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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1992#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence
[CCGGGACGAGAGAACGACCCAAGCACGAACAACCTGACTAGAAAGTGGTACACCATTTGCTTGCGCTAGTTACTGGCAATTTTTCACAAAGTGTGGTTCTTGTTTTGTGCATCAATATCGTTTCGATCTAACTGTGTGTTTTTACTTCCGTACGAACGGATTGTTTGTTTGCTAGGGTAGTTAACTTAACCTATGCGTTACCTATGCTTCTTCACTGTTTGCATACAAAGTATGCAACAAAACATTAGCGTGCTAGTAGAGTAATGAATGGTGTATTCAACAAAACCGTAAAAACCAGCCATAAATGTTGTGGTTTTCATTCATTCTATAAAGTGGTTAGTGTAAAATGTGACTTACTGCAAGCGACACCTTTACTGTGGTTGGAGTATGAATAATTAATTGACATCCTGTCGAAAAGTTTGCCGTGTGTAATAGTTCGTGACACACTAATGTCAGTTCGAATGTTTAATCTAAGTTAAATGTTTACGGCTTTGTTTAACCTTCCATTTCCCTCATTATCAATGCTAAAGAATGTTTTTTTTTGTTCGGAGAACTAAGAGAAATCGAAGCACAATATTGATTGAATGAATAACTTTGCTACTATTTTGGGGATTTTACTGCCAGGATCCAGAGGACCGAATTTCCATGCGCGGTATCGCATGAGAAACAAGAGAAAGGAAGAGAGATGAATTGAATGATGCAG]
[+] EMBL BM649703 [CCGGGACGAGAGAACGACCCAAGCACGAACAACCTGACTAGAAAGTGGTACACCATTTGCTTGCGCTAGTTACTGGCAATTTTTCACAAAGTGTGGTTCTTGTTTTGTGCATCAATATCGTTTCGATCTAACTGTGTGTTTTTACTTCCGTACGAACGGATTGTTTGTTTGCTAGGGTAGTTAACTTAACCTATGCGTTACCTATGCTTCTTCACTGTTTGCATACAAAGTATGCAACAAAACATTAGCGTGCTAGTAGAGTAATGAATGGTGTATTCAACAAAACCGTAAAAACCAGCCATAAATGTTGTGGTTTTCATTCATTCTATAAAGTGGTTAGTGTAAAATGTGACTTACTGCAAGCGACACCTTTACTGTGGTTGGAGTATGAATAATTAATTGACATCCTGTCGAAAAGTTTGCCGTGTGTAATAGTTCGTGACACACTAATGTCAGTTCGAATGTTTAATCTAAGTTAAATGTTTACGGCTTTGTTTAACCTTCCATTTCCCTCATTATCAATGCTAAAGAATGTTTTTTTTTGTTCGGAGAACTAAGAGAAATCGAAGCACAATATTGATTGAATGAATAACTTTGCTACTATTTTGGGGATTTTACTGCCAGGATCCAGAGGACCGAATTTCCATGCGCGGTATCGCATGAGAAACAAGAGAAAGGAAGAGAGATGAATTGAATGATGCAG]
consensusID : consensus_1992#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 600 fasta sequence
[CCGCTTGTTTTGTGCATCAATATCGTTTCGATCTAACTGTGTGTTTTTACTTCCGTACGAACGGATTGTTTGTTTGCTAGGGTAGTTAACTTAACCTATGCGTTACCTATGCTTCTTCACTGTTTGCATACAAAGTATGCAACAAAACATTAGCGTGCTAGTAGAGTAATGAATGGTGTATTCAACAAAACCGTAAAAACCAGCCATAAATGTTGTGGTTTTCATTCATTCTATAAAGTGGTTAGTGTAAAATGTGACTTACTGCAAGCGACACCTTTACTGTGGTTGGAGTATGAATAATTAATTGACATCCTGTCGAAAAGTTTGCCGTGTGTAATAGTTCGTGACACACTAATGATCCAGAGGACCGAATTTCCATGCGCGGTATCGCATGAGAAACAAGAGAAAGGAAGAGAGATGAATTGAATGATGCAGAGTAAAGTGATTTTTACAAGCTTCCTAACAACATTGGGTACGAGAGTACGAGTGATGGTGGTGTAAAAGAGTCAACAGCACGTTTTCAATTCTAACTATGTACAGCTAGCTGCCGCTTTGAGGCGGAGAATCAATCTACACCGTGGGAGCGTTTTCATTAGAAGC]
[+] EMBL BM635381 [CCGCTTGTTTTGTGCATCAATATCGTTTCGATCTAACTGTGTGTTTTTACTTCCGTACGAACGGATTGTTTGTTTGCTAGGGTAGTTAACTTAACCTATGCGTTACCTATGCTTCTTCACTGTTTGCATACAAAGTATGCAACAAAACATTAGCGTGCTAGTAGAGTAATGAATGGTGTATTCAACAAAACCGTAAAAACCAGCCATAAATGTTGTGGTTTTCATTCATTCTATAAAGTGGTTAGTGTAAAATGTGACTTACTGCAAGCGACACCTTTACTGTGGTTGGAGTATGAATAATTAATTGACATCCTGTCGAAAAGTTTGCCGTGTGTAATAGTTCGTGACACACTAATGATCCAGAGGACCGAATTTCCATGCGCGGTATCGCATGAGAAACAAGAGAAAGGAAGAGAGATGAATTGAATGATGCAGAGTAAAGTGATTTTTACAAGCTTCCTAACAACATTGGGTACGAGAGTACGAGTGATGGTGGTGTAAAAGAGTCAACAGCACGTTTTCAATTCTAACTATGTACAGCTAGCTGCCGCTTTGAGGCGGAGAATCAATCTACACCGTGGGAGCGTTTTCATTAGAAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1992#0 CCGGGACGAGAGAACGACCCAAGCACGAACAACCTGACTAGAAAGTGGTACACCATTTGC 60
