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Anopheles gambiae
cluster # 1992 cluster # 1992       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1992#0 length = 703 sequences # 1  
consensus_1992#1 length = 600 sequences # 1  

consensusID : consensus_1992#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 703
fasta sequence
                              [CCGGGACGAGAGAACGACCCAAGCACGAACAACCTGACTAGAAAGTGGTACACCATTTGCTTGCGCTAGTTACTGGCAATTTTTCACAAAGTGTGGTTCTTGTTTTGTGCATCAATATCGTTTCGATCTAACTGTGTGTTTTTACTTCCGTACGAACGGATTGTTTGTTTGCTAGGGTAGTTAACTTAACCTATGCGTTACCTATGCTTCTTCACTGTTTGCATACAAAGTATGCAACAAAACATTAGCGTGCTAGTAGAGTAATGAATGGTGTATTCAACAAAACCGTAAAAACCAGCCATAAATGTTGTGGTTTTCATTCATTCTATAAAGTGGTTAGTGTAAAATGTGACTTACTGCAAGCGACACCTTTACTGTGGTTGGAGTATGAATAATTAATTGACATCCTGTCGAAAAGTTTGCCGTGTGTAATAGTTCGTGACACACTAATGTCAGTTCGAATGTTTAATCTAAGTTAAATGTTTACGGCTTTGTTTAACCTTCCATTTCCCTCATTATCAATGCTAAAGAATGTTTTTTTTTGTTCGGAGAACTAAGAGAAATCGAAGCACAATATTGATTGAATGAATAACTTTGCTACTATTTTGGGGATTTTACTGCCAGGATCCAGAGGACCGAATTTCCATGCGCGGTATCGCATGAGAAACAAGAGAAAGGAAGAGAGATGAATTGAATGATGCAG]

[+] EMBL BM649703             [CCGGGACGAGAGAACGACCCAAGCACGAACAACCTGACTAGAAAGTGGTACACCATTTGCTTGCGCTAGTTACTGGCAATTTTTCACAAAGTGTGGTTCTTGTTTTGTGCATCAATATCGTTTCGATCTAACTGTGTGTTTTTACTTCCGTACGAACGGATTGTTTGTTTGCTAGGGTAGTTAACTTAACCTATGCGTTACCTATGCTTCTTCACTGTTTGCATACAAAGTATGCAACAAAACATTAGCGTGCTAGTAGAGTAATGAATGGTGTATTCAACAAAACCGTAAAAACCAGCCATAAATGTTGTGGTTTTCATTCATTCTATAAAGTGGTTAGTGTAAAATGTGACTTACTGCAAGCGACACCTTTACTGTGGTTGGAGTATGAATAATTAATTGACATCCTGTCGAAAAGTTTGCCGTGTGTAATAGTTCGTGACACACTAATGTCAGTTCGAATGTTTAATCTAAGTTAAATGTTTACGGCTTTGTTTAACCTTCCATTTCCCTCATTATCAATGCTAAAGAATGTTTTTTTTTGTTCGGAGAACTAAGAGAAATCGAAGCACAATATTGATTGAATGAATAACTTTGCTACTATTTTGGGGATTTTACTGCCAGGATCCAGAGGACCGAATTTCCATGCGCGGTATCGCATGAGAAACAAGAGAAAGGAAGAGAGATGAATTGAATGATGCAG]


>consensus_1992#0 CCGGGACGAGAGAACGACCCAAGCACGAACAACCTGACTAGAAAGTGGTACACCATTTGC TTGCGCTAGTTACTGGCAATTTTTCACAAAGTGTGGTTCTTGTTTTGTGCATCAATATCG TTTCGATCTAACTGTGTGTTTTTACTTCCGTACGAACGGATTGTTTGTTTGCTAGGGTAG TTAACTTAACCTATGCGTTACCTATGCTTCTTCACTGTTTGCATACAAAGTATGCAACAA AACATTAGCGTGCTAGTAGAGTAATGAATGGTGTATTCAACAAAACCGTAAAAACCAGCC ATAAATGTTGTGGTTTTCATTCATTCTATAAAGTGGTTAGTGTAAAATGTGACTTACTGC AAGCGACACCTTTACTGTGGTTGGAGTATGAATAATTAATTGACATCCTGTCGAAAAGTT TGCCGTGTGTAATAGTTCGTGACACACTAATGTCAGTTCGAATGTTTAATCTAAGTTAAA TGTTTACGGCTTTGTTTAACCTTCCATTTCCCTCATTATCAATGCTAAAGAATGTTTTTT TTTGTTCGGAGAACTAAGAGAAATCGAAGCACAATATTGATTGAATGAATAACTTTGCTA CTATTTTGGGGATTTTACTGCCAGGATCCAGAGGACCGAATTTCCATGCGCGGTATCGCA TGAGAAACAAGAGAAAGGAAGAGAGATGAATTGAATGATGCAG



