cluster # 1939

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Anopheles gambiae
cluster # 1939 cluster # 1939 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1939#0 length = 684 sequences # 1

consensus_1939#1 length = 618 sequences # 1

consensusID : consensus_1939#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 684
fasta sequence

                              [CCGGGCAGCACACACGCACCAAAAACACATACACACAGTGAAGTACCAGGCAAAATAATACTTCAGGTCGCAAACCCGGAAAATCAAAAACGGAAATTCCAGAACAAAGCAACCATCAACCAGCCCAGGGCCCCAACCGGGCAAGGAACGCGGACCATCGCATCCATCAACACACACACATCAGCAGCAGCAGTGCACCCCGGAGGAGACCAAATAGCAAAGCACTTTCTCTCCCTCCCCACCACACAAGAAGAAGAAGCCGATGATGATGCCGCCTCGTAGTTGATTGATATTGTAGCATAGCTGCCTTCTCGCGTTCAACCACAGCGCGAGTTTCCGCCGCGACCTCAGGATTGTTTTTCTTGTTTTTTGTTTCGGTAGCAGTAAGTTTAGTGAAGTCAGTGTAAGGAGAGGGCAGACATCCCTATAGAGCAAATATACAATGAGCGACGTTATCAAGTCCCGGCGTGAGAAATCACAGAAGCGCAAGATGCTGCTCGCTCAAACGTTCGGTGTGTCCTGCGTGGAAGACCTGAAGCACGTACTGGGCACTGCGGAAGACTCACCGATCAAATCGCAACGGTACGAGGACGAGGAAGCCAGCACCTCGAAAACGGTCCAAACTGCCGAGGGTTTAGTGTATCGGGATTCGTCCACCTTTCTAAAGGGCACACAATCGTCCAA]

[+] EMBL BM585918             [CCGGGCAGCACACACGCACCAAAAACACATACACACAGTGAAGTACCAGGCAAAATAATACTTCAGGTCGCAAACCCGGAAAATCAAAAACGGAAATTCCAGAACAAAGCAACCATCAACCAGCCCAGGGCCCCAACCGGGCAAGGAACGCGGACCATCGCATCCATCAACACACACACATCAGCAGCAGCAGTGCACCCCGGAGGAGACCAAATAGCAAAGCACTTTCTCTCCCTCCCCACCACACAAGAAGAAGAAGCCGATGATGATGCCGCCTCGTAGTTGATTGATATTGTAGCATAGCTGCCTTCTCGCGTTCAACCACAGCGCGAGTTTCCGCCGCGACCTCAGGATTGTTTTTCTTGTTTTTTGTTTCGGTAGCAGTAAGTTTAGTGAAGTCAGTGTAAGGAGAGGGCAGACATCCCTATAGAGCAAATATACAATGAGCGACGTTATCAAGTCCCGGCGTGAGAAATCACAGAAGCGCAAGATGCTGCTCGCTCAAACGTTCGGTGTGTCCTGCGTGGAAGACCTGAAGCACGTACTGGGCACTGCGGAAGACTCACCGATCAAATCGCAACGGTACGAGGACGAGGAAGCCAGCACCTCGAAAACGGTCCAAACTGCCGAGGGTTTAGTGTATCGGGATTCGTCCACCTTTCTAAAGGGCACACAATCGTCCAA]




>consensus_1939#0
CCGGGCAGCACACACGCACCAAAAACACATACACACAGTGAAGTACCAGGCAAAATAATA
CTTCAGGTCGCAAACCCGGAAAATCAAAAACGGAAATTCCAGAACAAAGCAACCATCAAC
CAGCCCAGGGCCCCAACCGGGCAAGGAACGCGGACCATCGCATCCATCAACACACACACA
TCAGCAGCAGCAGTGCACCCCGGAGGAGACCAAATAGCAAAGCACTTTCTCTCCCTCCCC
ACCACACAAGAAGAAGAAGCCGATGATGATGCCGCCTCGTAGTTGATTGATATTGTAGCA
TAGCTGCCTTCTCGCGTTCAACCACAGCGCGAGTTTCCGCCGCGACCTCAGGATTGTTTT
TCTTGTTTTTTGTTTCGGTAGCAGTAAGTTTAGTGAAGTCAGTGTAAGGAGAGGGCAGAC
ATCCCTATAGAGCAAATATACAATGAGCGACGTTATCAAGTCCCGGCGTGAGAAATCACA
GAAGCGCAAGATGCTGCTCGCTCAAACGTTCGGTGTGTCCTGCGTGGAAGACCTGAAGCA
CGTACTGGGCACTGCGGAAGACTCACCGATCAAATCGCAACGGTACGAGGACGAGGAAGC
CAGCACCTCGAAAACGGTCCAAACTGCCGAGGGTTTAGTGTATCGGGATTCGTCCACCTT
TCTAAAGGGCACACAATCGTCCAA

consensusID : consensus_1939#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 618
fasta sequence

