cluster # 1978

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Anopheles gambiae
cluster # 1978 cluster # 1978 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1978#0 length = 673 sequences # 1

consensus_1978#1 length = 602 sequences # 1

consensusID : consensus_1978#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 673
fasta sequence

                              [CGACCCACGCGTCCGCGGACGCGTGGGGACGATTTCGATTTGCCAGGAACCCTACTCCGCCTTCGTTTCGGTTTTTAATTTAGTTTCGCGAGCGTTTTTCACTTAAAAAATGCTGCCCCCGGCATAGCAATGGCCATCGCACGAAAAGAGTGAAACCAAACAAAAACAGATCAAATCCCCAGATCCGCAGAGGAGGCAGAAAAACCCTGCACATGCCCCCTGTACAAGCAGTGCGCGCGTGTGTGTTACGTCAAACGGTTGGTGCCGCGGGCGAAGGAAGATGAATGTGTTGTCGGTGGTGGAACGAAGAAGAACGCATCGGGTGTTTATTTTCCGTTCCCTGCCGTGCGGCGTGACTGTCGCTGCCCGTGACTCCGTGTGTGGTGTGGTAGAACATTTGCCTCAGCAGTTCGGTCGCATCCGTAGCACCTTTCCGTCGGTGCGCCGAAAGCAGCGTGCCCTGCTGTTGTCCGACCAGCACAAAAGAGCGCGCAATTGAACGAACGAGCGAAATCGAAAACCCCAGCAGCAGCAGCGGCCCGCGTCTGTGTGTTTGTGTGTATTTTTGTGTGTGTGTGCGCGCGCGTTCGTGCTTAACGAAACCTTTGCACTGCCCCGCAGAAGTGTCAGAGCGGTGCGCCGCCGTGGTCGCTTGACGAAAACGTCAAACCCA]

[+] EMBL BM582629             [CGACCCACGCGTCCGCGGACGCGTGGGGACGATTTCGATTTGCCAGGAACCCTACTCCGCCTTCGTTTCGGTTTTTAATTTAGTTTCGCGAGCGTTTTTCACTTAAAAAATGCTGCCCCCGGCATAGCAATGGCCATCGCACGAAAAGAGTGAAACCAAACAAAAACAGATCAAATCCCCAGATCCGCAGAGGAGGCAGAAAAACCCTGCACATGCCCCCTGTACAAGCAGTGCGCGCGTGTGTGTTACGTCAAACGGTTGGTGCCGCGGGCGAAGGAAGATGAATGTGTTGTCGGTGGTGGAACGAAGAAGAACGCATCGGGTGTTTATTTTCCGTTCCCTGCCGTGCGGCGTGACTGTCGCTGCCCGTGACTCCGTGTGTGGTGTGGTAGAACATTTGCCTCAGCAGTTCGGTCGCATCCGTAGCACCTTTCCGTCGGTGCGCCGAAAGCAGCGTGCCCTGCTGTTGTCCGACCAGCACAAAAGAGCGCGCAATTGAACGAACGAGCGAAATCGAAAACCCCAGCAGCAGCAGCGGCCCGCGTCTGTGTGTTTGTGTGTATTTTTGTGTGTGTGTGCGCGCGCGTTCGTGCTTAACGAAACCTTTGCACTGCCCCGCAGAAGTGTCAGAGCGGTGCGCCGCCGTGGTCGCTTGACGAAAACGTCAAACCCA]




>consensus_1978#0
CGACCCACGCGTCCGCGGACGCGTGGGGACGATTTCGATTTGCCAGGAACCCTACTCCGC
CTTCGTTTCGGTTTTTAATTTAGTTTCGCGAGCGTTTTTCACTTAAAAAATGCTGCCCCC
GGCATAGCAATGGCCATCGCACGAAAAGAGTGAAACCAAACAAAAACAGATCAAATCCCC
AGATCCGCAGAGGAGGCAGAAAAACCCTGCACATGCCCCCTGTACAAGCAGTGCGCGCGT
GTGTGTTACGTCAAACGGTTGGTGCCGCGGGCGAAGGAAGATGAATGTGTTGTCGGTGGT
GGAACGAAGAAGAACGCATCGGGTGTTTATTTTCCGTTCCCTGCCGTGCGGCGTGACTGT
CGCTGCCCGTGACTCCGTGTGTGGTGTGGTAGAACATTTGCCTCAGCAGTTCGGTCGCAT
CCGTAGCACCTTTCCGTCGGTGCGCCGAAAGCAGCGTGCCCTGCTGTTGTCCGACCAGCA
CAAAAGAGCGCGCAATTGAACGAACGAGCGAAATCGAAAACCCCAGCAGCAGCAGCGGCC
CGCGTCTGTGTGTTTGTGTGTATTTTTGTGTGTGTGTGCGCGCGCGTTCGTGCTTAACGA
AACCTTTGCACTGCCCCGCAGAAGTGTCAGAGCGGTGCGCCGCCGTGGTCGCTTGACGAA
AACGTCAAACCCA

consensusID : consensus_1978#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 602
fasta sequence