consensusID : consensus_1992#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 600
fasta sequence
                              [CCGCTTGTTTTGTGCATCAATATCGTTTCGATCTAACTGTGTGTTTTTACTTCCGTACGAACGGATTGTTTGTTTGCTAGGGTAGTTAACTTAACCTATGCGTTACCTATGCTTCTTCACTGTTTGCATACAAAGTATGCAACAAAACATTAGCGTGCTAGTAGAGTAATGAATGGTGTATTCAACAAAACCGTAAAAACCAGCCATAAATGTTGTGGTTTTCATTCATTCTATAAAGTGGTTAGTGTAAAATGTGACTTACTGCAAGCGACACCTTTACTGTGGTTGGAGTATGAATAATTAATTGACATCCTGTCGAAAAGTTTGCCGTGTGTAATAGTTCGTGACACACTAATGATCCAGAGGACCGAATTTCCATGCGCGGTATCGCATGAGAAACAAGAGAAAGGAAGAGAGATGAATTGAATGATGCAGAGTAAAGTGATTTTTACAAGCTTCCTAACAACATTGGGTACGAGAGTACGAGTGATGGTGGTGTAAAAGAGTCAACAGCACGTTTTCAATTCTAACTATGTACAGCTAGCTGCCGCTTTGAGGCGGAGAATCAATCTACACCGTGGGAGCGTTTTCATTAGAAGC]

[+] EMBL BM635381             [CCGCTTGTTTTGTGCATCAATATCGTTTCGATCTAACTGTGTGTTTTTACTTCCGTACGAACGGATTGTTTGTTTGCTAGGGTAGTTAACTTAACCTATGCGTTACCTATGCTTCTTCACTGTTTGCATACAAAGTATGCAACAAAACATTAGCGTGCTAGTAGAGTAATGAATGGTGTATTCAACAAAACCGTAAAAACCAGCCATAAATGTTGTGGTTTTCATTCATTCTATAAAGTGGTTAGTGTAAAATGTGACTTACTGCAAGCGACACCTTTACTGTGGTTGGAGTATGAATAATTAATTGACATCCTGTCGAAAAGTTTGCCGTGTGTAATAGTTCGTGACACACTAATGATCCAGAGGACCGAATTTCCATGCGCGGTATCGCATGAGAAACAAGAGAAAGGAAGAGAGATGAATTGAATGATGCAGAGTAAAGTGATTTTTACAAGCTTCCTAACAACATTGGGTACGAGAGTACGAGTGATGGTGGTGTAAAAGAGTCAACAGCACGTTTTCAATTCTAACTATGTACAGCTAGCTGCCGCTTTGAGGCGGAGAATCAATCTACACCGTGGGAGCGTTTTCATTAGAAGC]


>consensus_1992#1 CCGCTTGTTTTGTGCATCAATATCGTTTCGATCTAACTGTGTGTTTTTACTTCCGTACGA ACGGATTGTTTGTTTGCTAGGGTAGTTAACTTAACCTATGCGTTACCTATGCTTCTTCAC TGTTTGCATACAAAGTATGCAACAAAACATTAGCGTGCTAGTAGAGTAATGAATGGTGTA TTCAACAAAACCGTAAAAACCAGCCATAAATGTTGTGGTTTTCATTCATTCTATAAAGTG GTTAGTGTAAAATGTGACTTACTGCAAGCGACACCTTTACTGTGGTTGGAGTATGAATAA TTAATTGACATCCTGTCGAAAAGTTTGCCGTGTGTAATAGTTCGTGACACACTAATGATC CAGAGGACCGAATTTCCATGCGCGGTATCGCATGAGAAACAAGAGAAAGGAAGAGAGATG AATTGAATGATGCAGAGTAAAGTGATTTTTACAAGCTTCCTAACAACATTGGGTACGAGA GTACGAGTGATGGTGGTGTAAAAGAGTCAACAGCACGTTTTCAATTCTAACTATGTACAG CTAGCTGCCGCTTTGAGGCGGAGAATCAATCTACACCGTGGGAGCGTTTTCATTAGAAGC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1992#0      CCGGGACGAGAGAACGACCCAAGCACGAACAACCTGACTAGAAAGTGGTACACCATTTGC 60
consensus_1992#1      ------------------------------------------------------------
                                                                                  