                              [CCGCCCACGCGTCCGACCCGGAAAATCAAAAACGGAAATTTCAGAACAAAGCAACCATCAACCTGCCCAGGGCCCCAACCGGGCAAGGAACGCGGACCATCGCATCCATCAACACACACACATCAGCAGCAGCAGTGCGCCCGGAGGAGACCAAATAGCAAAGCACTTTCTCTCCCTCCCCACCACACAAGAAGAAGAAGCCGATGATGATGCCGCCTCGTAGTTGATTGATATTGTAGCATAGCTGCCTTCTCGCGTTCAACTACAGCGCGAGTTTCCGCCGCGACCTCAGGATTGTTTTTCTTGTTTTTTGTTTCGGTAGCAGTAAGTTTTGTGAAGTCAGTGTAAGGAGAGGGCAGACATCCCTATAGAGCAAATATACAATGAGCGACGTTATCAAGTCCCGGCGTGAGAAATCACAGAAGCGCAAGATGCTGCTCGCTCAAACGTTTGGTGTGTCCCTGCGTGGAAGACCTGAAGCACGTACTGGGCACTGCGGAAGACTCACCGATCAAATCGCAACGGTACGAGGACGAGGAAGCAAGCACCTCGAAAACGGTCCAAACTGCCGAGGGGTTAGTGTATTCGGGGATTCCGTCCACCTTTCTAAAGGGCACA]

[+] EMBL BM583949             [CCGCCCACGCGTCCGACCCGGAAAATCAAAAACGGAAATTTCAGAACAAAGCAACCATCAACCTGCCCAGGGCCCCAACCGGGCAAGGAACGCGGACCATCGCATCCATCAACACACACACATCAGCAGCAGCAGTGCGCCCGGAGGAGACCAAATAGCAAAGCACTTTCTCTCCCTCCCCACCACACAAGAAGAAGAAGCCGATGATGATGCCGCCTCGTAGTTGATTGATATTGTAGCATAGCTGCCTTCTCGCGTTCAACTACAGCGCGAGTTTCCGCCGCGACCTCAGGATTGTTTTTCTTGTTTTTTGTTTCGGTAGCAGTAAGTTTTGTGAAGTCAGTGTAAGGAGAGGGCAGACATCCCTATAGAGCAAATATACAATGAGCGACGTTATCAAGTCCCGGCGTGAGAAATCACAGAAGCGCAAGATGCTGCTCGCTCAAACGTTTGGTGTGTCCCTGCGTGGAAGACCTGAAGCACGTACTGGGCACTGCGGAAGACTCACCGATCAAATCGCAACGGTACGAGGACGAGGAAGCAAGCACCTCGAAAACGGTCCAAACTGCCGAGGGGTTAGTGTATTCGGGGATTCCGTCCACCTTTCTAAAGGGCACA]




>consensus_1939#1
CCGCCCACGCGTCCGACCCGGAAAATCAAAAACGGAAATTTCAGAACAAAGCAACCATCA
ACCTGCCCAGGGCCCCAACCGGGCAAGGAACGCGGACCATCGCATCCATCAACACACACA
CATCAGCAGCAGCAGTGCGCCCGGAGGAGACCAAATAGCAAAGCACTTTCTCTCCCTCCC
CACCACACAAGAAGAAGAAGCCGATGATGATGCCGCCTCGTAGTTGATTGATATTGTAGC
ATAGCTGCCTTCTCGCGTTCAACTACAGCGCGAGTTTCCGCCGCGACCTCAGGATTGTTT
TTCTTGTTTTTTGTTTCGGTAGCAGTAAGTTTTGTGAAGTCAGTGTAAGGAGAGGGCAGA
CATCCCTATAGAGCAAATATACAATGAGCGACGTTATCAAGTCCCGGCGTGAGAAATCAC
AGAAGCGCAAGATGCTGCTCGCTCAAACGTTTGGTGTGTCCCTGCGTGGAAGACCTGAAG
CACGTACTGGGCACTGCGGAAGACTCACCGATCAAATCGCAACGGTACGAGGACGAGGAA
GCAAGCACCTCGAAAACGGTCCAAACTGCCGAGGGGTTAGTGTATTCGGGGATTCCGTCC
ACCTTTCTAAAGGGCACA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1939#0      CCGGGCAGCACACACGCACCAAAAACACATACACACAGTGAAGTACCAGGCAAAATAATA 60
consensus_1939#1      ----------------------------------------------------------CC 2
                                                                                  

