These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence [CCGCGTTTCACGAACGATGTGATAGCGTCGTGTGCTTTTGGAGTGCGCATCAACTCGTTTCGAGACAAGGAAAACGTGTTCTACCGTTACGGCAAGGACATCACGAATTTTGGCCGGCTAAAAGTATTTCTCAAGATGATGGGATACCAGCTGATCCCGAAACTGATGGCATGGCTAGAGATTGATATTTTCGATCGCGAACACGTACAATTTTTCATAGACCTGTTCAGACAGTCGGTACAGGAACGTGAGCAACATGGCATTGTTCGTCCGGACATGATCCATCTGCTGATGCAAGCTAATAATGGTAAGCTGCGATATCAACCAACAGATCACGAGGAAGTGGAAGGCTTTGCAACGGCAAAGGAATCCAATGATGAGAAGGTTGTCCCAGAAGATATGGTAAAGCTCAGCGAGAATGAAATGGTAGCTCAGTGCCTGATATTCTTCCTAGCTGGCTTTGATATAATCGCATCTGTCATGACCTTTCTTCTGTATGAGGTAGCTCTAGATCCCGAAATCCAGCAGCGTTTGTACGAGGAGATTCAACAAGTGTCAGAATCACTAGATGGAAAGTCAATCACATATGATGCTTTGCAAAATATGCGTTATCTGGACATGGTTGTATCCGAAACGCTGCGAAAGTGGC] [+] EMBL BM627860 [CCGCGTTTCACGAACGATGTGATAGCGTCGTGTGCTTTTGGAGTGCGCATCAACTCGTTTCGAGACAAGGAAAACGTGTTCTACCGTTACGGCAAGGACATCACGAATTTTGGCCGGCTAAAAGTATTTCTCAAGATGATGGGATACCAGCTGATCCCGAAACTGATGGCATGGCTAGAGATTGATATTTTCGATCGCGAACACGTACAATTTTTCATAGACCTGTTCAGACAGTCGGTACAGGAACGTGAGCAACATGGCATTGTTCGTCCGGACATGATCCATCTGCTGATGCAAGCTAATAATGGTAAGCTGCGATATCAACCAACAGATCACGAGGAAGTGGAAGGCTTTGCAACGGCAAAGGAATCCAATGATGAGAAGGTTGTCCCAGAAGATATGGTAAAGCTCAGCGAGAATGAAATGGTAGCTCAGTGCCTGATATTCTTCCTAGCTGGCTTTGATATAATCGCATCTGTCATGACCTTTCTTCTGTATGAGGTAGCTCTAGATCCCGAAATCCAGCAGCGTTTGTACGAGGAGATTCAACAAGTGTCAGAATCACTAGATGGAAAGTCAATCACATATGATGCTTTGCAAAATATGCGTTATCTGGACATGGTTGTATCCGAAACGCTGCGAAAGTGGC] consensusID : consensus_2#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence [CAGAATCNCCCGAGGTAACTGTTCAGACAGTCGGTACAGGAACGTGAGCAACATGGCATTGTTCGTCCGGACATGATCCATCTGCTGATGCAAGCTAATAATGGTAAGCTGCGATATCAACCAACAGATCACGAGGAAGTGGAAGGCTTTGCAACGGCAAAGGAATCCAATGATGAGAAGGTTGTCCCAGAAGATATGGTAAAGCTCAGCGAGAATGAAATGGTAGCTCAGTGCCTGATATTCTTCCTAGCTGGCTTTGATATAATCGCATCTGTCATGACCTTTCTTCTGTATGAGGTAGCTCTAGATCCCGAAATCCAGCAGCGTTTGTACGAGGAGATTCAACAAGTGTCAGAATCACTAGATGGAAAGTCAATCACATATGATGCTTTGCAAAATATGCGTTATCTGGACATGGTTGTATCCGAAACGCTGCGAAAGTGGCCATCACAACCTGCTACTGATCGACTGTGTAATCAAGATTACAAGGTGACTGATGTGACTCCGAATGTTGACATTATTATACCAAAGGGGTGCATCGTGTCCATCCCCATTGCCGGTTTGCATTATGATCCTGCCATTTACCCCGATCCAACCGCTTCGATCCAGAGCGCTTCAACGATGAGAATAAGCATAAGAT] [+] EMBL AL931964 [CAGAATCNCCCGAGGTAACTGTTCAGACAGTCGGTACAGGAACGTGAGCAACATGGCATTGTTCGTCCGGACATGATCCATCTGCTGATGCAAGCTAATAATGGTAAGCTGCGATATCAACCAACAGATCACGAGGAAGTGGAAGGCTTTGCAACGGCAAAGGAATCCAATGATGAGAAGGTTGTCCCAGAAGATATGGTAAAGCTCAGCGAGAATGAAATGGTAGCTCAGTGCCTGATATTCTTCCTAGCTGGCTTTGATATAATCGCATCTGTCATGACCTTTCTTCTGTATGAGGTAGCTCTAGATCCCGAAATCCAGCAGCGTTTGTACGAGGAGATTCAACAAGTGTCAGAATCACTAGATGGAAAGTCAATCACATATGATGCTTTGCAAAATATGCGTTATCTGGACATGGTTGTATCCGAAACGCTGCGAAAGTGGCCATCACAACCTGCTACTGATCGACTGTGTAATCAAGATTACAAGGTGACTGATGTGACTCCGAATGTTGACATTATTATACCAAAGGGGTGCATCGTGTCCATCCCCATTGCCGGTTTGCATTATGATCCTGCCATTTACCCCGATCCAACCGCTTCGATCCAGAGCGCTTCAACGATGAGAATAAGCATAAGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2#0 