These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1987#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 637 fasta sequence [ACCTGGAAGGCGCACGAGATGGACAACTCGGACAACGAGAGCGTCGACTCGCAGAGCGACGACCCGCTGAAGCACGCCGGCATCTACACGGCCGAGGAGGCGACGCGCATCACGAAGGAAAAGCTGACCCGCCTGCAGACGCTGTACATCGAGCAGATCCACCGCCTGCAGCACGTGTTGCGCGAGCGCCGGCGCAACTATCTGCGGGTGCAGCGGGCCGAGCGCGACTATCACTGCAGCATCTTCGACCAGGTCAAGCAGACGCCCCGCGAGCGTATGCTGTACGAGCAGCTGAAGGGGTTGAACCGGTACCACCGGAAGCACGGGGTGGAGGCGATTCTGCAGCGCAAATATCTGGAGAAGCGGGCCAAAGCGACGGAGGGCCTGCAGCAGAAACCCCCCTCGCTGCCCAAGTGTGCGTACACGGAGGGTGGGGTGAAGTGCGGGGAGCGCACCCTGCCCTGCTGCAAGCACTGCCGCAAGCACATCCTGGAGGACAAGAAGCAGGTGCTGTTCCGGGCGTGCGGCATCGAGAAGAGTGGCGTGGTGTGCCAGGAACCGCTGGCCGGCCTGTTCGAGAACGTGACCTGCCCGCTGCACATGGAGCTGCCGGCGCAGCGATCGTTCAACAAGCGCA] [+] EMBL BX607786 [ACCTGGAAGGCGCACGAGATGGACAACTCGGACAACGAGAGCGTCGACTCGCAGAGCGACGACCCGCTGAAGCACGCCGGCATCTACACGGCCGAGGAGGCGACGCGCATCACGAAGGAAAAGCTGACCCGCCTGCAGACGCTGTACATCGAGCAGATCCACCGCCTGCAGCACGTGTTGCGCGAGCGCCGGCGCAACTATCTGCGGGTGCAGCGGGCCGAGCGCGACTATCACTGCAGCATCTTCGACCAGGTCAAGCAGACGCCCCGCGAGCGTATGCTGTACGAGCAGCTGAAGGGGTTGAACCGGTACCACCGGAAGCACGGGGTGGAGGCGATTCTGCAGCGCAAATATCTGGAGAAGCGGGCCAAAGCGACGGAGGGCCTGCAGCAGAAACCCCCCTCGCTGCCCAAGTGTGCGTACACGGAGGGTGGGGTGAAGTGCGGGGAGCGCACCCTGCCCTGCTGCAAGCACTGCCGCAAGCACATCCTGGAGGACAAGAAGCAGGTGCTGTTCCGGGCGTGCGGCATCGAGAAGAGTGGCGTGGTGTGCCAGGAACCGCTGGCCGGCCTGTTCGAGAACGTGACCTGCCCGCTGCACATGGAGCTGCCGGCGCAGCGATCGTTCAACAAGCGCA] consensusID : consensus_1987#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 580 fasta sequence [TCCCGAGGTTACTGCGCAGCACATCTGGAGGACAGAAGCAGGTGCTGTTCCGGGCGTGCGGCATCGAGAAGAGTGGCGTGGTGTGCCAGGAACCGCTGGCCGGCCTGTTCGAGAACGTGACCTGCCCGCTGCACATGGAGCTGCCGGCGCAGCGATCGTTCAACAAGCGCAAGTACGAATCGGAATCGGAGGGAGAGGGCGAGGTGAGCGGGATGGAGCCGCCGGTGGTGGTGGTGGCTGGGGCGGAAAAATCATCCGCCAAAGCGGCGAACGAGACGAACGCTGCTACAGCGCAGGCCGGAGCGCCGGAGGACAAGAAGGCGGTAAAGGTGGAGCCAAAGGCAGGTGGTGATGGCACGGTGGACGCCAAGGCTCCGGTAAAGGTGGAAAACAACAAGCGCAAAGTGATCAAAACGGAACCGGTAACGCCGGTACCGCGGGTCCGCAATACACGGTCGTCCCGGGCAGCAATGGCGATGCAGGAAGATGCTCCGGCTGAGCAACCTGCCCCCGAACAGCAAGCAGCAGAAGGCGAATTGAAGAAGGAACAAACCGAAGCGAAGGAAAACGAAAACAATGT] [+] EMBL AL695062 [TCCCGAGGTTACTGCGCAGCACATCTGGAGGACAGAAGCAGGTGCTGTTCCGGGCGTGCGGCATCGAGAAGAGTGGCGTGGTGTGCCAGGAACCGCTGGCCGGCCTGTTCGAGAACGTGACCTGCCCGCTGCACATGGAGCTGCCGGCGCAGCGATCGTTCAACAAGCGCAAGTACGAATCGGAATCGGAGGGAGAGGGCGAGGTGAGCGGGATGGAGCCGCCGGTGGTGGTGGTGGCTGGGGCGGAAAAATCATCCGCCAAAGCGGCGAACGAGACGAACGCTGCTACAGCGCAGGCCGGAGCGCCGGAGGACAAGAAGGCGGTAAAGGTGGAGCCAAAGGCAGGTGGTGATGGCACGGTGGACGCCAAGGCTCCGGTAAAGGTGGAAAACAACAAGCGCAAAGTGATCAAAACGGAACCGGTAACGCCGGTACCGCGGGTCCGCAATACACGGTCGTCCCGGGCAGCAATGGCGATGCAGGAAGATGCTCCGGCTGAGCAACCTGCCCCCGAACAGCAAGCAGCAGAAGGCGAATTGAAGAAGGAACAAACCGAAGCGAAGGAAAACGAAAACAATGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1987#0 