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Anopheles gambiae
cluster # 1991 cluster # 1991       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1991#0 length = 1218 sequences # 1  
consensus_1991#1 length = 567 sequences # 1  

consensusID : consensus_1991#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1218
fasta sequence
                              [GAATCCCGAGGTTNAGCCCGGCTGAGCCCTGCAGCACATATCGGTGTAGCAGCAATCCCGCCGCAGCTCGAGCCCCGCATCACCAACAGCAACGCGCAAGTTGCTTCGGCTGCCGCACCTCAGCACATCATCGACGAGGTCGCAATCCCTGCCAAGGCTCTGAGTCCTGCCTCATCATCGGCAACCTGCAGGTTGCTTTGACTGCAGCACGGCAGCATGTCATCTGGCGAGGTCGCATTCCCTGCCGCGGCTCGAGCCCCGCATCAACAATGGCGACACTGTAAGTCTGCCTCGGCTGCAACGCAGCAGCCTCGCATCATAGGCGACGACACATTCTTGCTCACCTTGCAGCAAACCAGCACGTCAGCCAGAGACGCCATCGCTGTGGCCGGCCATTTGCTGTCGCCGGTCATGGCCTGCCTGGTGCAAGGTTTCATTGCGGACCAACCTCACTCCCTGGCACGGCGTAGACAGCGACTGCTACAACCGAGTGACAGCGAACTGCGGCATCATCGCCGCCGCCCGGGACAACGGTGCACCATAGCAGACGCTCCCGAGGACAGCGAACGCGGNATCATCGCCGCGCCCGGGGACAACAGGTCATCATCAACAGTCGCAACTCGCGGAACGCGACGCGGCATCATCGCAAGACCGCCCCGGGAACATTGAGCGCAGCAGCATCACGATTNCCCACTAAGTACCATCGGTCGAACGGGTGTCACACAGCTGTATACGTGTGGAATACACCGNGGTCGGTTCGACCTTCGGTATTAAACGGGGCAGACTGTCATGTGGATANNAACGTTGCCGAAGCCCNNGCGATTGCCCGAACAATTACCCTCGCAGGNNGTNAACNCTCCAGACATTCCACTGCGCCCAANCGCACAAATACGCGCACTAACGAGATGCGGGCANAACAGTTTTGACNAAGGGNACCCAAAGGAGNAGTGTNTAAAAGGGCAANGGTCACACAAAGGACCCCGCNNAGTTCACAGCGGCGATTTGTCGGGCACCACACACAAAAATTGGCGTGCATCATTCAGACTATAGNAGTCTAACAACCAAAACAACAAAGGATCCCNCANTNGTTCTCGTGTCTCTCTNNCCNNNNTNTNTCCNNCCTCACGACCCGACNACGAANAACTNCNNTTCGACGTAGCNCTANCANACGNNANNAGCCATCGACAACCGANTAGANTCAAAGACAGTGCATACCGA]

[+] EMBL AL695078             [GAATCCCGAGGTTNAGCCCGGCTGAGCCCTGCAGCACATATCGGTGTAGCAGCAATCCCGCCGCAGCTCGAGCCCCGCATCACCAACAGCAACGCGCAAGTTGCTTCGGCTGCCGCACCTCAGCACATCATCGACGAGGTCGCAATCCCTGCCAAGGCTCTGAGTCCTGCCTCATCATCGGCAACCTGCAGGTTGCTTTGACTGCAGCACGGCAGCATGTCATCTGGCGAGGTCGCATTCCCTGCCGCGGCTCGAGCCCCGCATCAACAATGGCGACACTGTAAGTCTGCCTCGGCTGCAACGCAGCAGCCTCGCATCATAGGCGACGACACATTCTTGCTCACCTTGCAGCAAACCAGCACGTCAGCCAGAGACGCCATCGCTGTGGCCGGCCATTTGCTGTCGCCGGTCATGGCCTGCCTGGTGCAAGGTTTCATTGCGGACCAACCTCACTCCCTGGCACGGCGTAGACAGCGACTGCTACAACCGAGTGACAGCGAACTGCGGCATCATCGCCGCCGCCCGGGACAACGGTGCACCATAGCAGACGCTCCCGAGGACAGCGAACGCGGNATCATCGCCGCGCCCGGGGACAACAGGTCATCATCAACAGTCGCAACTCGCGGAACGCGACGCGGCATCATCGCAAGACCGCCCCGGGAACATTGAGCGCAGCAGCATCACGATTNCCCACTAAGTACCATCGGTCGAACGGGTGTCACACAGCTGTATACGTGTGGAATACACCGNGGTCGGTTCGACCTTCGGTATTAAACGGGGCAGACTGTCATGTGGATANNAACGTTGCCGAAGCCCNNGCGATTGCCCGAACAATTACCCTCGCAGGNNGTNAACNCTCCAGACATTCCACTGCGCCCAANCGCACAAATACGCGCACTAACGAGATGCGGGCANAACAGTTTTGACNAAGGGNACCCAAAGGAGNAGTGTNTAAAAGGGCAANGGTCACACAAAGGACCCCGCNNAGTTCACAGCGGCGATTTGTCGGGCACCACACACAAAAATTGGCGTGCATCATTCAGACTATAGNAGTCTAACAACCAAAACAACAAAGGATCCCNCANTNGTTCTCGTGTCTCTCTNNCCNNNNTNTNTCCNNCCTCACGACCCGACNACGAANAACTNCNNTTCGACGTAGCNCTANCANACGNNANNAGCCATCGACAACCGANTAGANTCAAAGACAGTGCATACCGA]