                              [CCGCCGGCCCAGTCTGCCACGGACGGTGGTGGTCCATGAAAAAACGCCTAATCGTGTGTGCGTGTGTGACGATTTCGATTTGCCAGGAACCCTACTCCGCCTTCGTTTCGGTTTTTAATTTAGTTTCGCGAGCGTTTTTCACTTAAAAAATGCTGCCCCCGGCATAGCAATGGCCATCGCACGAAAAGAGTGAAACCAAACAAAAACAGATCAAATCCCCAGATCCGCAGAGGAGGCAGAAAAACCCTGCACATGCCCCCTGTACAAGCAGTGCGCGCGTGTGTGTTACGTCAAACGGTTGGTGCCGCGGGCGAAGGAAGATGAATGTGTTGTCGGTGGTGGAACGAAGAAGAACGCATCGGGTGTTTATTTTCCGTTCCCTGCCGTGCGGCGTGACTGTCGCTGCCCGTGACTCCGTGTGTGGTGTGGTAGAACATTTGCCTCAGCAGTTCGGTCGCATCCGTAGCACCTTTCCGCCGGTGCGCCGAAAGCAGCGTGCCCTGCTGTTGTCCGACCAGCACAAAAGAGCGCGCAATTGAACGAACGAGCGAAATCGAAAACCCCAGCAGCAGCAGCGGCCCGCGTCTGGGTGTTTGTGTGTA]

[+] EMBL BM587525             [CCGCCGGCCCAGTCTGCCACGGACGGTGGTGGTCCATGAAAAAACGCCTAATCGTGTGTGCGTGTGTGACGATTTCGATTTGCCAGGAACCCTACTCCGCCTTCGTTTCGGTTTTTAATTTAGTTTCGCGAGCGTTTTTCACTTAAAAAATGCTGCCCCCGGCATAGCAATGGCCATCGCACGAAAAGAGTGAAACCAAACAAAAACAGATCAAATCCCCAGATCCGCAGAGGAGGCAGAAAAACCCTGCACATGCCCCCTGTACAAGCAGTGCGCGCGTGTGTGTTACGTCAAACGGTTGGTGCCGCGGGCGAAGGAAGATGAATGTGTTGTCGGTGGTGGAACGAAGAAGAACGCATCGGGTGTTTATTTTCCGTTCCCTGCCGTGCGGCGTGACTGTCGCTGCCCGTGACTCCGTGTGTGGTGTGGTAGAACATTTGCCTCAGCAGTTCGGTCGCATCCGTAGCACCTTTCCGCCGGTGCGCCGAAAGCAGCGTGCCCTGCTGTTGTCCGACCAGCACAAAAGAGCGCGCAATTGAACGAACGAGCGAAATCGAAAACCCCAGCAGCAGCAGCGGCCCGCGTCTGGGTGTTTGTGTGTA]




>consensus_1978#1
CCGCCGGCCCAGTCTGCCACGGACGGTGGTGGTCCATGAAAAAACGCCTAATCGTGTGTG
CGTGTGTGACGATTTCGATTTGCCAGGAACCCTACTCCGCCTTCGTTTCGGTTTTTAATT
TAGTTTCGCGAGCGTTTTTCACTTAAAAAATGCTGCCCCCGGCATAGCAATGGCCATCGC
ACGAAAAGAGTGAAACCAAACAAAAACAGATCAAATCCCCAGATCCGCAGAGGAGGCAGA
AAAACCCTGCACATGCCCCCTGTACAAGCAGTGCGCGCGTGTGTGTTACGTCAAACGGTT
GGTGCCGCGGGCGAAGGAAGATGAATGTGTTGTCGGTGGTGGAACGAAGAAGAACGCATC
GGGTGTTTATTTTCCGTTCCCTGCCGTGCGGCGTGACTGTCGCTGCCCGTGACTCCGTGT
GTGGTGTGGTAGAACATTTGCCTCAGCAGTTCGGTCGCATCCGTAGCACCTTTCCGCCGG
TGCGCCGAAAGCAGCGTGCCCTGCTGTTGTCCGACCAGCACAAAAGAGCGCGCAATTGAA
CGAACGAGCGAAATCGAAAACCCCAGCAGCAGCAGCGGCCCGCGTCTGGGTGTTTGTGTG
TA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1978#0      ---------------------------------------CGACCCACGCGTCCGCGGACG 21
consensus_1978#1      CCGCCGGCCCAGTCTGCCACGGACGGTGGTGGTCCATGAAAAAACGCCTAATCGTGTGTG 60
                                                               *  * *     ** *   *

