cluster # 2036

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Anopheles gambiae
cluster # 2036 cluster # 2036 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2036#0 length = 629 sequences # 1

consensus_2036#1 length = 565 sequences # 1

consensusID : consensus_2036#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 629
fasta sequence

                              [CCGCGGACGCGTGGGCTCGACGACCGCCAAAATATTAGAAAAGCTTCGGAGCGTATAGCGCGCGGCCCATACACAAACACTACTTCCATATCTTCGTCACCGTATTGGATCATCACAAGTCAAGCGCAGTCAAGAAGAGACACAGCCCTACACGATGACGGTTGATAAAGGTCACACCAATACCGCGTTCGTCGGCGACGAAGCAATCAATGGCAAGAAACCACCGCAGGCGAAAACGATCGATCCCAACATGTACACGCTGGAGATACAGGAGAAGAAACCCGGCCTAGAGACGGAGTACGATCCGTTCCAGCACCGGCTGGTCGAGCATCCAACGACCAACAACGAAACGCTGATTCATCTGCTGAAGGGCTCGCTCGGCACTGGCATTCTCGCCATGCCGAACGCCTTCCACCATGCCGGGTGGACGGTGGGTGTTGTCGGTACGTTGCTGATCGGGCTCCTCTGTACGTACTGCATCCACCTGCTGATCAAGGCGGAGTACGAGCTGTGCAAGCGGAAACGAGTGCCGAGTCTGAACTATCCAGCCGTTACGCAGACGGCCCTGCTGGAGGGTCCGGACGCACTGGAAGCCACTGTCCAAAATCATTATCCACGTGGTGAACGTG]

[+] EMBL BM588751             [CCGCGGACGCGTGGGCTCGACGACCGCCAAAATATTAGAAAAGCTTCGGAGCGTATAGCGCGCGGCCCATACACAAACACTACTTCCATATCTTCGTCACCGTATTGGATCATCACAAGTCAAGCGCAGTCAAGAAGAGACACAGCCCTACACGATGACGGTTGATAAAGGTCACACCAATACCGCGTTCGTCGGCGACGAAGCAATCAATGGCAAGAAACCACCGCAGGCGAAAACGATCGATCCCAACATGTACACGCTGGAGATACAGGAGAAGAAACCCGGCCTAGAGACGGAGTACGATCCGTTCCAGCACCGGCTGGTCGAGCATCCAACGACCAACAACGAAACGCTGATTCATCTGCTGAAGGGCTCGCTCGGCACTGGCATTCTCGCCATGCCGAACGCCTTCCACCATGCCGGGTGGACGGTGGGTGTTGTCGGTACGTTGCTGATCGGGCTCCTCTGTACGTACTGCATCCACCTGCTGATCAAGGCGGAGTACGAGCTGTGCAAGCGGAAACGAGTGCCGAGTCTGAACTATCCAGCCGTTACGCAGACGGCCCTGCTGGAGGGTCCGGACGCACTGGAAGCCACTGTCCAAAATCATTATCCACGTGGTGAACGTG]




>consensus_2036#0
CCGCGGACGCGTGGGCTCGACGACCGCCAAAATATTAGAAAAGCTTCGGAGCGTATAGCG
CGCGGCCCATACACAAACACTACTTCCATATCTTCGTCACCGTATTGGATCATCACAAGT
CAAGCGCAGTCAAGAAGAGACACAGCCCTACACGATGACGGTTGATAAAGGTCACACCAA
TACCGCGTTCGTCGGCGACGAAGCAATCAATGGCAAGAAACCACCGCAGGCGAAAACGAT
CGATCCCAACATGTACACGCTGGAGATACAGGAGAAGAAACCCGGCCTAGAGACGGAGTA
CGATCCGTTCCAGCACCGGCTGGTCGAGCATCCAACGACCAACAACGAAACGCTGATTCA
TCTGCTGAAGGGCTCGCTCGGCACTGGCATTCTCGCCATGCCGAACGCCTTCCACCATGC
CGGGTGGACGGTGGGTGTTGTCGGTACGTTGCTGATCGGGCTCCTCTGTACGTACTGCAT
CCACCTGCTGATCAAGGCGGAGTACGAGCTGTGCAAGCGGAAACGAGTGCCGAGTCTGAA
CTATCCAGCCGTTACGCAGACGGCCCTGCTGGAGGGTCCGGACGCACTGGAAGCCACTGT
CCAAAATCATTATCCACGTGGTGAACGTG

consensusID : consensus_2036#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 565
fasta sequence