ACCTGGAAGGCGCACGAGATGGACAACTCGGACAACGAGAGCGTCGACTCGCAGAGCGAC 60 consensus_1987#1 -----------TCCCGAGGTTACTGCGCAGCACATCTGGAGGACAGA--AGCAG-GTGCT 46 * **** * * *** * *** ** **** * * consensus_1987#0 GACCCGCTGAAGCACGCCGGCATCTACACGGCCGAGGAGGCGACGCGCATCACGAAGGAA 120 consensus_1987#1 GTTCCG----GGCGTGC-GGCATCGAGAAGA-----GTGGCGTGGTGTGCCA----GGAA 92 * *** ** ** ****** * * * * **** * * ** **** consensus_1987#0 AAGCTGACCCGCCTGCAGACGCTGTACATCGAGCAGATCCACCGCCTGCAGCACGTGTTG 180 consensus_1987#1 CCGCTGGCCGGCCTGT------------TCGAGAACGTGACCTGCCCGCTGCACATGGAG 140 **** ** ***** ***** * * * *** ** **** ** * consensus_1987#0 CGCGAGCGCCGGCGCAACTATCTGCGGGTGCAGCGGGC-CGAGCGCGACTATCACTGCAG 239 consensus_1987#1 C-----TGCCGGCGCAGCGATC-----GTTCAACAAGCGCAAGTACGA-----ATCGGAA 185 * ********* * *** ** ** * ** * ** *** * * * consensus_1987#0 CATCTTCGACCAGGTCAAGCAGACGCCCCGCGAGCGTATGCTGTACGAGCAGCTGAAGGG 299 consensus_1987#1 TCGGAGGGAGAGGGCGAGGTGAGCGGGATGGAGCCGCCGGTGGTGGTGGTGGCTGGGGCG 245 ** ** * * ** * ** * ** * **** * * consensus_1987#0 GTTGAACCGGTACCACCGGAAGCACGGGGTGGAGGCGATTCTGCAGCGCAAATATCTGGA 359 consensus_1987#1 GAAAAATCATCCGCCAAAGCGGCGAACGAGACGAACGCTGCTACAGCGCAGG---CCGGA 302 * ** * * * ** * ** * ** ******* * *** consensus_1987#0 GAAGCGG--GCCAAAGCGACGGAGGGCCTGCAGC-AGAAACCCCCCTCGCTGCCCAAGTG 416 consensus_1987#1 GCGCCGGAGGACAAGAAGGCGGTAAAGGTGGAGCCAAAGGCAGGTGGTGATGGCACGGTG 362 * *** * *** * *** ** *** * * * * ** * *** consensus_1987#0 TGCGT--ACACGGAGGGTGGGGTGAAGTGCGGGGAGCGCACCCTGCCCTGC-TGCAAGCA 473 consensus_1987#1 GACGCCAAGGCTCCGGTAAAGGTGGAAAACAACAAGCGCAAAGTGATCAAAACGGAACCG 422 ** * * ** **** * * ****** ** * * ** * consensus_1987#0 CTGCCGCAAGCACATCCTGGAGGACAAGAAGCAGGTGCTGTTCCGGGCGTGCGGCATCGA 533 consensus_1987#1 GTAACGCCGGTACCGC---GGGTCCGCAATACACG-GTCGTCCCGGGCA-GCAATGGCGA 477 * *** * ** * * * * * ** * * ** ****** ** *** consensus_1987#0 -GAAGAGTGGCGTGGTGTGCCAGGAACCGCTGGCCGGCCTGTTCGAGAACGTGACCTGCC 592 consensus_1987#1 TGCAGGAAGATGCTCCGGCTGAGCAACCTGCCCCCGAACAG--CAAGCA-GCAGAAGGCG 534 * ** * * * ** **** *** * * * ** * * ** consensus_1987#0 CGCTGCACATGGAGCTGCCGGCGCAGCGATCGTTCAACAAGCGCA---- 637 consensus_1987#1 AATTGAAGAAGGAACAAAC--CGAAGCGAAGGAA-AACGAAAACAATGT 580 ** * * *** * * ** ***** * *** * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||