These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1979#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 906 fasta sequence [CAGAATCGGCACGAGGCACGCCGAGGTAGAGTGTCAGCGGCTGCAGAGTGACTGTCCCAGACCGCTCGACCCGCACAAGTACCGCTCGTTCCTGCAGACGCGCCCCGACACGATGGAACAGCGGGCGATCGAGCTGGTCGCGAAGGTGGCCCAGCGGCACGACGTTCGGGCACACATCGTGCACCTGTCCACGGCCCGCGCCCTGCCAACGATCAGAGCGGCCCGGGCGCTCGGCGCTCGCCTGACGGTGGAAACCTGCCACCACTATCTGTCGCTGGCCGCCGAGGACGTGCCGGACGCTCGCACCGAGTACAAGTGCTGTCCGCCGATACGCGGCCGCACCAACCGGGAGCAGCTGTGGCGCGCCGTGCAGGCCCGGGACATTGATCTGATCGTGTCGGACCATTCGCCCAGCACGCCCCAGCTGAAGCTGCTCACCGACGGCAAGCGGCAGGGTAACTTCCTCGAGGCGTGGGGTGGCATTTCCTCGCTGCAGCTCGGGCTGCCCCTGTTCTGGACCGGCTGCCGGCGGTACGGGCTGTCGCTGCAGGAGACGGTCCGCCTGCTCTGCACCGAGCCGGCCCGGCTGAGCGGGCTGGACCATCGCAAGAGCCGGCTGGACGTTGGCCTACGACGGGGACATGTGTGTCTGGGATCCGGAGGGTACGGTCAACCGTCACGGGAGGGACATTGCTCGAAGTTCAGCACAAAGCGANGCCNTACTTAAACGAAAGCTTNCAGGGGCCGTTCNGTGCATGCACCGGATACTTGGGCGGGTCACTTGATCTAATCAAAGGCACCGGACCGTTGCCANCTTTTTNGGGGCCACCTTTTGGGGNACGGAATACATGGTCCGAAANGGTCCCTAAAGGGCCGAGTATTCNACACACGACAAGGAGTTTTANC] [+] EMBL BX467758 [CAGAATCGGCACGAGGCACGCCGAGGTAGAGTGTCAGCGGCTGCAGAGTGACTGTCCCAGACCGCTCGACCCGCACAAGTACCGCTCGTTCCTGCAGACGCGCCCCGACACGATGGAACAGCGGGCGATCGAGCTGGTCGCGAAGGTGGCCCAGCGGCACGACGTTCGGGCACACATCGTGCACCTGTCCACGGCCCGCGCCCTGCCAACGATCAGAGCGGCCCGGGCGCTCGGCGCTCGCCTGACGGTGGAAACCTGCCACCACTATCTGTCGCTGGCCGCCGAGGACGTGCCGGACGCTCGCACCGAGTACAAGTGCTGTCCGCCGATACGCGGCCGCACCAACCGGGAGCAGCTGTGGCGCGCCGTGCAGGCCCGGGACATTGATCTGATCGTGTCGGACCATTCGCCCAGCACGCCCCAGCTGAAGCTGCTCACCGACGGCAAGCGGCAGGGTAACTTCCTCGAGGCGTGGGGTGGCATTTCCTCGCTGCAGCTCGGGCTGCCCCTGTTCTGGACCGGCTGCCGGCGGTACGGGCTGTCGCTGCAGGAGACGGTCCGCCTGCTCTGCACCGAGCCGGCCCGGCTGAGCGGGCTGGACCATCGCAAGAGCCGGCTGGACGTTGGCCTACGACGGGGACATGTGTGTCTGGGATCCGGAGGGTACGGTCAACCGTCACGGGAGGGACATTGCTCGAAGTTCAGCACAAAGCGANGCCNTACTTAAACGAAAGCTTNCAGGGGCCGTTCNGTGCATGCACCGGATACTTGGGCGGGTCACTTGATCTAATCAAAGGCACCGGACCGTTGCCANCTTTTTNGGGGCCACCTTTTGGGGNACGGAATACATGGTCCGAAANGGTCCCTAAAGGGCCGAGTATTCNACACACGACAAGGAGTTTTANC] consensusID : consensus_1979#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 807 fasta sequence [GAGGTAGGTGAGAGTGACTGTCCAGACGCTCGACCGCACAAGTACCGCTCGTTCCTGCAGACGCGCCCCGACACGATGGAACAGCGGGCGATCGAGCTGGTCGCGAAGGTGGCCCAGCGGCACGACGTTCGGGCACACATGTGCACCTGTCCACGGCCCGCGCCCTGTCAACGATCAGAGCGGNCCGGGGCGCTCGGTGGACTCTGTCCTGAGGGCTGGANAATCTTGACAATCAAGTATTCTTGTNGGTGGGTCCGCGCGTAGGGNATGGTTGCGCTGGAACAGCTTCGCACCCAGANNATACGAACNGTTTGTTTGTCCCGCACCGAATTATNGGCTGGACCGNTACGCCAAACCCGGGGTAAGGCCAATGTTTGTTTGTGGGGGCCGGACCCAGTTGNCAGGGCCCCCGCGGAATCAATTTGGACTTCCTTGAATTCGGTTGTTCGGGAGCCCATTTCCGCCCCCAAGNCTATCNGCTCCCCCCATCCGTTGATANGGCCTTTGCCTTCAACCCCGGNACCCNGGGGCCANAACGCCCNGGGCCACATGTGGGGTTAACACATCGTTTTCCCCTTCCCGAACGCGGGCCGGCTTGGCGGNGGTTTGGGGNATTTATTCCTCTTCCCTGCCGTTTGGCNAGGCGTTCCTGGGTGGTTGGTCCTCCTTNCTTTCCTTTTGGTGAGCCCTACGGGGCTTTGNTCCTGGCGCCGTGGGTTACCTGTNGGGNCTTAGGTTCCCGTCGTTACGCGAGCGGTGAATGAACAGGGGTCCCCGGCCGTTGCTTCCTTGGCAAACCCGGGATCG] [+] EMBL AL695020 [GAGGTAGGTGAGAGTGACTGTCCAGACGCTCGACCGCACAAGTACCGCTCGTTCCTGCAGACGCGCCCCGACACGATGGAACAGCGGGCGATCGAGCTGGTCGCGAAGGTGGCCCAGCGGCACGACGTTCGGGCACACATGTGCACCTGTCCACGGCCCGCGCCCTGTCAACGATCAGAGCGGNCCGGGGCGCTCGGTGGACTCTGTCCTGAGGGCTGGANAATCTTGACAATCAAGTATTCTTGTNGGTGGGTCCGCGCGTAGGGNATGGTTGCGCTGGAACAGCTTCGCACCCAGANNATACGAACNGTTTGTTTGTCCCGCACCGAATTATNGGCTGGACCGNTACGCCAAACCCGGGGTAAGGCCAATGTTTGTTTGTGGGGGCCGGACCCAGTTGNCAGGGCCCCCGCGGAATCAATTTGGACTTCCTTGAATTCGGTTGTTCGGGAGCCCATTTCCGCCCCCAAGNCTATCNGCTCCCCCCATCCGTTGATANGGCCTTTGCCTTCAACCCCGGNACCCNGGGGCCANAACGCCCNGGGCCACATGTGGGGTTAACACATCGTTTTCCCCTTCCCGAACGCGGGCCGGCTTGGCGGNGGTTTGGGGNATTTATTCCTCTTCCCTGCCGTTTGGCNAGGCGTTCCTGGGTGGTTGGTCCTCCTTNCTTTCCTTTTGGTGAGCCCTACGGGGCTTTGNTCCTGGCGCCGTGGGTTACCTGTNGGGNCTTAGGTTCCCGTCGTTACGCGAGCGGTGAATGAACAGGGGTCCCCGGCCGTTGCTTCCTTGGCAAACCCGGGATCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1979#0 CAGAATCGGCACGAGGCACGCCGAGGTAGAGTGTCAGCGGCTGCAGAGTGACTGTCCCAG 60 consensus_1979#1 ---------------------------------GAGGTAGGTG-AGAGTGACTGTCC-AG 25 * * ** ************* ** consensus_1979#0 ACCGCTCGACCCGCACAAGTACCGCTCGTTCCTGCAGACGCGCCCCGACACGATGGAACA 120 consensus_1979#1 AC-GCTCGACC-GCACAAGTACCGCTCGTTCCTGCAGACGCGCCCCGACACGATGGAACA 83 ** ******** ************************************************ consensus_1979#0 GCGGGCGATCGAGCTGGTCGCGAAGGTGGCCCAGCGGCACGACGTTCGGGCACACATCGT 180 consensus_1979#1 GCGGGCGATCGAGCTGGTCGCGAAGGTGGCCCAGCGGCACGACGTTCGGGCACACAT-GT 142 ********************************************************* ** consensus_1979#0 GCACCTGTCCACGGCCCGCGCCCTGCCAACGATCAGAGCGGCCCGGG-CGCTCGGCGCTC 239 consensus_1979#1 GCACCTGTCCACGGCCCGCGCCCTGTCAACGATCAGAGCGGNCCGGGGCGCTCGGTGGAC 202 ************************* *************** ***** ******* * * consensus_1979#0 