                              [CCGGTCTAATATTTTGCTTGCTGCTTGCTACGTTTGGGTCGTAAAATATTAGACGCCTTTCCGGTTGGGGCCCAGTGGAAGGCAAGGGATGGTGCGTGTCTTGTGGTGGTGATAGCAGCGGTACTACATAGTAGCAGCAGCGTTAGCGAGAGGGAGCAGTTTTTTTTCTAATTAGTAGTGCAACATAGACACTCGACGACCGCCAAAATATTAGAAAAGCTTCGGAGCGTATAGCGCGCGGCCCATACACAAACACTACTTCCATATCTTCGTCACCGTATTGGATCATCACAAGTCAAGCGCAGTCAAGAAGAGACACAGCCCTACACGATGACGGTTGATAAAGGCCACACCAATACCGCGTTCGTCGGCGACGAAGCAATCAATGGCAAGAAACCACCGCAGGCGAAAACGATCGATCCCAACATGTACACGCTGGAGATACAGGAGAAGAAACCCGGCCTAGAGACGGAGTACGATCCGTTCCAGCACCGGCTGGTCGAGCATCCAACGACCAACAACGAAACGCTGATTCATCTGCTGAAGGGCTCGCTCGGCACTGGCA]

[+] EMBL BM611411             [CCGGTCTAATATTTTGCTTGCTGCTTGCTACGTTTGGGTCGTAAAATATTAGACGCCTTTCCGGTTGGGGCCCAGTGGAAGGCAAGGGATGGTGCGTGTCTTGTGGTGGTGATAGCAGCGGTACTACATAGTAGCAGCAGCGTTAGCGAGAGGGAGCAGTTTTTTTTCTAATTAGTAGTGCAACATAGACACTCGACGACCGCCAAAATATTAGAAAAGCTTCGGAGCGTATAGCGCGCGGCCCATACACAAACACTACTTCCATATCTTCGTCACCGTATTGGATCATCACAAGTCAAGCGCAGTCAAGAAGAGACACAGCCCTACACGATGACGGTTGATAAAGGCCACACCAATACCGCGTTCGTCGGCGACGAAGCAATCAATGGCAAGAAACCACCGCAGGCGAAAACGATCGATCCCAACATGTACACGCTGGAGATACAGGAGAAGAAACCCGGCCTAGAGACGGAGTACGATCCGTTCCAGCACCGGCTGGTCGAGCATCCAACGACCAACAACGAAACGCTGATTCATCTGCTGAAGGGCTCGCTCGGCACTGGCA]




>consensus_2036#1
CCGGTCTAATATTTTGCTTGCTGCTTGCTACGTTTGGGTCGTAAAATATTAGACGCCTTT
CCGGTTGGGGCCCAGTGGAAGGCAAGGGATGGTGCGTGTCTTGTGGTGGTGATAGCAGCG
GTACTACATAGTAGCAGCAGCGTTAGCGAGAGGGAGCAGTTTTTTTTCTAATTAGTAGTG
CAACATAGACACTCGACGACCGCCAAAATATTAGAAAAGCTTCGGAGCGTATAGCGCGCG
GCCCATACACAAACACTACTTCCATATCTTCGTCACCGTATTGGATCATCACAAGTCAAG
CGCAGTCAAGAAGAGACACAGCCCTACACGATGACGGTTGATAAAGGCCACACCAATACC
GCGTTCGTCGGCGACGAAGCAATCAATGGCAAGAAACCACCGCAGGCGAAAACGATCGAT
CCCAACATGTACACGCTGGAGATACAGGAGAAGAAACCCGGCCTAGAGACGGAGTACGAT
CCGTTCCAGCACCGGCTGGTCGAGCATCCAACGACCAACAACGAAACGCTGATTCATCTG
CTGAAGGGCTCGCTCGGCACTGGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2036#0      ------------------------------------------------------------
consensus_2036#1      CCGGTCTAATATTTTGCTTGCTGCTTGCTACGTTTGGGTCGTAAAATATTAGACGCCTTT 60
                                                                                  