consensus_1978#0      CGTGGG-GACGATTTCGATTTGCCAGGAACCCTACTCCGCCTTCGTTTCGGTTTTTAATT 80
consensus_1978#1      CGTGTGTGACGATTTCGATTTGCCAGGAACCCTACTCCGCCTTCGTTTCGGTTTTTAATT 120
                      **** * *****************************************************

consensus_1978#0      TAGTTTCGCGAGCGTTTTTCACTTAAAAAATGCTGCCCCCGGCATAGCAATGGCCATCGC 140
consensus_1978#1      TAGTTTCGCGAGCGTTTTTCACTTAAAAAATGCTGCCCCCGGCATAGCAATGGCCATCGC 180
                      ************************************************************

consensus_1978#0      ACGAAAAGAGTGAAACCAAACAAAAACAGATCAAATCCCCAGATCCGCAGAGGAGGCAGA 200
consensus_1978#1      ACGAAAAGAGTGAAACCAAACAAAAACAGATCAAATCCCCAGATCCGCAGAGGAGGCAGA 240
                      ************************************************************

consensus_1978#0      AAAACCCTGCACATGCCCCCTGTACAAGCAGTGCGCGCGTGTGTGTTACGTCAAACGGTT 260
consensus_1978#1      AAAACCCTGCACATGCCCCCTGTACAAGCAGTGCGCGCGTGTGTGTTACGTCAAACGGTT 300
                      ************************************************************

consensus_1978#0      GGTGCCGCGGGCGAAGGAAGATGAATGTGTTGTCGGTGGTGGAACGAAGAAGAACGCATC 320
consensus_1978#1      GGTGCCGCGGGCGAAGGAAGATGAATGTGTTGTCGGTGGTGGAACGAAGAAGAACGCATC 360
                      ************************************************************

consensus_1978#0      GGGTGTTTATTTTCCGTTCCCTGCCGTGCGGCGTGACTGTCGCTGCCCGTGACTCCGTGT 380
consensus_1978#1      GGGTGTTTATTTTCCGTTCCCTGCCGTGCGGCGTGACTGTCGCTGCCCGTGACTCCGTGT 420
                      ************************************************************

consensus_1978#0      GTGGTGTGGTAGAACATTTGCCTCAGCAGTTCGGTCGCATCCGTAGCACCTTTCCGTCGG 440
consensus_1978#1      GTGGTGTGGTAGAACATTTGCCTCAGCAGTTCGGTCGCATCCGTAGCACCTTTCCGCCGG 480
                      ******************************************************** ***

consensus_1978#0      TGCGCCGAAAGCAGCGTGCCCTGCTGTTGTCCGACCAGCACAAAAGAGCGCGCAATTGAA 500
consensus_1978#1      TGCGCCGAAAGCAGCGTGCCCTGCTGTTGTCCGACCAGCACAAAAGAGCGCGCAATTGAA 540
                      ************************************************************

consensus_1978#0      CGAACGAGCGAAATCGAAAACCCCAGCAGCAGCAGCGGCCCGCGTCTGTGTGTTTGTGTG 560
consensus_1978#1      CGAACGAGCGAAATCGAAAACCCCAGCAGCAGCAGCGGCCCGCGTCTGGGTGTTTGTGTG 600
                      ************************************************ ***********

consensus_1978#0      TATTTTTGTGTGTGTGTGCGCGCGCGTTCGTGCTTAACGAAACCTTTGCACTGCCCCGCA 620
consensus_1978#1      TA---------------------------------------------------------- 602
                      **                                                          

consensus_1978#0      GAAGTGTCAGAGCGGTGCGCCGCCGTGGTCGCTTGACGAAAACGTCAAACCCA 673
consensus_1978#1      -----------------------------------------------------