cluster # 2041

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Anopheles gambiae
cluster # 2041 cluster # 2041 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2041#0 length = 613 sequences # 1

consensus_2041#1 length = 566 sequences # 1

consensusID : consensus_2041#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 613
fasta sequence

                              [CCGCGGACGCGTGGGTCCGTCTGCCCCCCTTACGGGTTTGTGATAAATCCTTCCTGCTGCGCTTGGCCGTTCGTGCGTGTGCGTTGCCTGCGTGTTGTGCGTCTTTCTGTGCGTAAAATGTCCTCCAAGCGAAAGCCGGACGGTACGAAGAAGGCGGTGAAGAAGCGTAAAAACTCGGAGTCCAACTATGACTCCGACCTGAGCGACGAGTATCCGCGGGCGGGCGAACCGTCGACCCGCGAGGTGGTGGTCGAGGAGCTGCGACCGATGGAGAAGCTGCCGGAGGAGCTGCTGGCCGTGTACGACAAGGGTCCCGGCAAGCTGCTCATCGCTGGCATGGTGTCCTGGGAAATGACCGGCAAGCGGGACTCGAAGGGTGTCACAAAGATTCGGCCGAATCTGTTCACCTTCCATCGGTTCACCGGCGAAACGTACCGTTCGATGGCAAGCTTCTGTTCTGCCGCGCACTCGGTTTTAATTGATGAAAACTGGAAAGCTTTTACGTTCGGACGCAATCAGCTGAGCCAGCTGGGCCACGGCGATACGGTGACGTGCGAGAAGCCGACGCAGGTGGCCGACTTGGCCGACTTCAACGTCATACAGGCGGCGTGCG]

[+] EMBL BM610610             [CCGCGGACGCGTGGGTCCGTCTGCCCCCCTTACGGGTTTGTGATAAATCCTTCCTGCTGCGCTTGGCCGTTCGTGCGTGTGCGTTGCCTGCGTGTTGTGCGTCTTTCTGTGCGTAAAATGTCCTCCAAGCGAAAGCCGGACGGTACGAAGAAGGCGGTGAAGAAGCGTAAAAACTCGGAGTCCAACTATGACTCCGACCTGAGCGACGAGTATCCGCGGGCGGGCGAACCGTCGACCCGCGAGGTGGTGGTCGAGGAGCTGCGACCGATGGAGAAGCTGCCGGAGGAGCTGCTGGCCGTGTACGACAAGGGTCCCGGCAAGCTGCTCATCGCTGGCATGGTGTCCTGGGAAATGACCGGCAAGCGGGACTCGAAGGGTGTCACAAAGATTCGGCCGAATCTGTTCACCTTCCATCGGTTCACCGGCGAAACGTACCGTTCGATGGCAAGCTTCTGTTCTGCCGCGCACTCGGTTTTAATTGATGAAAACTGGAAAGCTTTTACGTTCGGACGCAATCAGCTGAGCCAGCTGGGCCACGGCGATACGGTGACGTGCGAGAAGCCGACGCAGGTGGCCGACTTGGCCGACTTCAACGTCATACAGGCGGCGTGCG]




>consensus_2041#0
CCGCGGACGCGTGGGTCCGTCTGCCCCCCTTACGGGTTTGTGATAAATCCTTCCTGCTGC
GCTTGGCCGTTCGTGCGTGTGCGTTGCCTGCGTGTTGTGCGTCTTTCTGTGCGTAAAATG
TCCTCCAAGCGAAAGCCGGACGGTACGAAGAAGGCGGTGAAGAAGCGTAAAAACTCGGAG
TCCAACTATGACTCCGACCTGAGCGACGAGTATCCGCGGGCGGGCGAACCGTCGACCCGC
GAGGTGGTGGTCGAGGAGCTGCGACCGATGGAGAAGCTGCCGGAGGAGCTGCTGGCCGTG
TACGACAAGGGTCCCGGCAAGCTGCTCATCGCTGGCATGGTGTCCTGGGAAATGACCGGC
AAGCGGGACTCGAAGGGTGTCACAAAGATTCGGCCGAATCTGTTCACCTTCCATCGGTTC
ACCGGCGAAACGTACCGTTCGATGGCAAGCTTCTGTTCTGCCGCGCACTCGGTTTTAATT
GATGAAAACTGGAAAGCTTTTACGTTCGGACGCAATCAGCTGAGCCAGCTGGGCCACGGC
GATACGGTGACGTGCGAGAAGCCGACGCAGGTGGCCGACTTGGCCGACTTCAACGTCATA
CAGGCGGCGTGCG

consensusID : consensus_2041#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 566
fasta sequence