>consensus_1991#0 GAATCCCGAGGTTNAGCCCGGCTGAGCCCTGCAGCACATATCGGTGTAGCAGCAATCCCG CCGCAGCTCGAGCCCCGCATCACCAACAGCAACGCGCAAGTTGCTTCGGCTGCCGCACCT CAGCACATCATCGACGAGGTCGCAATCCCTGCCAAGGCTCTGAGTCCTGCCTCATCATCG GCAACCTGCAGGTTGCTTTGACTGCAGCACGGCAGCATGTCATCTGGCGAGGTCGCATTC CCTGCCGCGGCTCGAGCCCCGCATCAACAATGGCGACACTGTAAGTCTGCCTCGGCTGCA ACGCAGCAGCCTCGCATCATAGGCGACGACACATTCTTGCTCACCTTGCAGCAAACCAGC ACGTCAGCCAGAGACGCCATCGCTGTGGCCGGCCATTTGCTGTCGCCGGTCATGGCCTGC CTGGTGCAAGGTTTCATTGCGGACCAACCTCACTCCCTGGCACGGCGTAGACAGCGACTG CTACAACCGAGTGACAGCGAACTGCGGCATCATCGCCGCCGCCCGGGACAACGGTGCACC ATAGCAGACGCTCCCGAGGACAGCGAACGCGGNATCATCGCCGCGCCCGGGGACAACAGG TCATCATCAACAGTCGCAACTCGCGGAACGCGACGCGGCATCATCGCAAGACCGCCCCGG GAACATTGAGCGCAGCAGCATCACGATTNCCCACTAAGTACCATCGGTCGAACGGGTGTC ACACAGCTGTATACGTGTGGAATACACCGNGGTCGGTTCGACCTTCGGTATTAAACGGGG CAGACTGTCATGTGGATANNAACGTTGCCGAAGCCCNNGCGATTGCCCGAACAATTACCC TCGCAGGNNGTNAACNCTCCAGACATTCCACTGCGCCCAANCGCACAAATACGCGCACTA ACGAGATGCGGGCANAACAGTTTTGACNAAGGGNACCCAAAGGAGNAGTGTNTAAAAGGG CAANGGTCACACAAAGGACCCCGCNNAGTTCACAGCGGCGATTTGTCGGGCACCACACAC AAAAATTGGCGTGCATCATTCAGACTATAGNAGTCTAACAACCAAAACAACAAAGGATCC CNCANTNGTTCTCGTGTCTCTCTNNCCNNNNTNTNTCCNNCCTCACGACCCGACNACGAA NAACTNCNNTTCGACGTAGCNCTANCANACGNNANNAGCCATCGACAACCGANTAGANTC AAAGACAGTGCATACCGA



consensusID : consensus_1991#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 567
fasta sequence
                              [CCGAGAGGAGTGTGTTACAGGCTACCGGTCGAGCAGGGCTCCCGGTAGGGCTCACGGTGCGGCTCGTGCGTGCGGCCCATTACAAGTTTTAATTTGTTGTGTTTTGTATTATTTAATTCGTTTAATAAATGTGTAAATGTGCAAAACATAAAAGTGGCGACGAGGATGGGATCCTCTTGCGCAAGGAGGATCCTACAGAACCCGCGGCAGCCATCGCGTTTCGTCTGGCCTTTCTGCAGCGTCAGTGCAGCGGCCATCGCGATGGCACGGTTCCCTGTGCCTTTGGGATACCGCGGAACATCGGGCCGCCGCCACCGCAGACACCGTGGCCCCGGCTGCTGTCCCATCACTGGCGACCGCTGCATTGGGCAGCCGGCTACACACCACCCACTTATTAAGGGCGACTTCACATTCCGCCCCGGCTCGAGCCCTGCAGCACGTCATCGGCGAAGCAGCTATCCCGCCGCGGCTCGAGCCCCGCATCACCAACGGCGACACGTAAGTCGCCTCGGCTGCAACGCAGCAGCCTCGCATCATAGGCGACGACACATTCCGCCTCACCTGCAG]