consensus_2036#0      ------------------------------------------------------------
consensus_2036#1      CCGGTTGGGGCCCAGTGGAAGGCAAGGGATGGTGCGTGTCTTGTGGTGGTGATAGCAGCG 120
                                                                                  

consensus_2036#0      -------------------------------------------------------CCGCG 5
consensus_2036#1      GTACTACATAGTAGCAGCAGCGTTAGCGAGAGGGAGCAGTTTTTTTTCTAATTAGTAGTG 180
                                                                               * *

consensus_2036#0      -GACGCGTGGGCTCGACGACCGCCAAAATATTAGAAAAGCTTCGGAGCGTATAGCGCGCG 64
consensus_2036#1      CAACATAGACACTCGACGACCGCCAAAATATTAGAAAAGCTTCGGAGCGTATAGCGCGCG 240
                        **       *************************************************

consensus_2036#0      GCCCATACACAAACACTACTTCCATATCTTCGTCACCGTATTGGATCATCACAAGTCAAG 124
consensus_2036#1      GCCCATACACAAACACTACTTCCATATCTTCGTCACCGTATTGGATCATCACAAGTCAAG 300
                      ************************************************************

consensus_2036#0      CGCAGTCAAGAAGAGACACAGCCCTACACGATGACGGTTGATAAAGGTCACACCAATACC 184
consensus_2036#1      CGCAGTCAAGAAGAGACACAGCCCTACACGATGACGGTTGATAAAGGCCACACCAATACC 360
                      *********************************************** ************

consensus_2036#0      GCGTTCGTCGGCGACGAAGCAATCAATGGCAAGAAACCACCGCAGGCGAAAACGATCGAT 244
consensus_2036#1      GCGTTCGTCGGCGACGAAGCAATCAATGGCAAGAAACCACCGCAGGCGAAAACGATCGAT 420
                      ************************************************************

consensus_2036#0      CCCAACATGTACACGCTGGAGATACAGGAGAAGAAACCCGGCCTAGAGACGGAGTACGAT 304
consensus_2036#1      CCCAACATGTACACGCTGGAGATACAGGAGAAGAAACCCGGCCTAGAGACGGAGTACGAT 480
                      ************************************************************

consensus_2036#0      CCGTTCCAGCACCGGCTGGTCGAGCATCCAACGACCAACAACGAAACGCTGATTCATCTG 364
consensus_2036#1      CCGTTCCAGCACCGGCTGGTCGAGCATCCAACGACCAACAACGAAACGCTGATTCATCTG 540
                      ************************************************************

consensus_2036#0      CTGAAGGGCTCGCTCGGCACTGGCATTCTCGCCATGCCGAACGCCTTCCACCATGCCGGG 424
consensus_2036#1      CTGAAGGGCTCGCTCGGCACTGGCA----------------------------------- 565
                      *************************                                   

consensus_2036#0      TGGACGGTGGGTGTTGTCGGTACGTTGCTGATCGGGCTCCTCTGTACGTACTGCATCCAC 484
consensus_2036#1      ------------------------------------------------------------
                                                                                  

consensus_2036#0      CTGCTGATCAAGGCGGAGTACGAGCTGTGCAAGCGGAAACGAGTGCCGAGTCTGAACTAT 544
consensus_2036#1      ------------------------------------------------------------
                                                                                  

consensus_2036#0      CCAGCCGTTACGCAGACGGCCCTGCTGGAGGGTCCGGACGCACTGGAAGCCACTGTCCAA 604
consensus_2036#1      ------------------------------------------------------------
                                                                                  

consensus_2036#0      AATCATTATCCACGTGGTGAACGTG 629
consensus_2036#1      -------------------------