These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2012#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 661 fasta sequence [CCGCTCCCTGCAGCCGAAGAGAAAAATCCACACCTCCTGCCGGGAGCACTGCTGCCGGAAGAAGAAGTTCAACCGCTCGATCGATCCGGCCGCGCTCGAGAATGTGGTAGCACCGGCGCTTGGGCCGGTCCGGCGCTACAACACGGTGGCGACTCCCGCCGCGGTTCATCGGTCACCGATGGGATCGCTGTCATTATCTGCCAGGAAAGGGATGCAGCCGTCGGAAGCGGCATCGTTTCGGTTGCGGACGACTGGTTCACCTTCACCCGCGAGCGTTCGTGACCATCGTGACCGACCGGCAGCAGCAGCAGCAGCAGCAGCACCAGCACCATCGTCATGCAACAGCGATGGGATCGATCAGCAAAATTCAATTGCCAGCAATCGAGCACCGTGGCTGTTCCGGGTCGGTTTAATTGAAACGAAGCATCCCGTCTGCGTTGGCACTTTAATCCATCCGAGTTTAATATTAACAACTGCAGTGTGTGTTATAAACAAGCAACCGGAAGAGCTGATCGTCTGGAGCGAGCGTGCACCGGAGCGGCCCGAGGAAGCGACGCGGTGGCCCGTGGGCAGGATACTGTTGCCGGAGAAATTTGCCACCACTTTCGAGCGGCTCGAGAACAATGTTGCTTTACTGTTGCTGCTCGAGCCACCGCCGAGC] [+] EMBL BM602154 [CCGCTCCCTGCAGCCGAAGAGAAAAATCCACACCTCCTGCCGGGAGCACTGCTGCCGGAAGAAGAAGTTCAACCGCTCGATCGATCCGGCCGCGCTCGAGAATGTGGTAGCACCGGCGCTTGGGCCGGTCCGGCGCTACAACACGGTGGCGACTCCCGCCGCGGTTCATCGGTCACCGATGGGATCGCTGTCATTATCTGCCAGGAAAGGGATGCAGCCGTCGGAAGCGGCATCGTTTCGGTTGCGGACGACTGGTTCACCTTCACCCGCGAGCGTTCGTGACCATCGTGACCGACCGGCAGCAGCAGCAGCAGCAGCAGCACCAGCACCATCGTCATGCAACAGCGATGGGATCGATCAGCAAAATTCAATTGCCAGCAATCGAGCACCGTGGCTGTTCCGGGTCGGTTTAATTGAAACGAAGCATCCCGTCTGCGTTGGCACTTTAATCCATCCGAGTTTAATATTAACAACTGCAGTGTGTGTTATAAACAAGCAACCGGAAGAGCTGATCGTCTGGAGCGAGCGTGCACCGGAGCGGCCCGAGGAAGCGACGCGGTGGCCCGTGGGCAGGATACTGTTGCCGGAGAAATTTGCCACCACTTTCGAGCGGCTCGAGAACAATGTTGCTTTACTGTTGCTGCTCGAGCCACCGCCGAGC] consensusID : consensus_2012#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 516 fasta sequence [CTGAACGTGACCACGAAGCACTGCGACTGTGAGGCTTACTCGTGTAAGGACCTGCTGGCCAGCTCCAGCCCGTCCCCGCTCAACTCCCTGCAGCCGAAGAGAAAAATCCACACCTCCTGCCGGGAGCACTGCTGCCGGAAGAAGAAGTTCAACCGCTCGATCGATCCGGCCGCGCTCGAGAATGTGGTAGCACCGGCGCTTGGGCCGGTCCGGCGCTACAACACGGTGGCGACTCCCGCCGCGGTTCATCGGTCACCGATGGGATCGCTGTCATTATCTGCCAGGAAAGGGATGCAGCCGTCGGAAGCGGCATCGTTTCGGTTGCGGACGACTGGTTCACCTTCACCCGCGAGCGTTCGTGACCATCGTGACCGACCGGCAGCAGCAGCAGCAGCACCATCGTCATGCAACAGCGATGGGATCGATCAGCAAAATTCAATTGCCAGCAATCGAGCACCGTGGCTGTTCCGGGTCGGTTTAATTGAAACGAAGCATCCCGTCTGTGTTGGCGCTTTA] [+] EMBL BX603872 [CTGAACGTGACCACGAAGCACTGCGACTGTGAGGCTTACTCGTGTAAGGACCTGCTGGCCAGCTCCAGCCCGTCCCCGCTCAACTCCCTGCAGCCGAAGAGAAAAATCCACACCTCCTGCCGGGAGCACTGCTGCCGGAAGAAGAAGTTCAACCGCTCGATCGATCCGGCCGCGCTCGAGAATGTGGTAGCACCGGCGCTTGGGCCGGTCCGGCGCTACAACACGGTGGCGACTCCCGCCGCGGTTCATCGGTCACCGATGGGATCGCTGTCATTATCTGCCAGGAAAGGGATGCAGCCGTCGGAAGCGGCATCGTTTCGGTTGCGGACGACTGGTTCACCTTCACCCGCGAGCGTTCGTGACCATCGTGACCGACCGGCAGCAGCAGCAGCAGCACCATCGTCATGCAACAGCGATGGGATCGATCAGCAAAATTCAATTGCCAGCAATCGAGCACCGTGGCTGTTCCGGGTCGGTTTAATTGAAACGAAGCATCCCGTCTGTGTTGGCGCTTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2012#0 ------------------------------------------------------------ consensus_2012#1 CTGAACGTGACCACGAAGCACTGCGACTGTGAGGCTTACTCGTGTAAGGACCTGCTGGCC 60 consensus_2012#0 --------------------CCGCTCCCTGCAGCCGAAGAGAAAAATCCACACCTCCTGC 40 consensus_2012#1 AGCTCCAGCCCGTCCCCGCTCAACTCCCTGCAGCCGAAGAGAAAAATCCACACCTCCTGC 120 * ************************************* consensus_2012#0 CGGGAGCACTGCTGCCGGAAGAAGAAGTTCAACCGCTCGATCGATCCGGCCGCGCTCGAG 100 consensus_2012#1 CGGGAGCACTGCTGCCGGAAGAAGAAGTTCAACCGCTCGATCGATCCGGCCGCGCTCGAG 180 ************************************************************ consensus_2012#0 AATGTGGTAGCACCGGCGCTTGGGCCGGTCCGGCGCTACAACACGGTGGCGACTCCCGCC 160 consensus_2012#1 AATGTGGTAGCACCGGCGCTTGGGCCGGTCCGGCGCTACAACACGGTGGCGACTCCCGCC 240 ************************************************************ consensus_2012#0 GCGGTTCATCGGTCACCGATGGGATCGCTGTCATTATCTGCCAGGAAAGGGATGCAGCCG 220 consensus_2012#1 GCGGTTCATCGGTCACCGATGGGATCGCTGTCATTATCTGCCAGGAAAGGGATGCAGCCG 300 ************************************************************ consensus_2012#0 TCGGAAGCGGCATCGTTTCGGTTGCGGACGACTGGTTCACCTTCACCCGCGAGCGTTCGT 280 consensus_2012#1 TCGGAAGCGGCATCGTTTCGGTTGCGGACGACTGGTTCACCTTCACCCGCGAGCGTTCGT 360 ************************************************************ consensus_2012#0 GACCATCGTGACCGACCGGCAGCAGCAGCAGCAGCAGCAGCACCAGCACCATCGTCATGC 340 consensus_2012#1 GACCATCGTGACCGACCGGCAGCAGCAGCAGCAGCA------------CCATCGTCATGC 408 ************************************ ************ consensus_2012#0 AACAGCGATGGGATCGATCAGCAAAATTCAATTGCCAGCAATCGAGCACCGTGGCTGTTC 400 consensus_2012#1 AACAGCGATGGGATCGATCAGCAAAATTCAATTGCCAGCAATCGAGCACCGTGGCTGTTC 468 ************************************************************ consensus_2012#0 CGGGTCGGTTTAATTGAAACGAAGCATCCCGTCTGCGTTGGCACTTTAATCCATCCGAGT 460 consensus_2012#1 CGGGTCGGTTTAATTGAAACGAAGCATCCCGTCTGTGTTGGCGCTTTA------------ 516 *********************************** ****** ***** consensus_2012#0 TTAATATTAACAACTGCAGTGTGTGTTATAAACAAGCAACCGGAAGAGCTGATCGTCTGG 520 consensus_2012#1 ------------------------------------------------------------ consensus_2012#0 AGCGAGCGTGCACCGGAGCGGCCCGAGGAAGCGACGCGGTGGCCCGTGGGCAGGATACTG 580 consensus_2012#1 ------------------------------------------------------------ consensus_2012#0 TTGCCGGAGAAATTTGCCACCACTTTCGAGCGGCTCGAGAACAATGTTGCTTTACTGTTG 640 consensus_2012#1 ------------------------------------------------------------ consensus_2012#0 CTGCTCGAGCCACCGCCGAGC 661 consensus_2012#1 --------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||