cluster # 2015

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Anopheles gambiae
cluster # 2015 cluster # 2015 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2015#0 length = 601 sequences # 1

consensus_2015#1 length = 554 sequences # 1

consensusID : consensus_2015#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 601
fasta sequence

                              [CCGATGTAAACAACGCACCACCAGCAGCACAAGGAAAAGCAGCACAAAACCGTCGAGCATTCCTGTGCGATTGCGGAAAAACGCTTACACCAGCAAAGTGTATGGCCTCACGCGATCGTGGACGCGTGTGTGCATTGTGAAACTGTACGAACGCGCAGTCAGTCTGCTGCCGTAATCCTTCCGCTAAACGTAACACAACAGAGACGAAATCGAGCAGGAAAACGTGTAGTGAGAGAGTCCAGAACCCCCGCCACCATGAAGGACGATATTATCTACCTGGTGCTGCTCGGGTCGTGCATCGGATTTGGCCAGTTTTATCGCAAGTTCACCGACCCCGAGCAGCGGAAGCTCGTGGGCACCGGGGTAGGGCTGCTGGTGGTGCTGTCCGTCAGTGGCTTCCACATGCTGCACATGCTGTTCTGTTATCTCGTGAGTGCACTGCTGATAATCTATGCTAGCCGAAAAGTGTGTCATCTGGCGTGCTTTGGCTTCATGTTCGGCTATCTGTTCTTCTTTCCGGTCGCTGTCGTTCCTGGGGTACGATGCACCGCCCGGCCACACGAACATGATACAGATGATACTGACGCTCAAGCTCGTTTGG]

[+] EMBL BM584753             [CCGATGTAAACAACGCACCACCAGCAGCACAAGGAAAAGCAGCACAAAACCGTCGAGCATTCCTGTGCGATTGCGGAAAAACGCTTACACCAGCAAAGTGTATGGCCTCACGCGATCGTGGACGCGTGTGTGCATTGTGAAACTGTACGAACGCGCAGTCAGTCTGCTGCCGTAATCCTTCCGCTAAACGTAACACAACAGAGACGAAATCGAGCAGGAAAACGTGTAGTGAGAGAGTCCAGAACCCCCGCCACCATGAAGGACGATATTATCTACCTGGTGCTGCTCGGGTCGTGCATCGGATTTGGCCAGTTTTATCGCAAGTTCACCGACCCCGAGCAGCGGAAGCTCGTGGGCACCGGGGTAGGGCTGCTGGTGGTGCTGTCCGTCAGTGGCTTCCACATGCTGCACATGCTGTTCTGTTATCTCGTGAGTGCACTGCTGATAATCTATGCTAGCCGAAAAGTGTGTCATCTGGCGTGCTTTGGCTTCATGTTCGGCTATCTGTTCTTCTTTCCGGTCGCTGTCGTTCCTGGGGTACGATGCACCGCCCGGCCACACGAACATGATACAGATGATACTGACGCTCAAGCTCGTTTGG]




>consensus_2015#0
CCGATGTAAACAACGCACCACCAGCAGCACAAGGAAAAGCAGCACAAAACCGTCGAGCAT
TCCTGTGCGATTGCGGAAAAACGCTTACACCAGCAAAGTGTATGGCCTCACGCGATCGTG
GACGCGTGTGTGCATTGTGAAACTGTACGAACGCGCAGTCAGTCTGCTGCCGTAATCCTT
CCGCTAAACGTAACACAACAGAGACGAAATCGAGCAGGAAAACGTGTAGTGAGAGAGTCC
AGAACCCCCGCCACCATGAAGGACGATATTATCTACCTGGTGCTGCTCGGGTCGTGCATC
GGATTTGGCCAGTTTTATCGCAAGTTCACCGACCCCGAGCAGCGGAAGCTCGTGGGCACC
GGGGTAGGGCTGCTGGTGGTGCTGTCCGTCAGTGGCTTCCACATGCTGCACATGCTGTTC
TGTTATCTCGTGAGTGCACTGCTGATAATCTATGCTAGCCGAAAAGTGTGTCATCTGGCG
TGCTTTGGCTTCATGTTCGGCTATCTGTTCTTCTTTCCGGTCGCTGTCGTTCCTGGGGTA
CGATGCACCGCCCGGCCACACGAACATGATACAGATGATACTGACGCTCAAGCTCGTTTG
G

consensusID : consensus_2015#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 554
fasta sequence

