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Anopheles gambiae
cluster # 2046 cluster # 2046       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2046#0 length = 1080 sequences # 1  
consensus_2046#1 length = 595 sequences # 1  

consensusID : consensus_2046#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1080
fasta sequence
                              [ATCNAATGTATATCCGGTCGGTACTGGACTCGTTTGAGCTGCTCCTCCGTGTAAAGTGCATTTTTTTTTTTAATTAACTGAACCTTTTCCGACAAATTTGGCTTAACAATATTGCATTTAACCTTGCCATCAAACCATGTGTGCATGCCGCGTAAGAACACCGAATAAAATCCGCTCCTTGCTGAAGTGTAACCTGGTGCTGGCTGGCTGTGGCTGTCTTCAGCTGCTGTACATGCTGTGTGCCTGGNGCTGATGATGAAATTCTACAACAACCTGTTGTTCAATGCCTGATCTGTCCTGGCTGATACCTGCCNGTGAAACTGTGCCACTGATCTTGGCTGTGTTGCTTGGTGCTGTCAATGTGGAAAGCTTGTTCCTGCCCACCTGTACCATGGACACTGTGACCTGTGTTTGCTGCACCCTGTGCTTGCTCTGTGCCATTGGGCTGTTTCAAGCAACCCTGATCTGTGCATTTTGCTGGCCTGGTGTTCTGACAATGCACTGTGGCTGAAAGGCCTGTCCAAGTGTGCCTTGCAAGCTTGAATCTGGGGGTTCCGGGGTTTTGTTGGAGACTCTGTGCTCTGTGTCACTGCCCTGAAACCTGCAGCCTGGTGGCAAATGCTGATGACCTGCTGCATTCTTTTCTGCCTTGAACTGATGTGCACCAAATGCTGATCTGTCAATCNTGGGTTACTGGGGTTCAACATGGCTGATGTGTGCCACTGGACTGTGGGTTGTATTGAACTGTGTTTACCGCTGCTGAAGTTGCCTGNTGAAACATGCGAAGCCACACTGTGACNCCATGCCTGTTGGTCTGCCCCTCCGGGGATTCAAATCTTGTGTGGCCAATGGAACCCAAANGCTTGTCTCGCTTGGGGAATTGCGAATCTGCCCTGACTAAACCGTTGCAAGGTGGGCTGTTGCACATGACTGGGTCTTCCGTGGACTGTTTGGCCCTGAGCTAATCATTGGGGTTTGATTTAAACCTGTTGAAGGCAATGGCCCCGAAAAAACATGGCCCGGAGCTTGGTGGTGANACTGAAGTTGGCANGAAGGACAAATGCAGGCCACAACTTTGCG]

[+] EMBL AL931997             [ATCNAATGTATATCCGGTCGGTACTGGACTCGTTTGAGCTGCTCCTCCGTGTAAAGTGCATTTTTTTTTTTAATTAACTGAACCTTTTCCGACAAATTTGGCTTAACAATATTGCATTTAACCTTGCCATCAAACCATGTGTGCATGCCGCGTAAGAACACCGAATAAAATCCGCTCCTTGCTGAAGTGTAACCTGGTGCTGGCTGGCTGTGGCTGTCTTCAGCTGCTGTACATGCTGTGTGCCTGGNGCTGATGATGAAATTCTACAACAACCTGTTGTTCAATGCCTGATCTGTCCTGGCTGATACCTGCCNGTGAAACTGTGCCACTGATCTTGGCTGTGTTGCTTGGTGCTGTCAATGTGGAAAGCTTGTTCCTGCCCACCTGTACCATGGACACTGTGACCTGTGTTTGCTGCACCCTGTGCTTGCTCTGTGCCATTGGGCTGTTTCAAGCAACCCTGATCTGTGCATTTTGCTGGCCTGGTGTTCTGACAATGCACTGTGGCTGAAAGGCCTGTCCAAGTGTGCCTTGCAAGCTTGAATCTGGGGGTTCCGGGGTTTTGTTGGAGACTCTGTGCTCTGTGTCACTGCCCTGAAACCTGCAGCCTGGTGGCAAATGCTGATGACCTGCTGCATTCTTTTCTGCCTTGAACTGATGTGCACCAAATGCTGATCTGTCAATCNTGGGTTACTGGGGTTCAACATGGCTGATGTGTGCCACTGGACTGTGGGTTGTATTGAACTGTGTTTACCGCTGCTGAAGTTGCCTGNTGAAACATGCGAAGCCACACTGTGACNCCATGCCTGTTGGTCTGCCCCTCCGGGGATTCAAATCTTGTGTGGCCAATGGAACCCAAANGCTTGTCTCGCTTGGGGAATTGCGAATCTGCCCTGACTAAACCGTTGCAAGGTGGGCTGTTGCACATGACTGGGTCTTCCGTGGACTGTTTGGCCCTGAGCTAATCATTGGGGTTTGATTTAAACCTGTTGAAGGCAATGGCCCCGAAAAAACATGGCCCGGAGCTTGGTGGTGANACTGAAGTTGGCANGAAGGACAAATGCAGGCCACAACTTTGCG]