                              [AATCGCCCGAGGNTTAATCTCGCTGGTTTGTCCCGTTCGGTTCGCGCTCCGGGTTCGCCGTCTTGCAAACGTCGCCTTTGTCCTCCCCCCCATTGTACTCTGTCCATTCCGTCTGCCCCCCTTACGGGTTTGTGATAAATCCTTCCTGCTGCGCTTGGCCATTCGTGCGTGTGCGTTGCCTGCGTGTTGTGCGTCTTTCTGTGCGTAAAATGTCCTCCAAGCGAAAGCCGGACGGTACGAAGAAGGCGGTGAAGAAGCGTAAAAACTCGGAGTCCAACTATGACTCTGACCTGAGCGACGAGTATCCGCGGGCGGGCGAACCGTCGACCCGCGAGGTGGTGGTCGAGGAGCTGCGACCGATGGAGAAGCTGCCGGAGGAGCTGCTGGCCGTGTACGACAAGGGCCCCGGCAAGCTGCTCATCGCTGGCATGGTGTCCTGGGAAATGACCGGCAAACGGGACTCGAAGGGTGTCACAAAGATTCGGCCGAATCTGTTCACCTTCCATCGGTTCACCGGCGAAACGTACCGTTCGATGGCAAGCTTCTGTTCTGCCGCGCACTCGGTT]

[+] EMBL AL932405             [AATCGCCCGAGGNTTAATCTCGCTGGTTTGTCCCGTTCGGTTCGCGCTCCGGGTTCGCCGTCTTGCAAACGTCGCCTTTGTCCTCCCCCCCATTGTACTCTGTCCATTCCGTCTGCCCCCCTTACGGGTTTGTGATAAATCCTTCCTGCTGCGCTTGGCCATTCGTGCGTGTGCGTTGCCTGCGTGTTGTGCGTCTTTCTGTGCGTAAAATGTCCTCCAAGCGAAAGCCGGACGGTACGAAGAAGGCGGTGAAGAAGCGTAAAAACTCGGAGTCCAACTATGACTCTGACCTGAGCGACGAGTATCCGCGGGCGGGCGAACCGTCGACCCGCGAGGTGGTGGTCGAGGAGCTGCGACCGATGGAGAAGCTGCCGGAGGAGCTGCTGGCCGTGTACGACAAGGGCCCCGGCAAGCTGCTCATCGCTGGCATGGTGTCCTGGGAAATGACCGGCAAACGGGACTCGAAGGGTGTCACAAAGATTCGGCCGAATCTGTTCACCTTCCATCGGTTCACCGGCGAAACGTACCGTTCGATGGCAAGCTTCTGTTCTGCCGCGCACTCGGTT]




>consensus_2041#1
AATCGCCCGAGGNTTAATCTCGCTGGTTTGTCCCGTTCGGTTCGCGCTCCGGGTTCGCCG
TCTTGCAAACGTCGCCTTTGTCCTCCCCCCCATTGTACTCTGTCCATTCCGTCTGCCCCC
CTTACGGGTTTGTGATAAATCCTTCCTGCTGCGCTTGGCCATTCGTGCGTGTGCGTTGCC
TGCGTGTTGTGCGTCTTTCTGTGCGTAAAATGTCCTCCAAGCGAAAGCCGGACGGTACGA
AGAAGGCGGTGAAGAAGCGTAAAAACTCGGAGTCCAACTATGACTCTGACCTGAGCGACG
AGTATCCGCGGGCGGGCGAACCGTCGACCCGCGAGGTGGTGGTCGAGGAGCTGCGACCGA
TGGAGAAGCTGCCGGAGGAGCTGCTGGCCGTGTACGACAAGGGCCCCGGCAAGCTGCTCA
TCGCTGGCATGGTGTCCTGGGAAATGACCGGCAAACGGGACTCGAAGGGTGTCACAAAGA
TTCGGCCGAATCTGTTCACCTTCCATCGGTTCACCGGCGAAACGTACCGTTCGATGGCAA
GCTTCTGTTCTGCCGCGCACTCGGTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2041#0      ------------------------------------------------------------
consensus_2041#1      AATCGCCCGAGGNTTAATCTCGCTGGTTTGTCCCGTTCGGTTCGCGCTCCGGGTTCGCCG 60
                                                                                  

