These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1964#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 940 fasta sequence [GTTTCAAAAATTGTGAATGCCCCTTAATACAGTTCAAATCACAAAAAAAACTGATCTCGTTCAATAAAAAAGCTGTTCTTAGAGAGAGGGGGTTGAAATCTTGCATTTTTTGCATTACGTAATTAAATGATTATGTCCTATCTAATTCATTTTTTTCTTAGGGCGTCCTTTGCATTTCCGTGAGAATGAGCTACGAGAAACGCTTTTTATTGTGCCGGATACAACGGCACTTTTTTTCGCATTTCGTAGTTTTTTTTGAAAAAAATTCTCAAGGGATTCAAAATCTACTTTTTGGCCATCTACATTCCCTACGTCAGCAAAAAGCCTCAATACATTTACATATCGTCGAAAGGCTATTTTCGGTCCAGTAACTCCTCTACCGCTCCAGCTACATTCAACCAAAAACAATCTATTGAACATAAGGTACAAAGCTTCGTGAAGTCGCTCCATTGTTGCTGTGGCCTTCATTTTGGCCTGCAATTTACGCTTCACGTCCTCAAACTGATCCTCTAAACCTAGATTCTGCTCGAAATCAATTAGCTCCTTTTTAGATGCAATCAACGTAATAATTTCCTCGTTTTCTTGCGTTGGCTGTATCATTTCGGGCGTTTCTTGCGGAACTGGATTTTGGTTCGCGTTGAAGCAGCCACTCAATAATCTCGTGCGTTTTGCATAAAAATGTCAACAACGATTTTGGTTAGCATTTGAATTTGTTTGCTGTTTAGCAGGGCAATCTCAGCGCATTTGCAATGATGTTCTGCAGTCCCGCAACAGCGTACAGAAGAAGCTTCGGTGAATTGACGATGCATTGTTCATAGGTTGTAGCAGAGCGAAGAAGATAGGTTTTTATCTCTACGATATTGATGATAGATCATCCGATTTATTTACCAAAAGAGGGGCAACGATCCAGTTGGCCAACAGTTCTCGAGGAATTCCGCAG] [+] EMBL CNS08H0W [GTTTCAAAAATTGTGAATGCCCCTTAATACAGTTCAAATCACAAAAAAAACTGATCTCGTTCAATAAAAAAGCTGTTCTTAGAGAGAGGGGGTTGAAATCTTGCATTTTTTGCATTACGTAATTAAATGATTATGTCCTATCTAATTCATTTTTTTCTTAGGGCGTCCTTTGCATTTCCGTGAGAATGAGCTACGAGAAACGCTTTTTATTGTGCCGGATACAACGGCACTTTTTTTCGCATTTCGTAGTTTTTTTTGAAAAAAATTCTCAAGGGATTCAAAATCTACTTTTTGGCCATCTACATTCCCTACGTCAGCAAAAAGCCTCAATACATTTACATATCGTCGAAAGGCTATTTTCGGTCCAGTAACTCCTCTACCGCTCCAGCTACATTCAACCAAAAACAATCTATTGAACATAAGGTACAAAGCTTCGTGAAGTCGCTCCATTGTTGCTGTGGCCTTCATTTTGGCCTGCAATTTACGCTTCACGTCCTCAAACTGATCCTCTAAACCTAGATTCTGCTCGAAATCAATTAGCTCCTTTTTAGATGCAATCAACGTAATAATTTCCTCGTTTTCTTGCGTTGGCTGTATCATTTCGGGCGTTTCTTGCGGAACTGGATTTTGGTTCGCGTTGAAGCAGCCACTCAATAATCTCGTGCGTTTTGCATAAAAATGTCAACAACGATTTTGGTTAGCATTTGAATTTGTTTGCTGTTTAGCAGGGCAATCTCAGCGCATTTGCAATGATGTTCTGCAGTCCCGCAACAGCGTACAGAAGAAGCTTCGGTGAATTGACGATGCATTGTTCATAGGTTGTAGCAGAGCGAAGAAGATAGGTTTTTATCTCTACGATATTGATGATAGATCATCCGATTTATTTACCAAAAGAGGGGCAACGATCCAGTTGGCCAACAGTTCTCGAGGAATTCCGCAG] consensusID : consensus_1964#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 912 fasta sequence [AACGNNTCTTTCGATAGTCCCATTGTTANTTNNCCGGCCCTTTAATTTACCTTATNTTTTANCATAGTGTAGTTGCGGTGTCNGTATNTTAGGGTCGCTTGTANAGNCGTNNGGCGGGGCGTNCCCCAAAGTGGTGAGACCCTGNTCCTTGCTGTGTATCCCCGTTGCGTTCCCAGNGGTGNTNACGAGGNTGCCAAATTNGCCCNGTGTTGTTGANCCGTTANTCTTTAGTGTGTGGAAACCAAATGGTATAGGGGGTTTACCNANGAGTGGGCCCTGNTGTCCGGGTGTGGTAATAGTTCGCTGCCCAATTTGGTGTTTCNTGTTGGGCCACGTTTGCCAAGTTTGTATNTGGCGCCTACTGCCTATATTGTGTTNTANACTGCCTTTCTAACNGNTTCCTCGTTCNTTACTTGGGTATTCCTCTTTNTGTATATCAACTCNTTAGTATGTCCGTGGGCCTCCGGTATATTATCCAATATTNTAAGCCTCCCGTTTNTGTTTAAGTAATGNCCTAATATGTCATANCGGTTGATAAGAATTGTGCCCTCGGTTTTTGCTGTGGCGTTGNCTGGTNATGCAATGTTTCAGGGGCAGTTGTTGCTTGTGCGGGAATACTGGGATNTGTGGGTGCAGCAGTGTGGAGACGCAAGCACAACCTGCAAATGAATGCTGCAGTGCAGTGTGTGTNGCATGTGTTGAATGGTGCAAACAACAGATGTGTTGGGTTGAGCTGTGTGGAATTTGTTTGCTGTTTAGCAGGCCAATCTCAGCGCATTNGCATATGATGTCCTGCAGTCCCAGCATACAGCGTACAAGAAGAAGCTTCGGTGAATTGACAGATGCATTGTTCATAGGTTGGTAGCAGAGCGAAGAAGATAGTTTTATCTATAAACCGCGGGGGNATTCTTG] [-] EMBL AL694937 [AACGNNTCTTTCGATAGTCCCATTGTTANTTNNCCGGCCCTTTAATTTACCTTATNTTTTANCATAGTGTAGTTGCGGTGTCNGTATNTTAGGGTCGCTTGTANAGNCGTNNGGCGGGGCGTNCCCCAAAGTGGTGAGACCCTGNTCCTTGCTGTGTATCCCCGTTGCGTTCCCAGNGGTGNTNACGAGGNTGCCAAATTNGCCCNGTGTTGTTGANCCGTTANTCTTTAGTGTGTGGAAACCAAATGGTATAGGGGGTTTACCNANGAGTGGGCCCTGNTGTCCGGGTGTGGTAATAGTTCGCTGCCCAATTTGGTGTTTCNTGTTGGGCCACGTTTGCCAAGTTTGTATNTGGCGCCTACTGCCTATATTGTGTTNTANACTGCCTTTCTAACNGNTTCCTCGTTCNTTACTTGGGTATTCCTCTTTNTGTATATCAACTCNTTAGTATGTCCGTGGGCCTCCGGTATATTATCCAATATTNTAAGCCTCCCGTTTNTGTTTAAGTAATGNCCTAATATGTCATANCGGTTGATAAGAATTGTGCCCTCGGTTTTTGCTGTGGCGTTGNCTGGTNATGCAATGTTTCAGGGGCAGTTGTTGCTTGTGCGGGAATACTGGGATNTGTGGGTGCAGCAGTGTGGAGACGCAAGCACAACCTGCAAATGAATGCTGCAGTGCAGTGTGTGTNGCATGTGTTGAATGGTGCAAACAACAGATGTGTTGGGTTGAGCTGTGTGGAATTTGTTTGCTGTTTAGCAGGCCAATCTCAGCGCATTNGCATATGATGTCCTGCAGTCCCAGCATACAGCGTACAAGAAGAAGCTTCGGTGAATTGACAGATGCATTGTTCATAGGTTGGTAGCAGAGCGAAGAAGATAGTTTTATCTATAAACCGCGGGGGNATTCTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1964#0 GTTTCAAAAATTGTGAATGCCCCTTAATACAGTTCAAATCACAAAAAAAACTGATCTCGT 60 consensus_1964#1 ---------------AACGNNTCTTTCGATAGTCCCATTGTTANTTN--NCCGGCCC--T 41 ** * *** * *** * * * * * * * * consensus_1964#0 TCAATAAAAAAGCTGTTCTTAGAGAGAGGGGGTTGAAATCTTGCATTTT----TTGCATT 116 consensus_1964#1 TTAATTTACCTTATNTTTTANCATAGTGTAGTTGCGGTGTCNGTATNTTAGGGTCGC-TT 100 * *** * * ** * * ** * * * * ** ** * ** ** consensus_1964#0 ACGTAATTAAATGATTATGTCCTATCTAATTCATTTTTTTCTTAGGGCGTCCTTTGCATT 176 consensus_1964#1 GTANAGNCGTNNGGCGGGGCGTNCCCCAAAGTGGTGAGACCCTGNTCCTTGCTGTGTATC 160 * * * * ** * * * * * ** ** ** consensus_1964#0 TCCGTGAGAATGAGCTACGAGAAACGCTTTTTATTGTGCCGGATACAACGGCACTTTTTT 236 consensus_1964#1 CCCGT-----TGCGTTCCCAGNGGTGNTNACGAGGNTGCCAAAT----TNGCCCNGTGTT 211 **** ** * * * ** * * * **** ** ** * * ** consensus_1964#0 TCGCATTTCGTAGTTTTTTTTGAAAAAAATTCTCAAGGGATTCAAAATCTACTTTTTGGC 296 consensus_1964#1 GTTGANCCGTTANTCTTTAGTGTGTGGAAACCAAATGGTATAGGGGGTTTACCNANGAGT 