CCGCGTTTCACGAACGATGTGATAGCGTCGTGTGCTTTTGGAGTGCGCATCAACTCGTTT 60 consensus_2#1 ------------------------------------------------------------ consensus_2#0 CGAGACAAGGAAAACGTGTTCTACCGTTACGGCAAGGACATCACGAATTTTGGCCGGCTA 120 consensus_2#1 ------------------------------------------------------------ consensus_2#0 AAAGTATTTCTCAAGATGATGGGATACCAGCTGATCCCGAAACTGATGGCATGGCTAGAG 180 consensus_2#1 ------------------------------------------------------------ consensus_2#0 ATTGATATTTTCGATCGCGAACACGTACAATTTTTCATAG-ACCTGTTCAGACAGTCGGT 239 consensus_2#1 -------------------------CAGAATCNCCCGAGGTAACTGTTCAGACAGTCGGT 35 * *** * * * ***************** consensus_2#0 ACAGGAACGTGAGCAACATGGCATTGTTCGTCCGGACATGATCCATCTGCTGATGCAAGC 299 consensus_2#1 ACAGGAACGTGAGCAACATGGCATTGTTCGTCCGGACATGATCCATCTGCTGATGCAAGC 95 ************************************************************ consensus_2#0 TAATAATGGTAAGCTGCGATATCAACCAACAGATCACGAGGAAGTGGAAGGCTTTGCAAC 359 consensus_2#1 TAATAATGGTAAGCTGCGATATCAACCAACAGATCACGAGGAAGTGGAAGGCTTTGCAAC 155 ************************************************************ consensus_2#0 GGCAAAGGAATCCAATGATGAGAAGGTTGTCCCAGAAGATATGGTAAAGCTCAGCGAGAA 419 consensus_2#1 GGCAAAGGAATCCAATGATGAGAAGGTTGTCCCAGAAGATATGGTAAAGCTCAGCGAGAA 215 ************************************************************ consensus_2#0 TGAAATGGTAGCTCAGTGCCTGATATTCTTCCTAGCTGGCTTTGATATAATCGCATCTGT 479 consensus_2#1 TGAAATGGTAGCTCAGTGCCTGATATTCTTCCTAGCTGGCTTTGATATAATCGCATCTGT 275 ************************************************************ consensus_2#0 CATGACCTTTCTTCTGTATGAGGTAGCTCTAGATCCCGAAATCCAGCAGCGTTTGTACGA 539 consensus_2#1 CATGACCTTTCTTCTGTATGAGGTAGCTCTAGATCCCGAAATCCAGCAGCGTTTGTACGA 335 ************************************************************ consensus_2#0 GGAGATTCAACAAGTGTCAGAATCACTAGATGGAAAGTCAATCACATATGATGCTTTGCA 599 consensus_2#1 GGAGATTCAACAAGTGTCAGAATCACTAGATGGAAAGTCAATCACATATGATGCTTTGCA 395 ************************************************************ consensus_2#0 AAATATGCGTTATCTGGACATGGTTGTATCCGAAACGCTGCGAAAGTGGC---------- 649 consensus_2#1 AAATATGCGTTATCTGGACATGGTTGTATCCGAAACGCTGCGAAAGTGGCCATCACAACC 455 ************************************************** consensus_2#0 ------------------------------------------------------------ consensus_2#1 TGCTACTGATCGACTGTGTAATCAAGATTACAAGGTGACTGATGTGACTCCGAATGTTGA 515 consensus_2#0 ------------------------------------------------------------ consensus_2#1 CATTATTATACCAAAGGGGTGCATCGTGTCCATCCCCATTGCCGGTTTGCATTATGATCC 575 consensus_2#0 ------------------------------------------------------------ consensus_2#1 TGCCATTTACCCCGATCCAACCGCTTCGATCCAGAGCGCTTCAACGATGAGAATAAGCAT 635 consensus_2#0 ----- consensus_2#1 AAGAT 640 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||