[+] EMBL BM606935             [CCGAGAGGAGTGTGTTACAGGCTACCGGTCGAGCAGGGCTCCCGGTAGGGCTCACGGTGCGGCTCGTGCGTGCGGCCCATTACAAGTTTTAATTTGTTGTGTTTTGTATTATTTAATTCGTTTAATAAATGTGTAAATGTGCAAAACATAAAAGTGGCGACGAGGATGGGATCCTCTTGCGCAAGGAGGATCCTACAGAACCCGCGGCAGCCATCGCGTTTCGTCTGGCCTTTCTGCAGCGTCAGTGCAGCGGCCATCGCGATGGCACGGTTCCCTGTGCCTTTGGGATACCGCGGAACATCGGGCCGCCGCCACCGCAGACACCGTGGCCCCGGCTGCTGTCCCATCACTGGCGACCGCTGCATTGGGCAGCCGGCTACACACCACCCACTTATTAAGGGCGACTTCACATTCCGCCCCGGCTCGAGCCCTGCAGCACGTCATCGGCGAAGCAGCTATCCCGCCGCGGCTCGAGCCCCGCATCACCAACGGCGACACGTAAGTCGCCTCGGCTGCAACGCAGCAGCCTCGCATCATAGGCGACGACACATTCCGCCTCACCTGCAG]


>consensus_1991#1 CCGAGAGGAGTGTGTTACAGGCTACCGGTCGAGCAGGGCTCCCGGTAGGGCTCACGGTGC GGCTCGTGCGTGCGGCCCATTACAAGTTTTAATTTGTTGTGTTTTGTATTATTTAATTCG TTTAATAAATGTGTAAATGTGCAAAACATAAAAGTGGCGACGAGGATGGGATCCTCTTGC GCAAGGAGGATCCTACAGAACCCGCGGCAGCCATCGCGTTTCGTCTGGCCTTTCTGCAGC GTCAGTGCAGCGGCCATCGCGATGGCACGGTTCCCTGTGCCTTTGGGATACCGCGGAACA TCGGGCCGCCGCCACCGCAGACACCGTGGCCCCGGCTGCTGTCCCATCACTGGCGACCGC TGCATTGGGCAGCCGGCTACACACCACCCACTTATTAAGGGCGACTTCACATTCCGCCCC GGCTCGAGCCCTGCAGCACGTCATCGGCGAAGCAGCTATCCCGCCGCGGCTCGAGCCCCG CATCACCAACGGCGACACGTAAGTCGCCTCGGCTGCAACGCAGCAGCCTCGCATCATAGG CGACGACACATTCCGCCTCACCTGCAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1991#0      GAATCCCGAGGTTNAGCCCGGCTGAGCCCTGCAGCACATATCGGTGTAGCAGCAATCCCG 60
consensus_1991#1      ------------------------------------------------------------
                                                                                  

consensus_1991#0      CCGCAGCTCGAGCCCCGCATCACCAACAGCAACGCGCAAGTTGCTTCGGCTGCCGCACCT 120
consensus_1991#1      ------------------------------------------------------------
                                                                                  

consensus_1991#0      CAGCACATCATCGACGAGGTCGCAATCCCTGCCAAGGCTCTGAGTCCTGCCTCATCATCG 180
consensus_1991#1      ------------------------------------------------------------
                                                                                  

consensus_1991#0      GCAACCTGCAGGTTGCTTTGACTGCAGCACGGCAGCATGTCATCTGGCGAGGTCGCATTC 240
consensus_1991#1      ------------------------------------------------------------
                                                                                  

consensus_1991#0      CCTGCCGCGGCTCGAGCCCCGCATCAACAATGGCGACACTGTAAGTCTGCCTCGGCTGCA 300
consensus_1991#1      ------------------------------------------------------------
                                                                                  

consensus_1991#0      ACGCAGCAGCCTCGCATCATAGGCGACGACACATTCTTGCTCACCTTGCAGCAAACCAGC 360
consensus_1991#1      ------------------------------------------------------------
                                                                                  

consensus_1991#0      ACGTCAGCCAGAGACGCCATCGCTGTGGCCGGCCATTTGCTGTCGCCGGTCATGGCCTGC 420
consensus_1991#1      ------------------------------------------------------------
                                                                                  

consensus_1991#0      CTGGTGCAAGGTTTCATTGCGGACCAACCTCACTCCCTGGCACGGCGTAGACAGCGACTG 480
consensus_1991#1      ------------------------------------------------------------
                                                                                  

