These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1973#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence [CCGGGATACGTTCGTTCGGTTTGTGTTGCGTTCGGTTTTGAAAAAAAAAAAACAAGTTTCGTTAGTTCGTTCGTTCTCTACGTGGTGCATCACCCTCGCAATTGGAGTGGCAAAAAAAAACAGACCAAAGTAATCAATTTCATTCCCTCCGCTTCACACAAGCGACCAGTAGCAGTAGCAGCAGCGGCGGCGAACACCACCATGAATCAAATCATCGTGCTGAGCGAGGGCTACTCGAAGTACGAGCAGAACGAACCGCCGTCGGCCGACGCCCCGATGCTGGCCAACTGCACCTGCACCCTGATCAAAGGCCCCGATTGCAACGTCATCGTCGACACGATGACACCTTGGGATGGCGATCTGCTTTTACAGCGACTGCAGGAGCATCAGCTGCATCCGGACGACATCGACTACGTCGTGAGCACACATGGACATTCCGACCATCTGGGGAATAATAACCTCTTCCTGCGGGCGAAGCGGCACATCGTTGGCACTAATATTTCCCACCGGAATCGTTACTACGTCCATGATTTCGACGCCGGCCCCTTCCGACTGACGGATGACATCGAAGTGCAGGCCACACCGGGACCACGCTGTCCTGCGTGACGGTGCTGGTAGCAAAGAG] [+] EMBL BM602755 [CCGGGATACGTTCGTTCGGTTTGTGTTGCGTTCGGTTTTGAAAAAAAAAAAACAAGTTTCGTTAGTTCGTTCGTTCTCTACGTGGTGCATCACCCTCGCAATTGGAGTGGCAAAAAAAAACAGACCAAAGTAATCAATTTCATTCCCTCCGCTTCACACAAGCGACCAGTAGCAGTAGCAGCAGCGGCGGCGAACACCACCATGAATCAAATCATCGTGCTGAGCGAGGGCTACTCGAAGTACGAGCAGAACGAACCGCCGTCGGCCGACGCCCCGATGCTGGCCAACTGCACCTGCACCCTGATCAAAGGCCCCGATTGCAACGTCATCGTCGACACGATGACACCTTGGGATGGCGATCTGCTTTTACAGCGACTGCAGGAGCATCAGCTGCATCCGGACGACATCGACTACGTCGTGAGCACACATGGACATTCCGACCATCTGGGGAATAATAACCTCTTCCTGCGGGCGAAGCGGCACATCGTTGGCACTAATATTTCCCACCGGAATCGTTACTACGTCCATGATTTCGACGCCGGCCCCTTCCGACTGACGGATGACATCGAAGTGCAGGCCACACCGGGACCACGCTGTCCTGCGTGACGGTGCTGGTAGCAAAGAG] consensusID : consensus_1973#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 556 fasta sequence [GGCCAGATTCGGCACGTAGGCCCGTCTTCAAATCATCCTAGTAGCGCATGCTGCACGCTGCCCAACAAGTGTGTGAAGTGAAAAGGTCGCTCTCCTTGTGCCGGAATTCCATTTCCCACATATCTGAGATTTTTTTTAGCGTTCCACAAGCCATAGTGCAGCATCGTCAGAAAAAACATCGTCCACTCATCCTCATCGAAAGCATATACACCGCTCCAACGTAGCAGCAGCAGCAGTGGCGAACACCACCATGAATCAAATCATCGTGCTGAGCGAGGGCTACTCGAAGTACGAGCAGAACGAACCGCCGTCGGCCGACGCCCCGATGCTGGCCAACTGCACCTGCACCCTGATCAAAGGCCCCGATTGCAACGTCATCGTCGACACGATGACACCTTGGGATGGCGATCTGCTTTTACAGCGACTGCAGGGGCATCAGCTGCATCCGGACGACATCGACTACGTCGTGAGCACACATGGACATTCCGACCATCTGGGGAATAATAACCTCTTCCTGCGGGCGAAGCGGCACATCGTTGGCACTAATATTTCCCAC] [+] EMBL BX468532 [GGCCAGATTCGGCACGTAGGCCCGTCTTCAAATCATCCTAGTAGCGCATGCTGCACGCTGCCCAACAAGTGTGTGAAGTGAAAAGGTCGCTCTCCTTGTGCCGGAATTCCATTTCCCACATATCTGAGATTTTTTTTAGCGTTCCACAAGCCATAGTGCAGCATCGTCAGAAAAAACATCGTCCACTCATCCTCATCGAAAGCATATACACCGCTCCAACGTAGCAGCAGCAGCAGTGGCGAACACCACCATGAATCAAATCATCGTGCTGAGCGAGGGCTACTCGAAGTACGAGCAGAACGAACCGCCGTCGGCCGACGCCCCGATGCTGGCCAACTGCACCTGCACCCTGATCAAAGGCCCCGATTGCAACGTCATCGTCGACACGATGACACCTTGGGATGGCGATCTGCTTTTACAGCGACTGCAGGGGCATCAGCTGCATCCGGACGACATCGACTACGTCGTGAGCACACATGGACATTCCGACCATCTGGGGAATAATAACCTCTTCCTGCGGGCGAAGCGGCACATCGTTGGCACTAATATTTCCCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1973#0 --------------------------------CCGGGATACGTTCGTTCGGTTTGTGTTG 28 consensus_1973#1 GGCCAGATTCGGCACGTAGGCCCGTCTTCAAATCATCCTAGTAGCGCATGCTGCACGCTG 60 * ** ** * * * ** consensus_1973#0 CGT--TCGGTTTTGAAAAAAAAAAAACAAGTTTCGTTAGTTCG----TTCGTTCTCTACG 82 consensus_1973#1 CCCAACAAGTGTGTGAAGTGAAAAGGTCGCTCTCCTTGTGCCGGAATTCCATTTCCCACA 120 * ** * ** **** * ** ** ** * * ** * ** consensus_1973#0 TG---GTGCATCACCCTCGCAATTGGAGTGGCAAAAAAAAACAG-ACCAAAGTAATCAAT 138 consensus_1973#1 TATCTGAGATTTTTTTTAGCGTTCCACAAGCCATAGTGCAGCATCGTCAGAAAAAACATC 180 * * * * * ** * * ** * * ** ** * ** ** consensus_1973#0 TTCATTCCCTCCGCTTCA----CACA---AGCGACCAGTAGCAGTAGCAGCAGCGGCGGC 191 consensus_1973#1 GTCCACTCATCCTCATCGAAAGCATATACACCGCTCCAACGTAGCAGCAGCAGCAGTGGC 240 ** * *** * ** ** * * ** * * ** ********* * *** consensus_1973#0 GAACACCACCATGAATCAAATCATCGTGCTGAGCGAGGGCTACTCGAAGTACGAGCAGAA 251 consensus_1973#1 GAACACCACCATGAATCAAATCATCGTGCTGAGCGAGGGCTACTCGAAGTACGAGCAGAA 300 ************************************************************ consensus_1973#0 CGAACCGCCGTCGGCCGACGCCCCGATGCTGGCCAACTGCACCTGCACCCTGATCAAAGG 311 consensus_1973#1 CGAACCGCCGTCGGCCGACGCCCCGATGCTGGCCAACTGCACCTGCACCCTGATCAAAGG 360 ************************************************************ consensus_1973#0 CCCCGATTGCAACGTCATCGTCGACACGATGACACCTTGGGATGGCGATCTGCTTTTACA 371 consensus_1973#1 CCCCGATTGCAACGTCATCGTCGACACGATGACACCTTGGGATGGCGATCTGCTTTTACA 420 ************************************************************ consensus_1973#0 GCGACTGCAGGAGCATCAGCTGCATCCGGACGACATCGACTACGTCGTGAGCACACATGG 431 consensus_1973#1 GCGACTGCAGGGGCATCAGCTGCATCCGGACGACATCGACTACGTCGTGAGCACACATGG 480 *********** ************************************************ consensus_1973#0 ACATTCCGACCATCTGGGGAATAATAACCTCTTCCTGCGGGCGAAGCGGCACATCGTTGG 491 consensus_1973#1 ACATTCCGACCATCTGGGGAATAATAACCTCTTCCTGCGGGCGAAGCGGCACATCGTTGG 540 ************************************************************ consensus_1973#0 CACTAATATTTCCCACCGGAATCGTTACTACGTCCATGATTTCGACGCCGGCCCCTTCCG 551 consensus_1973#1 CACTAATATTTCCCAC-------------------------------------------- 556 **************** consensus_1973#0 ACTGACGGATGACATCGAAGTGCAGGCCACACCGGGACCACGCTGTCCTGCGTGACGGTG 611 consensus_1973#1 ------------------------------------------------------------ consensus_1973#0 CTGGTAGCAAAGAG 625 consensus_1973#1 -------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||