These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1972#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence [AATNCCCCGAGTTAGACTCAGCTTCCGCCGCAACAACTGCAGTCGGCGAAGAGCGGCGACAGGGCAAGAACCTGTTCGACTTTATCGGGCTTGGAACCGGTGGCAATGTGGATCCCTATCTGGCACGCACGAACGCGCAGTGCTTGAACGGAGAGCTGGCCGAATGCTTCAAGTCCCAGGCCCTGCAGACGTTCGGCGAATTCTTCGACAAGGATCAGTACCAACTCACCAGCGATGCTAGGCTTGTTCGGCTACCAGAAACACAGCTCCGGTCACTGGCACAGGAAGGCTACGAGTTTGTGGGCGAATCGAGACACTCTGACTCCGAGTGGGAGCTGTTGTACAAGTACGCCCTTAGGCGACTGGAGCGTTTGTCAAGTCGACGGCGCTGGAATTCCAATCCCCGACGACATCACCGAGGAAGGACGGTACTCTGCGCGCTTCATCGACGAAATTTCTGACGAGATTGACGTAATAGAGGACAAGAAGGCGCCGCCTGTTTACTCGGCATCGGCTAAAGAAGATCTTCATTCCACTGCTGCTGATACTGAAGGTGTTCAAGCTGAAGCTGCTCCTGTTCCTGCTCTCGTGCTGGGGACTGCTAGCTTTAANAAGTTGCTCGGGCTTTCTNGGCCATCGTNGTGCCGGGTGTGATTGGGGTATCTTGAAGCTGTCAAACCAAA] [+] EMBL AL694980 [AATNCCCCGAGTTAGACTCAGCTTCCGCCGCAACAACTGCAGTCGGCGAAGAGCGGCGACAGGGCAAGAACCTGTTCGACTTTATCGGGCTTGGAACCGGTGGCAATGTGGATCCCTATCTGGCACGCACGAACGCGCAGTGCTTGAACGGAGAGCTGGCCGAATGCTTCAAGTCCCAGGCCCTGCAGACGTTCGGCGAATTCTTCGACAAGGATCAGTACCAACTCACCAGCGATGCTAGGCTTGTTCGGCTACCAGAAACACAGCTCCGGTCACTGGCACAGGAAGGCTACGAGTTTGTGGGCGAATCGAGACACTCTGACTCCGAGTGGGAGCTGTTGTACAAGTACGCCCTTAGGCGACTGGAGCGTTTGTCAAGTCGACGGCGCTGGAATTCCAATCCCCGACGACATCACCGAGGAAGGACGGTACTCTGCGCGCTTCATCGACGAAATTTCTGACGAGATTGACGTAATAGAGGACAAGAAGGCGCCGCCTGTTTACTCGGCATCGGCTAAAGAAGATCTTCATTCCACTGCTGCTGATACTGAAGGTGTTCAAGCTGAAGCTGCTCCTGTTCCTGCTCTCGTGCTGGGGACTGCTAGCTTTAANAAGTTGCTCGGGCTTTCTNGGCCATCGTNGTGCCGGGTGTGATTGGGGTATCTTGAAGCTGTCAAACCAAA] consensusID : consensus_1972#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 558 fasta sequence [GGAACATGGTCAGGGCCGGTCATCAGTGTGCTGGCAGTTCTACTGCTATCGTGCTGTGTGACTCCTGGCCTGCCAGAGGGCATCAAGCTACCTGATCAAACGTCTGGCGCGAGCAACGGTGGACCTCAGCTTCCGCCGCAACAACCTGCAGTCGGCGAAGAGCGGCGACAGGGCAAGAACCTGTTCGACTTTATCGGGCTTGGAACCGGTGGCAATGTGGATCCCTATCTGGCACGCACGAACGCGCAGTGCTTGAACGGAGAGCTGGCCGAATGCTTCAAGTCCCAGGCCCTGCAGACGTTCGGCGAATTCTTCGACAAGGATCAGTACCAACTCACCAGCGATGCTAGGCTTGTTCGGCTACCAGAAACACAGCTCCGGTCACTGGCACAGGAAGGCTACGAGTTTGTGGGCGAATCGAGACACTCTGACTCCGAGTGGGAGCTGTTGTACAAGTACGCCCTTAGGCGACTGGAGCGTTTTGTCAAGTCGACGGCGCTGGAATTCCACATCCCCGACGACATCACCGAGGAAGGACGGTACTCTGCGCGCTTCATC] [+] EMBL BM620512 [GGAACATGGTCAGGGCCGGTCATCAGTGTGCTGGCAGTTCTACTGCTATCGTGCTGTGTGACTCCTGGCCTGCCAGAGGGCATCAAGCTACCTGATCAAACGTCTGGCGCGAGCAACGGTGGACCTCAGCTTCCGCCGCAACAACCTGCAGTCGGCGAAGAGCGGCGACAGGGCAAGAACCTGTTCGACTTTATCGGGCTTGGAACCGGTGGCAATGTGGATCCCTATCTGGCACGCACGAACGCGCAGTGCTTGAACGGAGAGCTGGCCGAATGCTTCAAGTCCCAGGCCCTGCAGACGTTCGGCGAATTCTTCGACAAGGATCAGTACCAACTCACCAGCGATGCTAGGCTTGTTCGGCTACCAGAAACACAGCTCCGGTCACTGGCACAGGAAGGCTACGAGTTTGTGGGCGAATCGAGACACTCTGACTCCGAGTGGGAGCTGTTGTACAAGTACGCCCTTAGGCGACTGGAGCGTTTTGTCAAGTCGACGGCGCTGGAATTCCACATCCCCGACGACATCACCGAGGAAGGACGGTACTCTGCGCGCTTCATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1972#0 ------------------------------------------------------------ consensus_1972#1 GGAACATGGTCAGGGCCGGTCATCAGTGTGCTGGCAGTTCTACTGCTATCGTGCTGTGTG 60 consensus_1972#0 -----------------------------------------------AATNCCCCGAGTT 13 consensus_1972#1 ACTCCTGGCCTGCCAGAGGGCATCAAGCTACCTGATCAAACGTCTGGCGCGAGCAACGGT 120 * * * consensus_1972#0 AGAC-TCAGCTTCCGCCGCAACAAC-TGCAGTCGGCGAAGAGCGGCGACAGGGCAAGAAC 71 consensus_1972#1 GGACCTCAGCTTCCGCCGCAACAACCTGCAGTCGGCGAAGAGCGGCGACAGGGCAAGAAC 180 *** ******************** ********************************** consensus_1972#0 CTGTTCGACTTTATCGGGCTTGGAACCGGTGGCAATGTGGATCCCTATCTGGCACGCACG 131 consensus_1972#1 CTGTTCGACTTTATCGGGCTTGGAACCGGTGGCAATGTGGATCCCTATCTGGCACGCACG 240 ************************************************************ consensus_1972#0 AACGCGCAGTGCTTGAACGGAGAGCTGGCCGAATGCTTCAAGTCCCAGGCCCTGCAGACG 191 consensus_1972#1 AACGCGCAGTGCTTGAACGGAGAGCTGGCCGAATGCTTCAAGTCCCAGGCCCTGCAGACG 300 ************************************************************ consensus_1972#0 TTCGGCGAATTCTTCGACAAGGATCAGTACCAACTCACCAGCGATGCTAGGCTTGTTCGG 251 consensus_1972#1 TTCGGCGAATTCTTCGACAAGGATCAGTACCAACTCACCAGCGATGCTAGGCTTGTTCGG 360 ************************************************************ consensus_1972#0 CTACCAGAAACACAGCTCCGGTCACTGGCACAGGAAGGCTACGAGTTTGTGGGCGAATCG 311 consensus_1972#1 CTACCAGAAACACAGCTCCGGTCACTGGCACAGGAAGGCTACGAGTTTGTGGGCGAATCG 420 ************************************************************ consensus_1972#0 AGACACTCTGACTCCGAGTGGGAGCTGTTGTACAAGTACGCCCTTAGGCGACTGGAGCGT 371 consensus_1972#1 AGACACTCTGACTCCGAGTGGGAGCTGTTGTACAAGTACGCCCTTAGGCGACTGGAGCGT 480 ************************************************************ consensus_1972#0 TT-GTCAAGTCGACGGCGCTGGAATTCCA-ATCCCCGACGACATCACCGAGGAAGGACGG 429 consensus_1972#1 TTTGTCAAGTCGACGGCGCTGGAATTCCACATCCCCGACGACATCACCGAGGAAGGACGG 540 ** ************************** ****************************** consensus_1972#0 TACTCTGCGCGCTTCATCGACGAAATTTCTGACGAGATTGACGTAATAGAGGACAAGAAG 489 consensus_1972#1 TACTCTGCGCGCTTCATC------------------------------------------ 558 ****************** consensus_1972#0 GCGCCGCCTGTTTACTCGGCATCGGCTAAAGAAGATCTTCATTCCACTGCTGCTGATACT 549 consensus_1972#1 ------------------------------------------------------------ consensus_1972#0 GAAGGTGTTCAAGCTGAAGCTGCTCCTGTTCCTGCTCTCGTGCTGGGGACTGCTAGCTTT 609 consensus_1972#1 ------------------------------------------------------------ consensus_1972#0 AANAAGTTGCTCGGGCTTTCTNGGCCATCGTNGTGCCGGGTGTGATTGGGGTATCTTGAA 669 consensus_1972#1 ------------------------------------------------------------ consensus_1972#0 GCTGTCAAACCAAA 683 consensus_1972#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||