GCCTGACGGTGGAAACCTGCCACCACTATCTGTCGCTGGCCGCCGAGGACGTGCCGGACG 299 consensus_1979#1 -TCTGTCC-TGAGGGCTGGANAATCTTGACAATCAAGTATTCTTGTNGGTGGGTC---CG 257 *** * ** * * * * * ** * * * * * ** consensus_1979#0 CTCGCACCGAGTACAAGTGCTGTCCGCCGATACGCGGCCGCACCAACCGGGAGCAGCTGT 359 consensus_1979#1 CGCGTAGGGNATGGTTGCGCTGGA-ACAGCTTCGCACCCAGANNA--TACGAACNGTTT- 313 * ** * * * * **** * * * *** ** * * ** * * * consensus_1979#0 GGCGCGCCGTGCAGGCCCGGGACATTGATCTGATCGTGTCGGACCATTCGCCCAGCACGC 419 consensus_1979#1 -GTTTGTCCCGCA---CCGAATTATNGGCTGGACCGNTACG--CCAAACCCGGGGTAAG- 366 * * * *** *** ** * ** ** ** *** * * * * * consensus_1979#0 CCCAGCTGAAGCTGCTCACCGACGGCAAGCGGCAG--GGTAACTTCCTCGAGGCGTGGGG 477 consensus_1979#1 ----GCCAATGTTTGTTTGTGGGGGCCGGACCCAGTTGNCAGGGCCCCCGCGGAATCAAT 422 ** * * * * * *** * *** * * ** ** ** * consensus_1979#0 TGGCATTTCCTCGCTGCAGCTCGGGCTGCCCCTGTTCTGGACCGGCTGCCGGCGGTACGG 537 consensus_1979#1 TTGGACTTCCTTG----AATTCGGTTGTTCGGGAGCCCATTTCCGCCCCCAAGNCTATCN 478 * * * ***** * * **** * * * ** ** ** consensus_1979#0 GCTGTCGCTGCAGGAGACGGTCCGCCTGCTCTGCACCGAGCCGGCCCGGCTGAGCGGGCT 597 consensus_1979#1 GCT--CCCCCCATCCGTTGATANGGC--CTTTGCCTTCAACC--CCGGNACCCNGGGGCC 532 *** * * ** * * * * * ** *** * ** ** * **** consensus_1979#0 GGACCATCGCAAGAGCCGGCTGGACGTTGGCCTACGACGGGGACATGTGTGTCTGGGATC 657 consensus_1979#1 ANAACGCCCNG------GGCCACATGTGGGGTTAACACATCGTTTTCCCCTTCCCGAACG 586 * * * *** * ** ** ** ** * * ** * * consensus_1979#0 CGGAGGGTACGGTCAACCGTCACGGGAGGGACATTGCTCGAAGTTCAGCACAAAGCGANG 717 consensus_1979#1 CGGGCCGGCTTGGCGGNGGTT-TGGGGNATTTATTCCTCTTC-CCTGCCGTTTGGCNAGG 644 *** * * * ** *** *** *** * ** * * consensus_1979#0 CCNTACTTAAACGAAAGCTTNCAGGGGCCGTTCNGTGCATGCACCGGATACTTGGGCGGG 777 consensus_1979#1 CGTT-CCTGGGTGGTTGGTCCT-----CCTTNCTTTCCTTTTGGTGAGCCCT---ACGGG 695 * * * * * * * ** * * * * * * ** **** consensus_1979#0 TCACTTGATCTAATCAAAGGCACCGGACCGTTGCCANCTTTTTNGGGGCCACCTTTTGGG 837 consensus_1979#1 GC-TTTGNTCCTGGC---GCCGTGGGTTACCTGTNGGGNCTTAGGTTCCCGTCGTTACGC 751 * *** ** * * * ** ** ** * ** * ** * consensus_1979#0 GNACGGAATACATGGTCCGAAANGGTCCCTAAAGGGCCGAGTATTCNACACACGACAAGG 897 consensus_1979#1 GAGCGG--TGAATGAAC---AGGGGTCCCC----GGCCGTTGCTTCCTTGGCAAACCCGG 802 * *** * *** * * ****** ***** *** ** ** consensus_1979#0 AGTTTTANC 906 consensus_1979#1 GATCG---- 807 * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||