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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2046#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1080 fasta sequence
[ATCNAATGTATATCCGGTCGGTACTGGACTCGTTTGAGCTGCTCCTCCGTGTAAAGTGCATTTTTTTTTTTAATTAACTGAACCTTTTCCGACAAATTTGGCTTAACAATATTGCATTTAACCTTGCCATCAAACCATGTGTGCATGCCGCGTAAGAACACCGAATAAAATCCGCTCCTTGCTGAAGTGTAACCTGGTGCTGGCTGGCTGTGGCTGTCTTCAGCTGCTGTACATGCTGTGTGCCTGGNGCTGATGATGAAATTCTACAACAACCTGTTGTTCAATGCCTGATCTGTCCTGGCTGATACCTGCCNGTGAAACTGTGCCACTGATCTTGGCTGTGTTGCTTGGTGCTGTCAATGTGGAAAGCTTGTTCCTGCCCACCTGTACCATGGACACTGTGACCTGTGTTTGCTGCACCCTGTGCTTGCTCTGTGCCATTGGGCTGTTTCAAGCAACCCTGATCTGTGCATTTTGCTGGCCTGGTGTTCTGACAATGCACTGTGGCTGAAAGGCCTGTCCAAGTGTGCCTTGCAAGCTTGAATCTGGGGGTTCCGGGGTTTTGTTGGAGACTCTGTGCTCTGTGTCACTGCCCTGAAACCTGCAGCCTGGTGGCAAATGCTGATGACCTGCTGCATTCTTTTCTGCCTTGAACTGATGTGCACCAAATGCTGATCTGTCAATCNTGGGTTACTGGGGTTCAACATGGCTGATGTGTGCCACTGGACTGTGGGTTGTATTGAACTGTGTTTACCGCTGCTGAAGTTGCCTGNTGAAACATGCGAAGCCACACTGTGACNCCATGCCTGTTGGTCTGCCCCTCCGGGGATTCAAATCTTGTGTGGCCAATGGAACCCAAANGCTTGTCTCGCTTGGGGAATTGCGAATCTGCCCTGACTAAACCGTTGCAAGGTGGGCTGTTGCACATGACTGGGTCTTCCGTGGACTGTTTGGCCCTGAGCTAATCATTGGGGTTTGATTTAAACCTGTTGAAGGCAATGGCCCCGAAAAAACATGGCCCGGAGCTTGGTGGTGANACTGAAGTTGGCANGAAGGACAAATGCAGGCCACAACTTTGCG]
[+] EMBL AL931997 [ATCNAATGTATATCCGGTCGGTACTGGACTCGTTTGAGCTGCTCCTCCGTGTAAAGTGCATTTTTTTTTTTAATTAACTGAACCTTTTCCGACAAATTTGGCTTAACAATATTGCATTTAACCTTGCCATCAAACCATGTGTGCATGCCGCGTAAGAACACCGAATAAAATCCGCTCCTTGCTGAAGTGTAACCTGGTGCTGGCTGGCTGTGGCTGTCTTCAGCTGCTGTACATGCTGTGTGCCTGGNGCTGATGATGAAATTCTACAACAACCTGTTGTTCAATGCCTGATCTGTCCTGGCTGATACCTGCCNGTGAAACTGTGCCACTGATCTTGGCTGTGTTGCTTGGTGCTGTCAATGTGGAAAGCTTGTTCCTGCCCACCTGTACCATGGACACTGTGACCTGTGTTTGCTGCACCCTGTGCTTGCTCTGTGCCATTGGGCTGTTTCAAGCAACCCTGATCTGTGCATTTTGCTGGCCTGGTGTTCTGACAATGCACTGTGGCTGAAAGGCCTGTCCAAGTGTGCCTTGCAAGCTTGAATCTGGGGGTTCCGGGGTTTTGTTGGAGACTCTGTGCTCTGTGTCACTGCCCTGAAACCTGCAGCCTGGTGGCAAATGCTGATGACCTGCTGCATTCTTTTCTGCCTTGAACTGATGTGCACCAAATGCTGATCTGTCAATCNTGGGTTACTGGGGTTCAACATGGCTGATGTGTGCCACTGGACTGTGGGTTGTATTGAACTGTGTTTACCGCTGCTGAAGTTGCCTGNTGAAACATGCGAAGCCACACTGTGACNCCATGCCTGTTGGTCTGCCCCTCCGGGGATTCAAATCTTGTGTGGCCAATGGAACCCAAANGCTTGTCTCGCTTGGGGAATTGCGAATCTGCCCTGACTAAACCGTTGCAAGGTGGGCTGTTGCACATGACTGGGTCTTCCGTGGACTGTTTGGCCCTGAGCTAATCATTGGGGTTTGATTTAAACCTGTTGAAGGCAATGGCCCCGAAAAAACATGGCCCGGAGCTTGGTGGTGANACTGAAGTTGGCANGAAGGACAAATGCAGGCCACAACTTTGCG]
consensusID : consensus_2046#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence
[CCGGCACACGCACACCGTGGAAACTTTCACTTTCTGCACGATTCACAAACAAGCAAAACAGTGAAGAAGTATCATCCGGTTCGGTAACGGACTCGTTTGAGCGCTCCTCCGTGTAAAGTGCATTTTTTTTTTTAATTAACGAACCTTTTCCGACAAATTTGGCTTAACAATATTGCATTTAACCTTGCCATCAAACCATGTGTGCATGCCGCGTAAGAACACCGAATAAAATCCGCTCCTTGCTGAAGGTAACCGGGCTGGCGGCGGGCGTCTTCAGCGCGTACAGCGTGTGCCGGGGCGATGAGAAATTCTACAACAACGTGTTCATGCCGATCGTCCGGCTGATACCGCCGGAAACGGCCCACGATCTGGCGGTGCTGGGCGTCAAGTGGAAGCTGTTCCGCCCACCGTACCAGGACACGGACCGGTTGCGCACCCGGCTGCTCGGCATGGCGTTCAGCAACCCGATCGGCATTGCGGCCGGGTTCGACAAGCACGGCGAAGCCGTCCAGGGGCTGCAGCTGATCGGGTTCGGGTTTGTGGAGATCGGCTCGGTCACGCCCGAACCGCAGCCGGGCAATGCGAGACCGCGCAT]
[+] EMBL BM582362 [CCGGCACACGCACACCGTGGAAACTTTCACTTTCTGCACGATTCACAAACAAGCAAAACAGTGAAGAAGTATCATCCGGTTCGGTAACGGACTCGTTTGAGCGCTCCTCCGTGTAAAGTGCATTTTTTTTTTTAATTAACGAACCTTTTCCGACAAATTTGGCTTAACAATATTGCATTTAACCTTGCCATCAAACCATGTGTGCATGCCGCGTAAGAACACCGAATAAAATCCGCTCCTTGCTGAAGGTAACCGGGCTGGCGGCGGGCGTCTTCAGCGCGTACAGCGTGTGCCGGGGCGATGAGAAATTCTACAACAACGTGTTCATGCCGATCGTCCGGCTGATACCGCCGGAAACGGCCCACGATCTGGCGGTGCTGGGCGTCAAGTGGAAGCTGTTCCGCCCACCGTACCAGGACACGGACCGGTTGCGCACCCGGCTGCTCGGCATGGCGTTCAGCAACCCGATCGGCATTGCGGCCGGGTTCGACAAGCACGGCGAAGCCGTCCAGGGGCTGCAGCTGATCGGGTTCGGGTTTGTGGAGATCGGCTCGGTCACGCCCGAACCGCAGCCGGGCAATGCGAGACCGCGCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2046#0 ------------------------------------------------------------
consensus_2046#1 CCGGCACACGCACACCGTGGAAACTTTCACTTTCTGCACGATTCACAAACAAGCAAAACA 60
consensus_2046#0 ATCNA-ATGTAT-ATCCGGT-CGGTACTGGACTCGTTTGAGCTGCTCCTCCGTGTAAAGT 57
consensus_2046#1 GTGAAGAAGTATCATCCGGTTCGGTAACGGACTCGTTTGAGC-GCTCCTCCGTGTAAAGT 119
* * * **** ******* ***** ************** *****************
consensus_2046#0 GCATTTTTTTTTTTAATTAACTGAACCTTTTCCGACAAATTTGGCTTAACAATATTGCAT 117
consensus_2046#1 GCATTTTTTTTTTTAATTAAC-GAACCTTTTCCGACAAATTTGGCTTAACAATATTGCAT 178
********************* **************************************
consensus_2046#0 TTAACCTTGCCATCAAACCATGTGTGCATGCCGCGTAAGAACACCGAATAAAATCCGCTC 177
consensus_2046#1 TTAACCTTGCCATCAAACCATGTGTGCATGCCGCGTAAGAACACCGAATAAAATCCGCTC 238
************************************************************
consensus_2046#0 CTTGCTGAAGTGTAACCTGGTGCTGGCTGGCTGTGGCTGTCTTCAGCTGCTGTACATGCT 237
consensus_2046#1 CTTGCTGAAG-GTAACCGG------GCTGGCGGCGGGCGTCTTCAGC----GCGTACAGC 287
********** ****** * ****** * ** ********* * *
consensus_2046#0 GTGTGCCTGGNGCTGATGATGAAATTCTACAACAACCTGTTGTTCAATGCCTGATCTGTC 297
consensus_2046#1 GTGTGCCGGGG--CGATGA-GAAATTCTACAACAACGTGTT----CATGCC-GATC-GTC 338