consensus_2041#0      --------------------------------CCGCGGACGCGTGGGTCCGTCTGCCCCC 28
consensus_2041#1      TCTTGCAAACGTCGCCTTTGTCCTCCCCCCCATTGTACTCTGTCCATTCCGTCTGCCCCC 120
                                                        *    *       *************

consensus_2041#0      CTTACGGGTTTGTGATAAATCCTTCCTGCTGCGCTTGGCCGTTCGTGCGTGTGCGTTGCC 88
consensus_2041#1      CTTACGGGTTTGTGATAAATCCTTCCTGCTGCGCTTGGCCATTCGTGCGTGTGCGTTGCC 180
                      **************************************** *******************

consensus_2041#0      TGCGTGTTGTGCGTCTTTCTGTGCGTAAAATGTCCTCCAAGCGAAAGCCGGACGGTACGA 148
consensus_2041#1      TGCGTGTTGTGCGTCTTTCTGTGCGTAAAATGTCCTCCAAGCGAAAGCCGGACGGTACGA 240
                      ************************************************************

consensus_2041#0      AGAAGGCGGTGAAGAAGCGTAAAAACTCGGAGTCCAACTATGACTCCGACCTGAGCGACG 208
consensus_2041#1      AGAAGGCGGTGAAGAAGCGTAAAAACTCGGAGTCCAACTATGACTCTGACCTGAGCGACG 300
                      ********************************************** *************

consensus_2041#0      AGTATCCGCGGGCGGGCGAACCGTCGACCCGCGAGGTGGTGGTCGAGGAGCTGCGACCGA 268
consensus_2041#1      AGTATCCGCGGGCGGGCGAACCGTCGACCCGCGAGGTGGTGGTCGAGGAGCTGCGACCGA 360
                      ************************************************************

consensus_2041#0      TGGAGAAGCTGCCGGAGGAGCTGCTGGCCGTGTACGACAAGGGTCCCGGCAAGCTGCTCA 328
consensus_2041#1      TGGAGAAGCTGCCGGAGGAGCTGCTGGCCGTGTACGACAAGGGCCCCGGCAAGCTGCTCA 420
                      ******************************************* ****************

consensus_2041#0      TCGCTGGCATGGTGTCCTGGGAAATGACCGGCAAGCGGGACTCGAAGGGTGTCACAAAGA 388
consensus_2041#1      TCGCTGGCATGGTGTCCTGGGAAATGACCGGCAAACGGGACTCGAAGGGTGTCACAAAGA 480
                      ********************************** *************************

consensus_2041#0      TTCGGCCGAATCTGTTCACCTTCCATCGGTTCACCGGCGAAACGTACCGTTCGATGGCAA 448
consensus_2041#1      TTCGGCCGAATCTGTTCACCTTCCATCGGTTCACCGGCGAAACGTACCGTTCGATGGCAA 540
                      ************************************************************

consensus_2041#0      GCTTCTGTTCTGCCGCGCACTCGGTTTTAATTGATGAAAACTGGAAAGCTTTTACGTTCG 508
consensus_2041#1      GCTTCTGTTCTGCCGCGCACTCGGTT---------------------------------- 566
                      **************************                                  

consensus_2041#0      GACGCAATCAGCTGAGCCAGCTGGGCCACGGCGATACGGTGACGTGCGAGAAGCCGACGC 568
consensus_2041#1      ------------------------------------------------------------
                                                                                  

consensus_2041#0      AGGTGGCCGACTTGGCCGACTTCAACGTCATACAGGCGGCGTGCG 613
consensus_2041#1      ---------------------------------------------