                              [AGAATTCCCCCGAGGTAAAAAGCAGCACAAAACCGTCGAGCATTCCTGTGCGATTGCGGAAAAACGCTTACACCAGCAAAGTGTATGGGCTCACGCGATCGTGGACGCGTATGTGCATTGTGAAACTGTACGAACGCGCAGTCAGTCTGCTGCCGTAATCCTTCCGGGTAAANCGTACGGCACAACTAAGGGGANAAATCTAGCCNGAAACGTGTAATCGACGAAGAAGTTCCCAGAAAGNCCCCGGGGCAAACCATTTAAAAGGGNCCGGACATTCTTTATTCTTAACCGTGGGTTGCTATAGATCAGAGGTCNCCGTGTGCGCATTCCGGCATTTTTGGGGCCAACGAGTACTNGTAATCCGGGAAAAGGTTTTCAACCCAGNAACCCCCAGAAGCCCAAGNCGNGGCAAAGCTTCCGAGGTTGGGGGGNCAACATGGTGCCGTTTGNGCGGAACATGGGCTTGGATTNGGAGATAGGCTTAGGTCCCCAGTTCCAAAGTTGGTGCTTTTCCNACCAATTTGCTTTGGCACAAATTTGCTGGGTTACCTTTG]

[+] EMBL AL695236             [AGAATTCCCCCGAGGTAAAAAGCAGCACAAAACCGTCGAGCATTCCTGTGCGATTGCGGAAAAACGCTTACACCAGCAAAGTGTATGGGCTCACGCGATCGTGGACGCGTATGTGCATTGTGAAACTGTACGAACGCGCAGTCAGTCTGCTGCCGTAATCCTTCCGGGTAAANCGTACGGCACAACTAAGGGGANAAATCTAGCCNGAAACGTGTAATCGACGAAGAAGTTCCCAGAAAGNCCCCGGGGCAAACCATTTAAAAGGGNCCGGACATTCTTTATTCTTAACCGTGGGTTGCTATAGATCAGAGGTCNCCGTGTGCGCATTCCGGCATTTTTGGGGCCAACGAGTACTNGTAATCCGGGAAAAGGTTTTCAACCCAGNAACCCCCAGAAGCCCAAGNCGNGGCAAAGCTTCCGAGGTTGGGGGGNCAACATGGTGCCGTTTGNGCGGAACATGGGCTTGGATTNGGAGATAGGCTTAGGTCCCCAGTTCCAAAGTTGGTGCTTTTCCNACCAATTTGCTTTGGCACAAATTTGCTGGGTTACCTTTG]




>consensus_2015#1
AGAATTCCCCCGAGGTAAAAAGCAGCACAAAACCGTCGAGCATTCCTGTGCGATTGCGGA
AAAACGCTTACACCAGCAAAGTGTATGGGCTCACGCGATCGTGGACGCGTATGTGCATTG
TGAAACTGTACGAACGCGCAGTCAGTCTGCTGCCGTAATCCTTCCGGGTAAANCGTACGG
CACAACTAAGGGGANAAATCTAGCCNGAAACGTGTAATCGACGAAGAAGTTCCCAGAAAG
NCCCCGGGGCAAACCATTTAAAAGGGNCCGGACATTCTTTATTCTTAACCGTGGGTTGCT
ATAGATCAGAGGTCNCCGTGTGCGCATTCCGGCATTTTTGGGGCCAACGAGTACTNGTAA
TCCGGGAAAAGGTTTTCAACCCAGNAACCCCCAGAAGCCCAAGNCGNGGCAAAGCTTCCG
AGGTTGGGGGGNCAACATGGTGCCGTTTGNGCGGAACATGGGCTTGGATTNGGAGATAGG
CTTAGGTCCCCAGTTCCAAAGTTGGTGCTTTTCCNACCAATTTGCTTTGGCACAAATTTG
CTGGGTTACCTTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2015#0      CCGATGTAAACAACGCACCACCAGCAGCACAAGG--AAAAGCAGCACAAAACCGTCGAGC 58
consensus_2015#1      -------------------AGAATTCCCCCGAGGTAAAAAGCAGCACAAAACCGTCGAGC 41
                                         *  *    * * ***  ************************

