cluster # 1979

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Anopheles gambiae
cluster # 1979 cluster # 1979 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1979#0 length = 906 sequences # 1

consensus_1979#1 length = 807 sequences # 1

consensusID : consensus_1979#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 906
fasta sequence

                              [CAGAATCGGCACGAGGCACGCCGAGGTAGAGTGTCAGCGGCTGCAGAGTGACTGTCCCAGACCGCTCGACCCGCACAAGTACCGCTCGTTCCTGCAGACGCGCCCCGACACGATGGAACAGCGGGCGATCGAGCTGGTCGCGAAGGTGGCCCAGCGGCACGACGTTCGGGCACACATCGTGCACCTGTCCACGGCCCGCGCCCTGCCAACGATCAGAGCGGCCCGGGCGCTCGGCGCTCGCCTGACGGTGGAAACCTGCCACCACTATCTGTCGCTGGCCGCCGAGGACGTGCCGGACGCTCGCACCGAGTACAAGTGCTGTCCGCCGATACGCGGCCGCACCAACCGGGAGCAGCTGTGGCGCGCCGTGCAGGCCCGGGACATTGATCTGATCGTGTCGGACCATTCGCCCAGCACGCCCCAGCTGAAGCTGCTCACCGACGGCAAGCGGCAGGGTAACTTCCTCGAGGCGTGGGGTGGCATTTCCTCGCTGCAGCTCGGGCTGCCCCTGTTCTGGACCGGCTGCCGGCGGTACGGGCTGTCGCTGCAGGAGACGGTCCGCCTGCTCTGCACCGAGCCGGCCCGGCTGAGCGGGCTGGACCATCGCAAGAGCCGGCTGGACGTTGGCCTACGACGGGGACATGTGTGTCTGGGATCCGGAGGGTACGGTCAACCGTCACGGGAGGGACATTGCTCGAAGTTCAGCACAAAGCGANGCCNTACTTAAACGAAAGCTTNCAGGGGCCGTTCNGTGCATGCACCGGATACTTGGGCGGGTCACTTGATCTAATCAAAGGCACCGGACCGTTGCCANCTTTTTNGGGGCCACCTTTTGGGGNACGGAATACATGGTCCGAAANGGTCCCTAAAGGGCCGAGTATTCNACACACGACAAGGAGTTTTANC]

[+] EMBL BX467758             [CAGAATCGGCACGAGGCACGCCGAGGTAGAGTGTCAGCGGCTGCAGAGTGACTGTCCCAGACCGCTCGACCCGCACAAGTACCGCTCGTTCCTGCAGACGCGCCCCGACACGATGGAACAGCGGGCGATCGAGCTGGTCGCGAAGGTGGCCCAGCGGCACGACGTTCGGGCACACATCGTGCACCTGTCCACGGCCCGCGCCCTGCCAACGATCAGAGCGGCCCGGGCGCTCGGCGCTCGCCTGACGGTGGAAACCTGCCACCACTATCTGTCGCTGGCCGCCGAGGACGTGCCGGACGCTCGCACCGAGTACAAGTGCTGTCCGCCGATACGCGGCCGCACCAACCGGGAGCAGCTGTGGCGCGCCGTGCAGGCCCGGGACATTGATCTGATCGTGTCGGACCATTCGCCCAGCACGCCCCAGCTGAAGCTGCTCACCGACGGCAAGCGGCAGGGTAACTTCCTCGAGGCGTGGGGTGGCATTTCCTCGCTGCAGCTCGGGCTGCCCCTGTTCTGGACCGGCTGCCGGCGGTACGGGCTGTCGCTGCAGGAGACGGTCCGCCTGCTCTGCACCGAGCCGGCCCGGCTGAGCGGGCTGGACCATCGCAAGAGCCGGCTGGACGTTGGCCTACGACGGGGACATGTGTGTCTGGGATCCGGAGGGTACGGTCAACCGTCACGGGAGGGACATTGCTCGAAGTTCAGCACAAAGCGANGCCNTACTTAAACGAAAGCTTNCAGGGGCCGTTCNGTGCATGCACCGGATACTTGGGCGGGTCACTTGATCTAATCAAAGGCACCGGACCGTTGCCANCTTTTTNGGGGCCACCTTTTGGGGNACGGAATACATGGTCCGAAANGGTCCCTAAAGGGCCGAGTATTCNACACACGACAAGGAGTTTTANC]