consensus_1992#1 ------------------------------------------------------------
consensus_1992#0 TTGCGCTAGTTACTGGCAATTTTTCACAAAGTGTGGTTCTTGTTTTGTGCATCAATATCG 120
consensus_1992#1 -----------------------------------CCGCTTGTTTTGTGCATCAATATCG 25
**********************
consensus_1992#0 TTTCGATCTAACTGTGTGTTTTTACTTCCGTACGAACGGATTGTTTGTTTGCTAGGGTAG 180
consensus_1992#1 TTTCGATCTAACTGTGTGTTTTTACTTCCGTACGAACGGATTGTTTGTTTGCTAGGGTAG 85
************************************************************
consensus_1992#0 TTAACTTAACCTATGCGTTACCTATGCTTCTTCACTGTTTGCATACAAAGTATGCAACAA 240
consensus_1992#1 TTAACTTAACCTATGCGTTACCTATGCTTCTTCACTGTTTGCATACAAAGTATGCAACAA 145
************************************************************
consensus_1992#0 AACATTAGCGTGCTAGTAGAGTAATGAATGGTGTATTCAACAAAACCGTAAAAACCAGCC 300
consensus_1992#1 AACATTAGCGTGCTAGTAGAGTAATGAATGGTGTATTCAACAAAACCGTAAAAACCAGCC 205
************************************************************
consensus_1992#0 ATAAATGTTGTGGTTTTCATTCATTCTATAAAGTGGTTAGTGTAAAATGTGACTTACTGC 360
consensus_1992#1 ATAAATGTTGTGGTTTTCATTCATTCTATAAAGTGGTTAGTGTAAAATGTGACTTACTGC 265
************************************************************
consensus_1992#0 AAGCGACACCTTTACTGTGGTTGGAGTATGAATAATTAATTGACATCCTGTCGAAAAGTT 420
consensus_1992#1 AAGCGACACCTTTACTGTGGTTGGAGTATGAATAATTAATTGACATCCTGTCGAAAAGTT 325
************************************************************
consensus_1992#0 TGCCGTGTGTAATAGTTCGTGACACACTAATGTC-----AGTTCGAATGTTTAATCTAAG 475
consensus_1992#1 TGCCGTGTGTAATAGTTCGTGACACACTAATGATCCAGAGGACCGAATTTCCATGCGCGG 385
******************************** * ***** * * * *
consensus_1992#0 TTAAATGTTTACGGCTTTGTTTAACCTTCCATTTCCCTC--ATTATCAATGCTAAAGAAT 533
consensus_1992#1 TATCGCATGAGAAACAAGAGAAAGGAAGAGAGATGAATTGAATGATGCAGAGTAAAGTGA 445
* * * * * * * ** ** * *****
consensus_1992#0 GTTTTTTTTTGTTCGGAGAACTAAGAGAAATCGAAGCACAA-TATTGATTGAATGAATAA 592
consensus_1992#1 TTTTTACAAGCTTCCTAACAACATTGGGTACGAGAGTACGAGTGATGGTGGTGTAAAAGA 505
**** *** * * * * * ** ** * * ** * * * ** *
consensus_1992#0 CTTTGCTACTATTTTGGGGATTTTACTGCCAGGATCCAGAGGACCGAATTTCCATGCGCG 652
consensus_1992#1 GTCAACAGCACGTTTTCAATTCTAACTATGTACAGCTAGCTGCC---GCTTTGAGGCGGA 562
* * * *** * * *** * * ** * * ** * ***
consensus_1992#0 GTATCGCATGAGAAACAAGAGAAAGGAAGAGAGATGAATTGAATGATGCAG 703
consensus_1992#1 GAATC-------AATCTACACCGTGGGAGCGTTTTCATTAGAAGC------ 600
* *** ** * * * ** ** * * * * ***
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||