These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2036#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 629 fasta sequence [CCGCGGACGCGTGGGCTCGACGACCGCCAAAATATTAGAAAAGCTTCGGAGCGTATAGCGCGCGGCCCATACACAAACACTACTTCCATATCTTCGTCACCGTATTGGATCATCACAAGTCAAGCGCAGTCAAGAAGAGACACAGCCCTACACGATGACGGTTGATAAAGGTCACACCAATACCGCGTTCGTCGGCGACGAAGCAATCAATGGCAAGAAACCACCGCAGGCGAAAACGATCGATCCCAACATGTACACGCTGGAGATACAGGAGAAGAAACCCGGCCTAGAGACGGAGTACGATCCGTTCCAGCACCGGCTGGTCGAGCATCCAACGACCAACAACGAAACGCTGATTCATCTGCTGAAGGGCTCGCTCGGCACTGGCATTCTCGCCATGCCGAACGCCTTCCACCATGCCGGGTGGACGGTGGGTGTTGTCGGTACGTTGCTGATCGGGCTCCTCTGTACGTACTGCATCCACCTGCTGATCAAGGCGGAGTACGAGCTGTGCAAGCGGAAACGAGTGCCGAGTCTGAACTATCCAGCCGTTACGCAGACGGCCCTGCTGGAGGGTCCGGACGCACTGGAAGCCACTGTCCAAAATCATTATCCACGTGGTGAACGTG] [+] EMBL BM588751 [CCGCGGACGCGTGGGCTCGACGACCGCCAAAATATTAGAAAAGCTTCGGAGCGTATAGCGCGCGGCCCATACACAAACACTACTTCCATATCTTCGTCACCGTATTGGATCATCACAAGTCAAGCGCAGTCAAGAAGAGACACAGCCCTACACGATGACGGTTGATAAAGGTCACACCAATACCGCGTTCGTCGGCGACGAAGCAATCAATGGCAAGAAACCACCGCAGGCGAAAACGATCGATCCCAACATGTACACGCTGGAGATACAGGAGAAGAAACCCGGCCTAGAGACGGAGTACGATCCGTTCCAGCACCGGCTGGTCGAGCATCCAACGACCAACAACGAAACGCTGATTCATCTGCTGAAGGGCTCGCTCGGCACTGGCATTCTCGCCATGCCGAACGCCTTCCACCATGCCGGGTGGACGGTGGGTGTTGTCGGTACGTTGCTGATCGGGCTCCTCTGTACGTACTGCATCCACCTGCTGATCAAGGCGGAGTACGAGCTGTGCAAGCGGAAACGAGTGCCGAGTCTGAACTATCCAGCCGTTACGCAGACGGCCCTGCTGGAGGGTCCGGACGCACTGGAAGCCACTGTCCAAAATCATTATCCACGTGGTGAACGTG] consensusID : consensus_2036#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence [CCGGTCTAATATTTTGCTTGCTGCTTGCTACGTTTGGGTCGTAAAATATTAGACGCCTTTCCGGTTGGGGCCCAGTGGAAGGCAAGGGATGGTGCGTGTCTTGTGGTGGTGATAGCAGCGGTACTACATAGTAGCAGCAGCGTTAGCGAGAGGGAGCAGTTTTTTTTCTAATTAGTAGTGCAACATAGACACTCGACGACCGCCAAAATATTAGAAAAGCTTCGGAGCGTATAGCGCGCGGCCCATACACAAACACTACTTCCATATCTTCGTCACCGTATTGGATCATCACAAGTCAAGCGCAGTCAAGAAGAGACACAGCCCTACACGATGACGGTTGATAAAGGCCACACCAATACCGCGTTCGTCGGCGACGAAGCAATCAATGGCAAGAAACCACCGCAGGCGAAAACGATCGATCCCAACATGTACACGCTGGAGATACAGGAGAAGAAACCCGGCCTAGAGACGGAGTACGATCCGTTCCAGCACCGGCTGGTCGAGCATCCAACGACCAACAACGAAACGCTGATTCATCTGCTGAAGGGCTCGCTCGGCACTGGCA] [+] EMBL BM611411 [CCGGTCTAATATTTTGCTTGCTGCTTGCTACGTTTGGGTCGTAAAATATTAGACGCCTTTCCGGTTGGGGCCCAGTGGAAGGCAAGGGATGGTGCGTGTCTTGTGGTGGTGATAGCAGCGGTACTACATAGTAGCAGCAGCGTTAGCGAGAGGGAGCAGTTTTTTTTCTAATTAGTAGTGCAACATAGACACTCGACGACCGCCAAAATATTAGAAAAGCTTCGGAGCGTATAGCGCGCGGCCCATACACAAACACTACTTCCATATCTTCGTCACCGTATTGGATCATCACAAGTCAAGCGCAGTCAAGAAGAGACACAGCCCTACACGATGACGGTTGATAAAGGCCACACCAATACCGCGTTCGTCGGCGACGAAGCAATCAATGGCAAGAAACCACCGCAGGCGAAAACGATCGATCCCAACATGTACACGCTGGAGATACAGGAGAAGAAACCCGGCCTAGAGACGGAGTACGATCCGTTCCAGCACCGGCTGGTCGAGCATCCAACGACCAACAACGAAACGCTGATTCATCTGCTGAAGGGCTCGCTCGGCACTGGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2036#0 ------------------------------------------------------------ consensus_2036#1 CCGGTCTAATATTTTGCTTGCTGCTTGCTACGTTTGGGTCGTAAAATATTAGACGCCTTT 60 consensus_2036#0 ------------------------------------------------------------ consensus_2036#1 CCGGTTGGGGCCCAGTGGAAGGCAAGGGATGGTGCGTGTCTTGTGGTGGTGATAGCAGCG 120 consensus_2036#0 -------------------------------------------------------CCGCG 5 consensus_2036#1 GTACTACATAGTAGCAGCAGCGTTAGCGAGAGGGAGCAGTTTTTTTTCTAATTAGTAGTG 180 * * consensus_2036#0 -GACGCGTGGGCTCGACGACCGCCAAAATATTAGAAAAGCTTCGGAGCGTATAGCGCGCG 64 consensus_2036#1 CAACATAGACACTCGACGACCGCCAAAATATTAGAAAAGCTTCGGAGCGTATAGCGCGCG 240 ** ************************************************* consensus_2036#0 GCCCATACACAAACACTACTTCCATATCTTCGTCACCGTATTGGATCATCACAAGTCAAG 124 consensus_2036#1 GCCCATACACAAACACTACTTCCATATCTTCGTCACCGTATTGGATCATCACAAGTCAAG 300 ************************************************************ consensus_2036#0 CGCAGTCAAGAAGAGACACAGCCCTACACGATGACGGTTGATAAAGGTCACACCAATACC 184 consensus_2036#1 CGCAGTCAAGAAGAGACACAGCCCTACACGATGACGGTTGATAAAGGCCACACCAATACC 360 *********************************************** ************ consensus_2036#0 GCGTTCGTCGGCGACGAAGCAATCAATGGCAAGAAACCACCGCAGGCGAAAACGATCGAT 244 consensus_2036#1 GCGTTCGTCGGCGACGAAGCAATCAATGGCAAGAAACCACCGCAGGCGAAAACGATCGAT 420 ************************************************************ consensus_2036#0 CCCAACATGTACACGCTGGAGATACAGGAGAAGAAACCCGGCCTAGAGACGGAGTACGAT 304 consensus_2036#1 CCCAACATGTACACGCTGGAGATACAGGAGAAGAAACCCGGCCTAGAGACGGAGTACGAT 480 ************************************************************ consensus_2036#0 CCGTTCCAGCACCGGCTGGTCGAGCATCCAACGACCAACAACGAAACGCTGATTCATCTG 364 consensus_2036#1 CCGTTCCAGCACCGGCTGGTCGAGCATCCAACGACCAACAACGAAACGCTGATTCATCTG 540 ************************************************************ consensus_2036#0 CTGAAGGGCTCGCTCGGCACTGGCATTCTCGCCATGCCGAACGCCTTCCACCATGCCGGG 424 consensus_2036#1 CTGAAGGGCTCGCTCGGCACTGGCA----------------------------------- 565 ************************* consensus_2036#0 TGGACGGTGGGTGTTGTCGGTACGTTGCTGATCGGGCTCCTCTGTACGTACTGCATCCAC 484 consensus_2036#1 ------------------------------------------------------------ consensus_2036#0 CTGCTGATCAAGGCGGAGTACGAGCTGTGCAAGCGGAAACGAGTGCCGAGTCTGAACTAT 544 consensus_2036#1 ------------------------------------------------------------ consensus_2036#0 CCAGCCGTTACGCAGACGGCCCTGCTGGAGGGTCCGGACGCACTGGAAGCCACTGTCCAA 604 consensus_2036#1 ------------------------------------------------------------ consensus_2036#0 AATCATTATCCACGTGGTGAACGTG 629 consensus_2036#1 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||