>consensus_1979#0
CAGAATCGGCACGAGGCACGCCGAGGTAGAGTGTCAGCGGCTGCAGAGTGACTGTCCCAG
ACCGCTCGACCCGCACAAGTACCGCTCGTTCCTGCAGACGCGCCCCGACACGATGGAACA
GCGGGCGATCGAGCTGGTCGCGAAGGTGGCCCAGCGGCACGACGTTCGGGCACACATCGT
GCACCTGTCCACGGCCCGCGCCCTGCCAACGATCAGAGCGGCCCGGGCGCTCGGCGCTCG
CCTGACGGTGGAAACCTGCCACCACTATCTGTCGCTGGCCGCCGAGGACGTGCCGGACGC
TCGCACCGAGTACAAGTGCTGTCCGCCGATACGCGGCCGCACCAACCGGGAGCAGCTGTG
GCGCGCCGTGCAGGCCCGGGACATTGATCTGATCGTGTCGGACCATTCGCCCAGCACGCC
CCAGCTGAAGCTGCTCACCGACGGCAAGCGGCAGGGTAACTTCCTCGAGGCGTGGGGTGG
CATTTCCTCGCTGCAGCTCGGGCTGCCCCTGTTCTGGACCGGCTGCCGGCGGTACGGGCT
GTCGCTGCAGGAGACGGTCCGCCTGCTCTGCACCGAGCCGGCCCGGCTGAGCGGGCTGGA
CCATCGCAAGAGCCGGCTGGACGTTGGCCTACGACGGGGACATGTGTGTCTGGGATCCGG
AGGGTACGGTCAACCGTCACGGGAGGGACATTGCTCGAAGTTCAGCACAAAGCGANGCCN
TACTTAAACGAAAGCTTNCAGGGGCCGTTCNGTGCATGCACCGGATACTTGGGCGGGTCA
CTTGATCTAATCAAAGGCACCGGACCGTTGCCANCTTTTTNGGGGCCACCTTTTGGGGNA
CGGAATACATGGTCCGAAANGGTCCCTAAAGGGCCGAGTATTCNACACACGACAAGGAGT
TTTANC

consensusID : consensus_1979#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 807
fasta sequence

                              [GAGGTAGGTGAGAGTGACTGTCCAGACGCTCGACCGCACAAGTACCGCTCGTTCCTGCAGACGCGCCCCGACACGATGGAACAGCGGGCGATCGAGCTGGTCGCGAAGGTGGCCCAGCGGCACGACGTTCGGGCACACATGTGCACCTGTCCACGGCCCGCGCCCTGTCAACGATCAGAGCGGNCCGGGGCGCTCGGTGGACTCTGTCCTGAGGGCTGGANAATCTTGACAATCAAGTATTCTTGTNGGTGGGTCCGCGCGTAGGGNATGGTTGCGCTGGAACAGCTTCGCACCCAGANNATACGAACNGTTTGTTTGTCCCGCACCGAATTATNGGCTGGACCGNTACGCCAAACCCGGGGTAAGGCCAATGTTTGTTTGTGGGGGCCGGACCCAGTTGNCAGGGCCCCCGCGGAATCAATTTGGACTTCCTTGAATTCGGTTGTTCGGGAGCCCATTTCCGCCCCCAAGNCTATCNGCTCCCCCCATCCGTTGATANGGCCTTTGCCTTCAACCCCGGNACCCNGGGGCCANAACGCCCNGGGCCACATGTGGGGTTAACACATCGTTTTCCCCTTCCCGAACGCGGGCCGGCTTGGCGGNGGTTTGGGGNATTTATTCCTCTTCCCTGCCGTTTGGCNAGGCGTTCCTGGGTGGTTGGTCCTCCTTNCTTTCCTTTTGGTGAGCCCTACGGGGCTTTGNTCCTGGCGCCGTGGGTTACCTGTNGGGNCTTAGGTTCCCGTCGTTACGCGAGCGGTGAATGAACAGGGGTCCCCGGCCGTTGCTTCCTTGGCAAACCCGGGATCG]