consensus_1939#0      CTTCAGGTCGCAAACCCGGAAAATCAAAAACGGAAATTCCAGAACAAAGCAACCATCAAC 120
consensus_1939#1      GCCCACGCGTCCGACCCGGAAAATCAAAAACGGAAATTTCAGAACAAAGCAACCATCAAC 62
                         ** *   *  ************************* *********************

consensus_1939#0      CAGCCCAGGGCCCCAACCGGGCAAGGAACGCGGACCATCGCATCCATCAACACACACACA 180
consensus_1939#1      CTGCCCAGGGCCCCAACCGGGCAAGGAACGCGGACCATCGCATCCATCAACACACACACA 122
                      * **********************************************************

consensus_1939#0      TCAGCAGCAGCAGTGCACCCCGGAGGAGACCAAATAGCAAAGCACTTTCTCTCCCTCCCC 240
consensus_1939#1      TCAGCAGCAGCAGTGCGCCC-GGAGGAGACCAAATAGCAAAGCACTTTCTCTCCCTCCCC 181
                      **************** *** ***************************************

consensus_1939#0      ACCACACAAGAAGAAGAAGCCGATGATGATGCCGCCTCGTAGTTGATTGATATTGTAGCA 300
consensus_1939#1      ACCACACAAGAAGAAGAAGCCGATGATGATGCCGCCTCGTAGTTGATTGATATTGTAGCA 241
                      ************************************************************

consensus_1939#0      TAGCTGCCTTCTCGCGTTCAACCACAGCGCGAGTTTCCGCCGCGACCTCAGGATTGTTTT 360
consensus_1939#1      TAGCTGCCTTCTCGCGTTCAACTACAGCGCGAGTTTCCGCCGCGACCTCAGGATTGTTTT 301
                      ********************** *************************************

consensus_1939#0      TCTTGTTTTTTGTTTCGGTAGCAGTAAGTTTAGTGAAGTCAGTGTAAGGAGAGGGCAGAC 420
consensus_1939#1      TCTTGTTTTTTGTTTCGGTAGCAGTAAGTTTTGTGAAGTCAGTGTAAGGAGAGGGCAGAC 361
                      ******************************* ****************************

consensus_1939#0      ATCCCTATAGAGCAAATATACAATGAGCGACGTTATCAAGTCCCGGCGTGAGAAATCACA 480
consensus_1939#1      ATCCCTATAGAGCAAATATACAATGAGCGACGTTATCAAGTCCCGGCGTGAGAAATCACA 421
                      ************************************************************

consensus_1939#0      GAAGCGCAAGATGCTGCTCGCTCAAACGTTCGGTGTGTCC-TGCGTGGAAGACCTGAAGC 539
consensus_1939#1      GAAGCGCAAGATGCTGCTCGCTCAAACGTTTGGTGTGTCCCTGCGTGGAAGACCTGAAGC 481
                      ****************************** ********* *******************

consensus_1939#0      ACGTACTGGGCACTGCGGAAGACTCACCGATCAAATCGCAACGGTACGAGGACGAGGAAG 599
consensus_1939#1      ACGTACTGGGCACTGCGGAAGACTCACCGATCAAATCGCAACGGTACGAGGACGAGGAAG 541
                      ************************************************************

consensus_1939#0      CCAGCACCTCGAAAACGGTCCAAACTGCCGAGGGTTTAGTGTATC--GGGATTC-GTCCA 656
consensus_1939#1      CAAGCACCTCGAAAACGGTCCAAACTGCCGAGGGGTTAGTGTATTCGGGGATTCCGTCCA 601
                      * ******************************** *********   ******* *****

consensus_1939#0      CCTTTCTAAAGGGCACACAATCGTCCAA 684
consensus_1939#1      CCTTTCTAAAGGGCACA----------- 618
                      *****************