTTCTACCACCGGCAAGCGATCGCCAAGGATGCGTGGGACATTGCCTTC 180
consensus_1938#1      ATAATACACTACTTCTACCACCGGCAAGCGATCGCCAAGGATGCGTGGGACATTGCCTTC 179
                      ************************************************************

consensus_1938#0      TGGCAGGAGTTTCGCCGCCATCATCCAGACGTAACACTCGAACCGAAAGCGCTGCGGTCG 240
consensus_1938#1      TGGCAGGAGTTTCGCCGCCATCATCCACACGTAACACTCGAGCCGAAAGCGCTGCGGTCG 239
                      *************************** ************* ******************

consensus_1938#0      TACTTTTTCCATGAAGTAATGCGCAACCCGCGCGAGTGGAGCAATCTCTCCTACGAGGTG 300
consensus_1938#1      TACTTTTTCCATGAAGTAATGCGCAACCCGCGCGAGTGGAGCAATCTCTCCTACGAGGTG 299
                      ************************************************************

consensus_1938#0      ATCCAGTACCTTAACCCGCTGTTTAACCGGATCCGCGAGGAGGTGCTCGAGTACCGGGAT 360
consensus_1938#1      ATCCAGTACCTTAACCCGCTGTTTAACCGGATCCGCGAGGAGGTGCTCGAGTACCGGGAT 359
                      ************************************************************

consensus_1938#0      CTGGTCGAAGGTATCGATTAC--------------------------------------- 381
consensus_1938#1      CTGGTCGAAGGTATCGATTACGTGTACGCGGAAGATCCGGCCGATCTACGCACGGAAGCG 419
                      *********************                                       

consensus_1938#0      ------------------------------------------------------------
consensus_1938#1      AACGGCACGCAGATGCCTCCTTTGTGTTTGGAGCCGGGCGGTGGGTTGGTTGCTCCTTCA 479
                                                                                  

consensus_1938#0      ------------------ATAACGCCCAGTACGGCACAGATCCGCAGCTTCGTGGCCGCC 423
consensus_1938#1      CGCGCCACCAAGCGCTACATAACGCCCAGTACGGCACAGATCCGCAGCTTCGTGGCCGCC 539
                                        ******************************************

consensus_1938#0      GCACTAAGCGAACTGCTCTGGACGGAGGATGAAAACGAGACGAAGCCGACGCTCGACGCA 483
consensus_1938#1      GCACTAAGCGAACTGCTCTGGACGGAGGATGAAAACGAGACGAAGCCGACGCTCGACGCA 599
                      ************************************************************

consensus_1938#0      CAGGAATGCTTATCGCGCATTGCTGTGCTGACGTCCAATTCGATTGCGTTGCTCAACTGC 543
consensus_1938#1      CAGGAATGCTTATCGCGCATTGCTGTGCTGACGTCCAATTCGATTGCGTTGCTCAACTGC 659
                      ************************************************************

consensus_1938#0      ATCGAGCCGGGCATGGCATGCTATGAGCGGTTTCATGGGGCGGATCCAGTGGAGAGGGCG 603
consensus_1938#1      ATCGAGCCGGGCATGGCATGCTATGAGCGGTTTCATG----------------------- 696
                      *************************************                       

consensus_1938#0      GTTTTGCCGGAGGATGATACACCGGCGAGTGGACTAGAGGTGTCCGGTACACCCCGGATG 663
consensus_1938#1      ------------------------------------------------------------
                                                                                  

consensus_1938#0      CACCCGCTGGCATCATCCACGCCGATACCATCGACAAGCGGCCAGCCGGGTACTGTCCGT 723
consensus_1938#1      ------------------------------------------------------------
                                                                                  

consensus_1938#0      GGGCCCATTATTTCTTCCCGCACGCCAGCCTCCGTCCTGCGGCATGTTCGGAGCAAGCCC 783
consensus_1938#1      ------------------------------------------------------------
                                                                                  

consensus_1938#0      CGGAAGGGTGCATTCAAGAGAAATATCATGTAGAGTGAGTGGTTGGTTGCGCATTATTAC 843
consensus_1938#1      ------------------------------------------------------------
                                                                                  

consensus_1938#0      ATACTTACGTTCCTGTTGAATAATTTAAAGAACTTAAATACACTTCCAATGAACTCCAAA 903
consensus_1938#1      ------------------------------------------------------------
                                                                                  

consensus_1938#0      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCAAAGGTGCC 954
consensus_1938#1      ---------------------------------------------------