consensus_1991#0      CTACAACCGAGTGACAGCGAACTGCGGCATCATCGCCGCCGCCCGGGACAACGGTGCACC 540
consensus_1991#1      ------------------------------------------------------------
                                                                                  

consensus_1991#0      ATAGCAGACGCTCCCGAGGACAGCGAACGCGGNATCATCGCCGCGCCCGGGGACAACAGG 600
consensus_1991#1      ----------------------------------------------CCGAGAGGAGTGTG 14
                                                                    *** *   *    *

consensus_1991#0      TCATCATCAACAGTCGCAACTCGCGGAACGCGACGCGGCATCATCGCAAGACCGCCCCGG 660
consensus_1991#1      TTACAGGCTACCG--GTCGAGCAGGGCTCCCGGTAGGGC----TCACGGTGCGGCTC--- 65
                      * *    * ** *  *     *  **  * **    ***    ** *    * ** *   

consensus_1991#0      GAACATTGAGCGCAGCAGCATCACGATTNCCCACTAAGTACCATCGGTCGAACGGGTGTC 720
consensus_1991#1      GTGCGTGCGGCCCATTACAAGTTTTAATTTGTTGTGTTTTGTATTATTTAATT---CGTT 122
                      *  * *   ** **  *  *     * *      *   *   **   *  *      ** 

consensus_1991#0      ACACAGCTGTATACGTGTGGAATACACCGNGGTCGGTTCGACCTTCGGTATTAAACGGGG 780
consensus_1991#1      TAATAAATGTGTAAATGTGCAAAACATAAAAGTGGCGACGAGGAT-GGGATCCTCTTGCG 181
                        * *  *** **  **** ** ***     ** *   ***   * ** **      * *

consensus_1991#0      CAGACTGTCATGTGGATANNAACGTTGCCGAAGCCCNNGCGATT-GCCCGAACAATTACC 839
consensus_1991#1      CAAGG----AGGATCCTACAGAACCCGCGGCAGCCATCGCGTTTCGTCTGGCCTTTCTGC 237
                      **       * *    **   *    ** * ****   *** ** * * *  *  *   *

consensus_1991#0      CTCG-CAGGNNGTNAACNCTCCAGACATTCCACTGCGCCCAANCGCACAAATAC-GCGCA 897
consensus_1991#1      AGCGTCAGTGCAGCGGCCATCGCGATGGCACGGTTCCCTGTGCCTTTGGGATACCGCGGA 297
                        ** ***        *  **  **     *  * * *     *      **** *** *

consensus_1991#0      CTAACGAGATGCGGGCANAACAGTTTTGACNAAGGGNACCCAAAGGAGNAGTGTNTAAAA 957
consensus_1991#1      ACATCGGGCCGCCGCCACCGCAG-----ACACCGTGGCCCC--GGCTGCTGTCCCATCAC 350
                        * ** *  ** * **   ***     **   * *  ***   *  *  **      * 

consensus_1991#0      GGGCAANGGTCACACAAAGGACCCCGCNNAGTTCACAGCGGCGATTTGTCGGGCACCACA 1017
consensus_1991#1      TGGCGACCGCTGCATTGGGCAGCCGGCTA----CACACCACCCACTTATTAAGGGCGAC- 405
                       *** *  *   **    * * ** **      **** *  * * ** *   *  * ** 

consensus_1991#0      CACAAAAATTGGCGTGCATCATTCAGACTATAGNAGTCTAACAACCAAAACAACAAAGGA 1077
consensus_1991#1      TTCACATTCCGCCCCGGCTCGAGC--CCTGCAGCACGTCATCGGC-GAAGCAGCTA---- 458
                        ** *    * *  *  **   *   **  ** *    * *  *  ** ** * *    

consensus_1991#0      TCCCNCANTNGTTCTCGTGTCTCTCTNNCCNNNNTNTNTCCNNCCTCACGACCCGACNAC 1137
consensus_1991#1      TCCCGCCGCGG--CTCGAGCCCCGCATCACCAACGGCGACACGTAAGTCGCCTCGGCTGC 516
                      **** *    *  **** * * * *    *         *        ** * ** *  *

consensus_1991#0      GA-ANAACTNCNNTTCGACGTAGCNCTANCANACGNNANNAGCCATCGACAACCGANTAG 1196
consensus_1991#1      AACGCAGCAGCCTCGCATCATAG-GCGACGACACATTCCGCCTCACCTGCAG-------- 567
                       *   * *  *    *  * ***  * *  * **         ** *  **         

consensus_1991#0      ANTCAAAGACAGTGCATACCGA 1218
consensus_1991#1      ----------------------
                                            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)