[+] EMBL AL695020             [GAGGTAGGTGAGAGTGACTGTCCAGACGCTCGACCGCACAAGTACCGCTCGTTCCTGCAGACGCGCCCCGACACGATGGAACAGCGGGCGATCGAGCTGGTCGCGAAGGTGGCCCAGCGGCACGACGTTCGGGCACACATGTGCACCTGTCCACGGCCCGCGCCCTGTCAACGATCAGAGCGGNCCGGGGCGCTCGGTGGACTCTGTCCTGAGGGCTGGANAATCTTGACAATCAAGTATTCTTGTNGGTGGGTCCGCGCGTAGGGNATGGTTGCGCTGGAACAGCTTCGCACCCAGANNATACGAACNGTTTGTTTGTCCCGCACCGAATTATNGGCTGGACCGNTACGCCAAACCCGGGGTAAGGCCAATGTTTGTTTGTGGGGGCCGGACCCAGTTGNCAGGGCCCCCGCGGAATCAATTTGGACTTCCTTGAATTCGGTTGTTCGGGAGCCCATTTCCGCCCCCAAGNCTATCNGCTCCCCCCATCCGTTGATANGGCCTTTGCCTTCAACCCCGGNACCCNGGGGCCANAACGCCCNGGGCCACATGTGGGGTTAACACATCGTTTTCCCCTTCCCGAACGCGGGCCGGCTTGGCGGNGGTTTGGGGNATTTATTCCTCTTCCCTGCCGTTTGGCNAGGCGTTCCTGGGTGGTTGGTCCTCCTTNCTTTCCTTTTGGTGAGCCCTACGGGGCTTTGNTCCTGGCGCCGTGGGTTACCTGTNGGGNCTTAGGTTCCCGTCGTTACGCGAGCGGTGAATGAACAGGGGTCCCCGGCCGTTGCTTCCTTGGCAAACCCGGGATCG]




>consensus_1979#1
GAGGTAGGTGAGAGTGACTGTCCAGACGCTCGACCGCACAAGTACCGCTCGTTCCTGCAG
ACGCGCCCCGACACGATGGAACAGCGGGCGATCGAGCTGGTCGCGAAGGTGGCCCAGCGG
CACGACGTTCGGGCACACATGTGCACCTGTCCACGGCCCGCGCCCTGTCAACGATCAGAG
CGGNCCGGGGCGCTCGGTGGACTCTGTCCTGAGGGCTGGANAATCTTGACAATCAAGTAT
TCTTGTNGGTGGGTCCGCGCGTAGGGNATGGTTGCGCTGGAACAGCTTCGCACCCAGANN
ATACGAACNGTTTGTTTGTCCCGCACCGAATTATNGGCTGGACCGNTACGCCAAACCCGG
GGTAAGGCCAATGTTTGTTTGTGGGGGCCGGACCCAGTTGNCAGGGCCCCCGCGGAATCA
ATTTGGACTTCCTTGAATTCGGTTGTTCGGGAGCCCATTTCCGCCCCCAAGNCTATCNGC
TCCCCCCATCCGTTGATANGGCCTTTGCCTTCAACCCCGGNACCCNGGGGCCANAACGCC
CNGGGCCACATGTGGGGTTAACACATCGTTTTCCCCTTCCCGAACGCGGGCCGGCTTGGC
GGNGGTTTGGGGNATTTATTCCTCTTCCCTGCCGTTTGGCNAGGCGTTCCTGGGTGGTTG
GTCCTCCTTNCTTTCCTTTTGGTGAGCCCTACGGGGCTTTGNTCCTGGCGCCGTGGGTTA
CCTGTNGGGNCTTAGGTTCCCGTCGTTACGCGAGCGGTGAATGAACAGGGGTCCCCGGCC
GTTGCTTCCTTGGCAAACCCGGGATCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1979#0      CAGAATCGGCACGAGGCACGCCGAGGTAGAGTGTCAGCGGCTGCAGAGTGACTGTCCCAG 60
consensus_1979#1      ---------------------------------GAGGTAGGTG-AGAGTGACTGTCC-AG 25
                                                          *  * ** ************* **

consensus_1979#0      ACCGCTCGACCCGCACAAGTACCGCTCGTTCCTGCAGACGCGCCCCGACACGATGGAACA 120
consensus_1979#1      AC-GCTCGACC-GCACAAGTACCGCTCGTTCCTGCAGACGCGCCCCGACACGATGGAACA 83
                      ** ******** ************************************************

consensus_1979#0      GCGGGCGATCGAGCTGGTCGCGAAGGTGGCCCAGCGGCACGACGTTCGGGCACACATCGT 180
consensus_1979#1      GCGGGCGATCGAGCTGGTCGCGAAGGTGGCCCAGCGGCACGACGTTCGGGCACACAT-GT 142
                      ********************************************************* **

consensus_1979#0      GCACCTGTCCACGGCCCGCGCCCTGCCAACGATCAGAGCGGCCCGGG-CGCTCGGCGCTC 239
consensus_1979#1      GCACCTGTCCACGGCCCGCGCCCTGTCAACGATCAGAGCGGNCCGGGGCGCTCGGTGGAC 202
                      ************************* *************** ***** ******* *  *