******* ** ***** **************** **** ***** **** ***
consensus_2046#0 CTGGCTGATACCTGCCNGTGAAACTGTGCCACTGATCTTGGCTGTGTTGCTTGGTGCTGT 357
consensus_2046#1 C-GGCTGATACC-GCCGG--AAACGGC-CCAC-GATCT-GGCGGTGCTG------GGCGT 385
* ********** *** * **** * **** ***** *** *** ** * **
consensus_2046#0 CAATGTGGAAAGCTTGTTCCTGCCCACCTGTACCATGGACACTGTGACCTGTGTTTGCTG 417
consensus_2046#1 CAA-GTGGAAG--CTGTTCC-GCCCACC-GTACCA-GGACACG--GACCGGT---TGC-G 433
*** ****** ****** ******* ****** ****** **** ** *** *
consensus_2046#0 CACCCTGTGCTTGCTCTGTGCCATTGGGCTGTTTCAAGCAACCCTGATCTGTGCATTTTG 477
consensus_2046#1 CACCCGGC---TGCTCGGCAT------GGCGTTC--AGCAACCC-GATCGGCA----TTG 477
***** * ***** * * *** ******** **** * ***
consensus_2046#0 CTGGCCTGGTGTTCTGACAATGCACTGTGGCTGAAAGGCCTGTCCAAGTGTGCCTTGCAA 537
consensus_2046#1 C-GGCCGGG---TTCGACAA-GCACGGCG-----AAG--CCGTCCAGGGG--CTGCAGCT 523
* **** ** * ***** **** * * *** * ***** * * *
consensus_2046#0 GCTTGAATCTGGGGGTTCCGGGGTTTTGTTGGAGACTCTGTGCTCTGTGTCACTGCCCTG 597
consensus_2046#1 GATCGGGTTCGGGTTTGTGGAGATCGGCTCGGTCACGC------CCGAACCGCAGCCGGG 577
* * * * *** * * * * * ** ** * * * * * *** *
consensus_2046#0 AAACCTGCAGCCTGGTGGCAAATGCTGATGACCTGCTGCATTCTTTTCTGCCTTGAACTG 657
consensus_2046#1 CAATGCGAGACCGCGCAT------------------------------------------ 595
** * ** *
consensus_2046#0 ATGTGCACCAAATGCTGATCTGTCAATCNTGGGTTACTGGGGTTCAACATGGCTGATGTG 717
consensus_2046#1 ------------------------------------------------------------
consensus_2046#0 TGCCACTGGACTGTGGGTTGTATTGAACTGTGTTTACCGCTGCTGAAGTTGCCTGNTGAA 777
consensus_2046#1 ------------------------------------------------------------
consensus_2046#0 ACATGCGAAGCCACACTGTGACNCCATGCCTGTTGGTCTGCCCCTCCGGGGATTCAAATC 837
consensus_2046#1 ------------------------------------------------------------
consensus_2046#0 TTGTGTGGCCAATGGAACCCAAANGCTTGTCTCGCTTGGGGAATTGCGAATCTGCCCTGA 897
consensus_2046#1 ------------------------------------------------------------
consensus_2046#0 CTAAACCGTTGCAAGGTGGGCTGTTGCACATGACTGGGTCTTCCGTGGACTGTTTGGCCC 957
consensus_2046#1 ------------------------------------------------------------
consensus_2046#0 TGAGCTAATCATTGGGGTTTGATTTAAACCTGTTGAAGGCAATGGCCCCGAAAAAACATG 1017
consensus_2046#1 ------------------------------------------------------------
consensus_2046#0 GCCCGGAGCTTGGTGGTGANACTGAAGTTGGCANGAAGGACAAATGCAGGCCACAACTTT 1077
consensus_2046#1 ------------------------------------------------------------
consensus_2046#0 GCG 1080
consensus_2046#1 ---
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||