These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1991#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1218 fasta sequence [GAATCCCGAGGTTNAGCCCGGCTGAGCCCTGCAGCACATATCGGTGTAGCAGCAATCCCGCCGCAGCTCGAGCCCCGCATCACCAACAGCAACGCGCAAGTTGCTTCGGCTGCCGCACCTCAGCACATCATCGACGAGGTCGCAATCCCTGCCAAGGCTCTGAGTCCTGCCTCATCATCGGCAACCTGCAGGTTGCTTTGACTGCAGCACGGCAGCATGTCATCTGGCGAGGTCGCATTCCCTGCCGCGGCTCGAGCCCCGCATCAACAATGGCGACACTGTAAGTCTGCCTCGGCTGCAACGCAGCAGCCTCGCATCATAGGCGACGACACATTCTTGCTCACCTTGCAGCAAACCAGCACGTCAGCCAGAGACGCCATCGCTGTGGCCGGCCATTTGCTGTCGCCGGTCATGGCCTGCCTGGTGCAAGGTTTCATTGCGGACCAACCTCACTCCCTGGCACGGCGTAGACAGCGACTGCTACAACCGAGTGACAGCGAACTGCGGCATCATCGCCGCCGCCCGGGACAACGGTGCACCATAGCAGACGCTCCCGAGGACAGCGAACGCGGNATCATCGCCGCGCCCGGGGACAACAGGTCATCATCAACAGTCGCAACTCGCGGAACGCGACGCGGCATCATCGCAAGACCGCCCCGGGAACATTGAGCGCAGCAGCATCACGATTNCCCACTAAGTACCATCGGTCGAACGGGTGTCACACAGCTGTATACGTGTGGAATACACCGNGGTCGGTTCGACCTTCGGTATTAAACGGGGCAGACTGTCATGTGGATANNAACGTTGCCGAAGCCCNNGCGATTGCCCGAACAATTACCCTCGCAGGNNGTNAACNCTCCAGACATTCCACTGCGCCCAANCGCACAAATACGCGCACTAACGAGATGCGGGCANAACAGTTTTGACNAAGGGNACCCAAAGGAGNAGTGTNTAAAAGGGCAANGGTCACACAAAGGACCCCGCNNAGTTCACAGCGGCGATTTGTCGGGCACCACACACAAAAATTGGCGTGCATCATTCAGACTATAGNAGTCTAACAACCAAAACAACAAAGGATCCCNCANTNGTTCTCGTGTCTCTCTNNCCNNNNTNTNTCCNNCCTCACGACCCGACNACGAANAACTNCNNTTCGACGTAGCNCTANCANACGNNANNAGCCATCGACAACCGANTAGANTCAAAGACAGTGCATACCGA] [+] EMBL AL695078 [GAATCCCGAGGTTNAGCCCGGCTGAGCCCTGCAGCACATATCGGTGTAGCAGCAATCCCGCCGCAGCTCGAGCCCCGCATCACCAACAGCAACGCGCAAGTTGCTTCGGCTGCCGCACCTCAGCACATCATCGACGAGGTCGCAATCCCTGCCAAGGCTCTGAGTCCTGCCTCATCATCGGCAACCTGCAGGTTGCTTTGACTGCAGCACGGCAGCATGTCATCTGGCGAGGTCGCATTCCCTGCCGCGGCTCGAGCCCCGCATCAACAATGGCGACACTGTAAGTCTGCCTCGGCTGCAACGCAGCAGCCTCGCATCATAGGCGACGACACATTCTTGCTCACCTTGCAGCAAACCAGCACGTCAGCCAGAGACGCCATCGCTGTGGCCGGCCATTTGCTGTCGCCGGTCATGGCCTGCCTGGTGCAAGGTTTCATTGCGGACCAACCTCACTCCCTGGCACGGCGTAGACAGCGACTGCTACAACCGAGTGACAGCGAACTGCGGCATCATCGCCGCCGCCCGGGACAACGGTGCACCATAGCAGACGCTCCCGAGGACAGCGAACGCGGNATCATCGCCGCGCCCGGGGACAACAGGTCATCATCAACAGTCGCAACTCGCGGAACGCGACGCGGCATCATCGCAAGACCGCCCCGGGAACATTGAGCGCAGCAGCATCACGATTNCCCACTAAGTACCATCGGTCGAACGGGTGTCACACAGCTGTATACGTGTGGAATACACCGNGGTCGGTTCGACCTTCGGTATTAAACGGGGCAGACTGTCATGTGGATANNAACGTTGCCGAAGCCCNNGCGATTGCCCGAACAATTACCCTCGCAGGNNGTNAACNCTCCAGACATTCCACTGCGCCCAANCGCACAAATACGCGCACTAACGAGATGCGGGCANAACAGTTTTGACNAAGGGNACCCAAAGGAGNAGTGTNTAAAAGGGCAANGGTCACACAAAGGACCCCGCNNAGTTCACAGCGGCGATTTGTCGGGCACCACACACAAAAATTGGCGTGCATCATTCAGACTATAGNAGTCTAACAACCAAAACAACAAAGGATCCCNCANTNGTTCTCGTGTCTCTCTNNCCNNNNTNTNTCCNNCCTCACGACCCGACNACGAANAACTNCNNTTCGACGTAGCNCTANCANACGNNANNAGCCATCGACAACCGANTAGANTCAAAGACAGTGCATACCGA] consensusID : consensus_1991#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence [CCGAGAGGAGTGTGTTACAGGCTACCGGTCGAGCAGGGCTCCCGGTAGGGCTCACGGTGCGGCTCGTGCGTGCGGCCCATTACAAGTTTTAATTTGTTGTGTTTTGTATTATTTAATTCGTTTAATAAATGTGTAAATGTGCAAAACATAAAAGTGGCGACGAGGATGGGATCCTCTTGCGCAAGGAGGATCCTACAGAACCCGCGGCAGCCATCGCGTTTCGTCTGGCCTTTCTGCAGCGTCAGTGCAGCGGCCATCGCGATGGCACGGTTCCCTGTGCCTTTGGGATACCGCGGAACATCGGGCCGCCGCCACCGCAGACACCGTGGCCCCGGCTGCTGTCCCATCACTGGCGACCGCTGCATTGGGCAGCCGGCTACACACCACCCACTTATTAAGGGCGACTTCACATTCCGCCCCGGCTCGAGCCCTGCAGCACGTCATCGGCGAAGCAGCTATCCCGCCGCGGCTCGAGCCCCGCATCACCAACGGCGACACGTAAGTCGCCTCGGCTGCAACGCAGCAGCCTCGCATCATAGGCGACGACACATTCCGCCTCACCTGCAG] [+] EMBL BM606935 [CCGAGAGGAGTGTGTTACAGGCTACCGGTCGAGCAGGGCTCCCGGTAGGGCTCACGGTGCGGCTCGTGCGTGCGGCCCATTACAAGTTTTAATTTGTTGTGTTTTGTATTATTTAATTCGTTTAATAAATGTGTAAATGTGCAAAACATAAAAGTGGCGACGAGGATGGGATCCTCTTGCGCAAGGAGGATCCTACAGAACCCGCGGCAGCCATCGCGTTTCGTCTGGCCTTTCTGCAGCGTCAGTGCAGCGGCCATCGCGATGGCACGGTTCCCTGTGCCTTTGGGATACCGCGGAACATCGGGCCGCCGCCACCGCAGACACCGTGGCCCCGGCTGCTGTCCCATCACTGGCGACCGCTGCATTGGGCAGCCGGCTACACACCACCCACTTATTAAGGGCGACTTCACATTCCGCCCCGGCTCGAGCCCTGCAGCACGTCATCGGCGAAGCAGCTATCCCGCCGCGGCTCGAGCCCCGCATCACCAACGGCGACACGTAAGTCGCCTCGGCTGCAACGCAGCAGCCTCGCATCATAGGCGACGACACATTCCGCCTCACCTGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1991#0 GAATCCCGAGGTTNAGCCCGGCTGAGCCCTGCAGCACATATCGGTGTAGCAGCAATCCCG 60 consensus_1991#1 ------------------------------------------------------------ consensus_1991#0 CCGCAGCTCGAGCCCCGCATCACCAACAGCAACGCGCAAGTTGCTTCGGCTGCCGCACCT 120 consensus_1991#1 ------------------------------------------------------------ consensus_1991#0 CAGCACATCATCGACGAGGTCGCAATCCCTGCCAAGGCTCTGAGTCCTGCCTCATCATCG 180 consensus_1991#1 ------------------------------------------------------------ consensus_1991#0 GCAACCTGCAGGTTGCTTTGACTGCAGCACGGCAGCATGTCATCTGGCGAGGTCGCATTC 240 consensus_1991#1 ------------------------------------------------------------ consensus_1991#0 CCTGCCGCGGCTCGAGCCCCGCATCAACAATGGCGACACTGTAAGTCTGCCTCGGCTGCA 300 consensus_1991#1 ------------------------------------------------------------ consensus_1991#0 ACGCAGCAGCCTCGCATCATAGGCGACGACACATTCTTGCTCACCTTGCAGCAAACCAGC 360 consensus_1991#1 ------------------------------------------------------------ consensus_1991#0 ACGTCAGCCAGAGACGCCATCGCTGTGGCCGGCCATTTGCTGTCGCCGGTCATGGCCTGC 420 consensus_1991#1 ------------------------------------------------------------ consensus_1991#0 CTGGTGCAAGGTTTCATTGCGGACCAACCTCACTCCCTGGCACGGCGTAGACAGCGACTG 480 consensus_1991#1 ------------------------------------------------------------ consensus_1991#0 CTACAACCGAGTGACAGCGAACTGCGGCATCATCGCCGCCGCCCGGGACAACGGTGCACC 540 consensus_1991#1 ------------------------------------------------------------ consensus_1991#0 ATAGCAGACGCTCCCGAGGACAGCGAACGCGGNATCATCGCCGCGCCCGGGGACAACAGG 600 consensus_1991#1 ----------------------------------------------CCGAGAGGAGTGTG 14 *** * * * consensus_1991#0 TCATCATCAACAGTCGCAACTCGCGGAACGCGACGCGGCATCATCGCAAGACCGCCCCGG 660 consensus_1991#1 TTACAGGCTACCG--GTCGAGCAGGGCTCCCGGTAGGGC----TCACGGTGCGGCTC--- 65 * * * ** * * * ** * ** *** ** * * ** * consensus_1991#0 GAACATTGAGCGCAGCAGCATCACGATTNCCCACTAAGTACCATCGGTCGAACGGGTGTC 720 consensus_1991#1 GTGCGTGCGGCCCATTACAAGTTTTAATTTGTTGTGTTTTGTATTATTTAATT---CGTT 122 * * * ** ** * * * * * * ** * * ** consensus_1991#0 ACACAGCTGTATACGTGTGGAATACACCGNGGTCGGTTCGACCTTCGGTATTAAACGGGG 780 consensus_1991#1 TAATAAATGTGTAAATGTGCAAAACATAAAAGTGGCGACGAGGAT-GGGATCCTCTTGCG 181 * * *** ** **** ** *** ** * *** * ** ** * * consensus_1991#0 CAGACTGTCATGTGGATANNAACGTTGCCGAAGCCCNNGCGATT-GCCCGAACAATTACC 839 consensus_1991#1 CAAGG----AGGATCCTACAGAACCCGCGGCAGCCATCGCGTTTCGTCTGGCCTTTCTGC 237 ** * * ** * ** * **** *** ** * * * * * * consensus_1991#0 CTCG-CAGGNNGTNAACNCTCCAGACATTCCACTGCGCCCAANCGCACAAATAC-GCGCA 897 consensus_1991#1 AGCGTCAGTGCAGCGGCCATCGCGATGGCACGGTTCCCTGTGCCTTTGGGATACCGCGGA 297 ** *** * ** ** * * * * * **** *** * consensus_1991#0 CTAACGAGATGCGGGCANAACAGTTTTGACNAAGGGNACCCAAAGGAGNAGTGTNTAAAA 957 consensus_1991#1 ACATCGGGCCGCCGCCACCGCAG-----ACACCGTGGCCCC--GGCTGCTGTCCCATCAC 350 * ** * ** * ** *** ** * * *** * * ** * consensus_1991#0 GGGCAANGGTCACACAAAGGACCCCGCNNAGTTCACAGCGGCGATTTGTCGGGCACCACA 1017 consensus_1991#1 TGGCGACCGCTGCATTGGGCAGCCGGCTA----CACACCACCCACTTATTAAGGGCGAC- 405 *** * * ** * * ** ** **** * * * ** * * * ** consensus_1991#0 CACAAAAATTGGCGTGCATCATTCAGACTATAGNAGTCTAACAACCAAAACAACAAAGGA 1077 consensus_1991#1 TTCACATTCCGCCCCGGCTCGAGC--CCTGCAGCACGTCATCGGC-GAAGCAGCTA---- 458 ** * * * * ** * ** ** * * * * ** ** * * consensus_1991#0 TCCCNCANTNGTTCTCGTGTCTCTCTNNCCNNNNTNTNTCCNNCCTCACGACCCGACNAC 1137 consensus_1991#1 TCCCGCCGCGG--CTCGAGCCCCGCATCACCAACGGCGACACGTAAGTCGCCTCGGCTGC 516 **** * * **** * * * * * * ** * ** * * consensus_1991#0 GA-ANAACTNCNNTTCGACGTAGCNCTANCANACGNNANNAGCCATCGACAACCGANTAG 1196 consensus_1991#1 AACGCAGCAGCCTCGCATCATAG-GCGACGACACATTCCGCCTCACCTGCAG-------- 567 * * * * * * *** * * * ** ** * ** consensus_1991#0 ANTCAAAGACAGTGCATACCGA 1218 consensus_1991#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||