271 * ** * *** ** ** * * ** ** * *** * consensus_1964#0 CATCTACATTCCCTACGT-CAGCAAAAAGCCTCAATACATTTACATATC----GTCGAAA 351 consensus_1964#1 GGGCCCTGNTGTCCGGGTGTGGTAATAGTTCGCTGCCCAATTTGGTGTTTCNTGTTGGGC 331 * * * ** * ** * * * ** ** * * ** * consensus_1964#0 GGCTATTTTCGGTCCAGTAACT--CCTCTACCGCTCCAGCTACATTCAAC--------CA 401 consensus_1964#1 CACGTTTGCCAAGTTTGTATNTGGCGCCTACTGCCTATATTGTGTTNTANACTGCCTTTC 391 * ** * *** * * **** ** * ** * consensus_1964#0 AAAACAATCTATTGAACATAA----GGTACAAAGCTTCGTGAA-GTCGCTCCATTGTTG- 455 consensus_1964#1 TAACNGNTTCCTCGTTCNTTACTTGGGTATTCCTCTTTNTGTATATCAACTCNTTAGTAT 451 ** * * * * * * **** *** ** * ** * ** * consensus_1964#0 --CTGTGGCCTTC----ATTTTGGCCTGCAATTTACGCTTCACGTCCTCA---AACTGAT 506 consensus_1964#1 GTCCGTGGGCCTCCGGTATATTATCCAATATTNTAAGCCTCCCGTTTNTGTTTAAGTAAT 511 * **** * ** ** ** ** * * ** ** ** *** ** * ** consensus_1964#0 CCTCTAAACCTAGATTCTGCTCGAAATCAATTAGCTCCT---TTTTAGATGCAA--TCAA 561 consensus_1964#1 GNCCTAATATGTCATANCGGTTGATAAGAATTGTGCCCTCGGTTTTTGCTGTGGCGTTGN 571 **** ** * * ** * **** *** **** * ** * consensus_1964#0 C--GTAATA-ATTTCCTCGTTTTCTTGCGTTGGCTGTATC---ATTTCGGGCGTTTCTTG 615 consensus_1964#1 CTGGTNATGCAATGTTTCAGGGGCAGTTGTTGCTTGTGCGGGAATACTGGGATNTGTGGG 631 * ** ** * * ** * **** *** ** *** * * consensus_1964#0 CGGAACTGGATTTTGGTTCGCGTTGAAGCAGCCACTCAAT-----AATCTCGTGCGTTTT 670 consensus_1964#1 TGCAGCAGTGTGGAGACGCAAGCACAACCTGCAAATGAATGCTGCAGTGCAGTGTGTGTN 691 * * * * * * * * ** * ** * * *** * * *** ** * consensus_1964#0 GCAT------AAAAATGTCAACAAC-GAT---TTTGGTTAGCATTTG---AATTTGTTTG 717 consensus_1964#1 GCATGTGTTGAATGGTGCAAACAACAGATGTGTTGGGTTGAGCTGTGTGGAATTTGTTTG 751 **** ** ** ****** *** ** **** * ** ********** consensus_1964#0 CTGTTTAGCAGGGCAATCTCAGCGCATTTGCA-ATGATGTTCTGCAGTCCC-GCA-ACAG 774 consensus_1964#1 CTGTTTAGCAGGCCAATCTCAGCGCATTNGCATATGATGTCCTGCAGTCCCAGCATACAG 811 ************ *************** *** ******* ********** *** **** consensus_1964#0 CGTACA-GAAGAAGCTTCGGTGAATTGAC-GATGCATTGTTCATAGGTTG-TAGCAGAGC 831 consensus_1964#1 CGTACAAGAAGAAGCTTCGGTGAATTGACAGATGCATTGTTCATAGGTTGGTAGCAGAGC 871 ****** ********************** ******************** ********* consensus_1964#0 GAAGAAGATAGGTTTTTATCTCTACGATATTGATGATAGATCATCCGATTTATTTACCAA 891 consensus_1964#1 GAAGAAGATAG--TTTTATCTATAAACCGCGGGGGNATTCTTG----------------- 912 *********** ******** ** * * * consensus_1964#0 AAGAGGGGCAACGATCCAGTTGGCCAACAGTTCTCGAGGAATTCCGCAG 940 consensus_1964#1 ------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||