consensus_2015#0      ATTCCTGTGCGATTGCGGAAAAACGCTTACACCAGCAAAGTGTATGGCCTCACGCGATCG 118
consensus_2015#1      ATTCCTGTGCGATTGCGGAAAAACGCTTACACCAGCAAAGTGTATGGGCTCACGCGATCG 101
                      *********************************************** ************

consensus_2015#0      TGGACGCGTGTGTGCATTGTGAAACTGTACGAACGCGCAGTCAGTCTGCTGCCGTAATCC 178
consensus_2015#1      TGGACGCGTATGTGCATTGTGAAACTGTACGAACGCGCAGTCAGTCTGCTGCCGTAATCC 161
                      ********* **************************************************

consensus_2015#0      TTCCG--CTAAACGTA--ACACAAC--AGAGACGAAATCGAGCAGGAAAACGTGTAGTGA 232
consensus_2015#1      TTCCGGGTAAANCGTACGGCACAACTAAGGGGANAAATCTAGCCNGAAA-CGTGTAATCG 220
                      *****    ** ****   ******  ** *   ***** ***  **** ****** *  

consensus_2015#0      GAGAGTCCAGAACCCCCGCCACCATGAAGGACGATATTATCTACCTGGTGCTGCTCGGGT 292
consensus_2015#1      ACGAA---GAAGTTCCCAGAAAGNCCCCGGGGCAAACCATTTAAAAGGGNCCG-----GA 272
                        **      *   ***   *       **   * *  ** **   **  * *     * 

consensus_2015#0      CGTGCATCGGATTTGGCCA-GTTTTATCGCAAGTTCACCGACCCCGAGCAGCGGAAGCTC 351
consensus_2015#1      CATTCTTTATTCTTAACCGTGGGTTGCTATAGATCAGAGGTCNCCGTGT-GCGCATTCCG 331
                      * * * *     **  **  *  **     *  *     * * *** *  *** *  *  

consensus_2015#0      GTGGGCACCGGGGTAG-GGCTGCTGGTGGTGCTGTCCGTCAGTGGCTTCCACATGCTGCA 410
consensus_2015#1      GCATTTTTGGGGCCAACGAGTACTNGTAAT----CCGGGAAAAGGTTTTCA-ACCCAGNA 386
                      *        ***  *  *  * ** **  *     * *  *  ** ** ** *  * * *

consensus_2015#0      CATGCTGTTCTGTTATCTCGTGAGTGCACTGCTGATAATCTATGCTAGCCGAAAAGTGTG 470
consensus_2015#1      ACCCCCAGAAGCCCAAGNCGNG---GCAAAGCTTCCGAGGTTGGGGGGNCAACATG-GTG 442
                          *         *   ** *   ***  ***    *  *  *   * * * * * ***

consensus_2015#0      TCATCTGG-CGTGCTTTGGCTTCATGTTCGGCTATCTGTTCTTCTTTCCGGTCGCTGTCG 529
consensus_2015#1      CCGTTTGNGCGGAACATGGGCTTGGATTNGGAGATAGGCTTAGGTCCCCAGTT-CCAAAG 501
                       * * **  **     ***  *    ** **  **  * *    *  ** **  *    *

consensus_2015#0      TTCCTGGGGTACGATGCACCGCCCGGCCACACGAACATGATACAGATGATACTGACGCTC 589
consensus_2015#1      TTGGTGCTTTTCCNACCAATTTGCTTTGGCACAAATTTGCTG-GGTTACCTTTG------ 554
                      **  **   * *    **     *     *** **  ** *   * *     **      

consensus_2015#0      AAGCTCGTTTGG 601
consensus_2015#1      ------------