consensus_1979#0      GCCTGACGGTGGAAACCTGCCACCACTATCTGTCGCTGGCCGCCGAGGACGTGCCGGACG 299
consensus_1979#1      -TCTGTCC-TGAGGGCTGGANAATCTTGACAATCAAGTATTCTTGTNGGTGGGTC---CG 257
                        *** *  **    *  *  *    *  *  **          *  *  * * *   **

consensus_1979#0      CTCGCACCGAGTACAAGTGCTGTCCGCCGATACGCGGCCGCACCAACCGGGAGCAGCTGT 359
consensus_1979#1      CGCGTAGGGNATGGTTGCGCTGGA-ACAGCTTCGCACCCAGANNA--TACGAACNGTTT- 313
                      * ** *  *  *    * ****    * * * ***  **  *  *     ** * * *  

consensus_1979#0      GGCGCGCCGTGCAGGCCCGGGACATTGATCTGATCGTGTCGGACCATTCGCCCAGCACGC 419
consensus_1979#1      -GTTTGTCCCGCA---CCGAATTATNGGCTGGACCGNTACG--CCAAACCCGGGGTAAG- 366
                       *   * *  ***   ***    ** *    ** **   **  ***  * *   * * * 

consensus_1979#0      CCCAGCTGAAGCTGCTCACCGACGGCAAGCGGCAG--GGTAACTTCCTCGAGGCGTGGGG 477
consensus_1979#1      ----GCCAATGTTTGTTTGTGGGGGCCGGACCCAGTTGNCAGGGCCCCCGCGGAATCAAT 422
                          **  * * *  *    *  ***  *   ***  *  *    ** ** **  *    

consensus_1979#0      TGGCATTTCCTCGCTGCAGCTCGGGCTGCCCCTGTTCTGGACCGGCTGCCGGCGGTACGG 537
consensus_1979#1      TTGGACTTCCTTG----AATTCGGTTGTTCGGGAGCCCATTTCCGCCCCCAAGNCTATCN 478
                      * * * ***** *    *  ****     *      *     * **  **     **   

consensus_1979#0      GCTGTCGCTGCAGGAGACGGTCCGCCTGCTCTGCACCGAGCCGGCCCGGCTGAGCGGGCT 597
consensus_1979#1      GCT--CCCCCCATCCGTTGATANGGC--CTTTGCCTTCAACC--CCGGNACCCNGGGGCC 532
                      ***  * *  **   *  * *  * *  ** ***    * **  ** *       **** 

consensus_1979#0      GGACCATCGCAAGAGCCGGCTGGACGTTGGCCTACGACGGGGACATGTGTGTCTGGGATC 657
consensus_1979#1      ANAACGCCCNG------GGCCACATGTGGGGTTAACACATCGTTTTCCCCTTCCCGAACG 586
                        * *  *         ***   * ** **  **  **   *   *     **  * *  

consensus_1979#0      CGGAGGGTACGGTCAACCGTCACGGGAGGGACATTGCTCGAAGTTCAGCACAAAGCGANG 717
consensus_1979#1      CGGGCCGGCTTGGCGGNGGTT-TGGGGNATTTATTCCTCTTC-CCTGCCGTTTGGCNAGG 644
                      ***   *    * *    **   ***      *** ***         *     ** * *

consensus_1979#0      CCNTACTTAAACGAAAGCTTNCAGGGGCCGTTCNGTGCATGCACCGGATACTTGGGCGGG 777
consensus_1979#1      CGTT-CCTGGGTGGTTGGTCCT-----CCTTNCTTTCCTTTTGGTGAGCCCT---ACGGG 695
                      *  * * *    *   * *        ** * *  * * *     *    **    ****

consensus_1979#0      TCACTTGATCTAATCAAAGGCACCGGACCGTTGCCANCTTTTTNGGGGCCACCTTTTGGG 837
consensus_1979#1      GC-TTTGNTCCTGGC---GCCGTGGGTTACCTGTNGGGNCTTAGGTTCCCGTCGTTACGC 751
                       *  *** **    *   * *   **     **       **  *   **  * **  * 

consensus_1979#0      GNACGGAATACATGGTCCGAAANGGTCCCTAAAGGGCCGAGTATTCNACACACGACAAGG 897
consensus_1979#1      GAGCGG--TGAATGAAC---AGGGGTCCCC----GGCCGTTGCTTCCTTGGCAAACCCGG 802
                      *  ***  *  ***  *   *  ******     *****    ***        **  **

consensus_1979#0      AGTTTTANC 906
consensus_1979#1      GATCG---- 807
                        *