consensus_1992#0      TTGCGCTAGTTACTGGCAATTTTTCACAAAGTGTGGTTCTTGTTTTGTGCATCAATATCG 120
consensus_1992#1      -----------------------------------CCGCTTGTTTTGTGCATCAATATCG 25
                                                            **********************

consensus_1992#0      TTTCGATCTAACTGTGTGTTTTTACTTCCGTACGAACGGATTGTTTGTTTGCTAGGGTAG 180
consensus_1992#1      TTTCGATCTAACTGTGTGTTTTTACTTCCGTACGAACGGATTGTTTGTTTGCTAGGGTAG 85
                      ************************************************************

consensus_1992#0      TTAACTTAACCTATGCGTTACCTATGCTTCTTCACTGTTTGCATACAAAGTATGCAACAA 240
consensus_1992#1      TTAACTTAACCTATGCGTTACCTATGCTTCTTCACTGTTTGCATACAAAGTATGCAACAA 145
                      ************************************************************

consensus_1992#0      AACATTAGCGTGCTAGTAGAGTAATGAATGGTGTATTCAACAAAACCGTAAAAACCAGCC 300
consensus_1992#1      AACATTAGCGTGCTAGTAGAGTAATGAATGGTGTATTCAACAAAACCGTAAAAACCAGCC 205
                      ************************************************************

consensus_1992#0      ATAAATGTTGTGGTTTTCATTCATTCTATAAAGTGGTTAGTGTAAAATGTGACTTACTGC 360
consensus_1992#1      ATAAATGTTGTGGTTTTCATTCATTCTATAAAGTGGTTAGTGTAAAATGTGACTTACTGC 265
                      ************************************************************

consensus_1992#0      AAGCGACACCTTTACTGTGGTTGGAGTATGAATAATTAATTGACATCCTGTCGAAAAGTT 420
consensus_1992#1      AAGCGACACCTTTACTGTGGTTGGAGTATGAATAATTAATTGACATCCTGTCGAAAAGTT 325
                      ************************************************************

consensus_1992#0      TGCCGTGTGTAATAGTTCGTGACACACTAATGTC-----AGTTCGAATGTTTAATCTAAG 475
consensus_1992#1      TGCCGTGTGTAATAGTTCGTGACACACTAATGATCCAGAGGACCGAATTTCCATGCGCGG 385
                      ********************************        *  ***** *  *  *   *

consensus_1992#0      TTAAATGTTTACGGCTTTGTTTAACCTTCCATTTCCCTC--ATTATCAATGCTAAAGAAT 533
consensus_1992#1      TATCGCATGAGAAACAAGAGAAAGGAAGAGAGATGAATTGAATGATGCAGAGTAAAGTGA 445
                      *      *      *       *       *  *   *   ** **  *   *****   

consensus_1992#0      GTTTTTTTTTGTTCGGAGAACTAAGAGAAATCGAAGCACAA-TATTGATTGAATGAATAA 592
consensus_1992#1      TTTTTACAAGCTTCCTAACAACATTGGGTACGAGAGTACGAGTGATGGTGGTGTAAAAGA 505
                       ****      ***  *  *  *   *  *    ** ** * *  ** * *  * **  *

consensus_1992#0      CTTTGCTACTATTTTGGGGATTTTACTGCCAGGATCCAGAGGACCGAATTTCCATGCGCG 652
consensus_1992#1      GTCAACAGCACGTTTTCAATTCTAACTATGTACAGCTAGCTGCC---GCTTTGAGGCGGA 562
                       *   *  *   ***     * * ***      * * **  * *     **  * ***  

consensus_1992#0      GTATCGCATGAGAAACAAGAGAAAGGAAGAGAGATGAATTGAATGATGCAG 703
consensus_1992#1      GAATC-------AATCTACACCGTGGGAGCGTTTTCATTAGAAGC------ 600
                      * ***       ** * * *    ** ** *   * * * ***        




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)