>consensus_2046#0 ATCNAATGTATATCCGGTCGGTACTGGACTCGTTTGAGCTGCTCCTCCGTGTAAAGTGCA TTTTTTTTTTTAATTAACTGAACCTTTTCCGACAAATTTGGCTTAACAATATTGCATTTA ACCTTGCCATCAAACCATGTGTGCATGCCGCGTAAGAACACCGAATAAAATCCGCTCCTT GCTGAAGTGTAACCTGGTGCTGGCTGGCTGTGGCTGTCTTCAGCTGCTGTACATGCTGTG TGCCTGGNGCTGATGATGAAATTCTACAACAACCTGTTGTTCAATGCCTGATCTGTCCTG GCTGATACCTGCCNGTGAAACTGTGCCACTGATCTTGGCTGTGTTGCTTGGTGCTGTCAA TGTGGAAAGCTTGTTCCTGCCCACCTGTACCATGGACACTGTGACCTGTGTTTGCTGCAC CCTGTGCTTGCTCTGTGCCATTGGGCTGTTTCAAGCAACCCTGATCTGTGCATTTTGCTG GCCTGGTGTTCTGACAATGCACTGTGGCTGAAAGGCCTGTCCAAGTGTGCCTTGCAAGCT TGAATCTGGGGGTTCCGGGGTTTTGTTGGAGACTCTGTGCTCTGTGTCACTGCCCTGAAA CCTGCAGCCTGGTGGCAAATGCTGATGACCTGCTGCATTCTTTTCTGCCTTGAACTGATG TGCACCAAATGCTGATCTGTCAATCNTGGGTTACTGGGGTTCAACATGGCTGATGTGTGC CACTGGACTGTGGGTTGTATTGAACTGTGTTTACCGCTGCTGAAGTTGCCTGNTGAAACA TGCGAAGCCACACTGTGACNCCATGCCTGTTGGTCTGCCCCTCCGGGGATTCAAATCTTG TGTGGCCAATGGAACCCAAANGCTTGTCTCGCTTGGGGAATTGCGAATCTGCCCTGACTA AACCGTTGCAAGGTGGGCTGTTGCACATGACTGGGTCTTCCGTGGACTGTTTGGCCCTGA GCTAATCATTGGGGTTTGATTTAAACCTGTTGAAGGCAATGGCCCCGAAAAAACATGGCC CGGAGCTTGGTGGTGANACTGAAGTTGGCANGAAGGACAAATGCAGGCCACAACTTTGCG



consensusID : consensus_2046#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 595
fasta sequence
                              [CCGGCACACGCACACCGTGGAAACTTTCACTTTCTGCACGATTCACAAACAAGCAAAACAGTGAAGAAGTATCATCCGGTTCGGTAACGGACTCGTTTGAGCGCTCCTCCGTGTAAAGTGCATTTTTTTTTTTAATTAACGAACCTTTTCCGACAAATTTGGCTTAACAATATTGCATTTAACCTTGCCATCAAACCATGTGTGCATGCCGCGTAAGAACACCGAATAAAATCCGCTCCTTGCTGAAGGTAACCGGGCTGGCGGCGGGCGTCTTCAGCGCGTACAGCGTGTGCCGGGGCGATGAGAAATTCTACAACAACGTGTTCATGCCGATCGTCCGGCTGATACCGCCGGAAACGGCCCACGATCTGGCGGTGCTGGGCGTCAAGTGGAAGCTGTTCCGCCCACCGTACCAGGACACGGACCGGTTGCGCACCCGGCTGCTCGGCATGGCGTTCAGCAACCCGATCGGCATTGCGGCCGGGTTCGACAAGCACGGCGAAGCCGTCCAGGGGCTGCAGCTGATCGGGTTCGGGTTTGTGGAGATCGGCTCGGTCACGCCCGAACCGCAGCCGGGCAATGCGAGACCGCGCAT]

[+] EMBL BM582362             [CCGGCACACGCACACCGTGGAAACTTTCACTTTCTGCACGATTCACAAACAAGCAAAACAGTGAAGAAGTATCATCCGGTTCGGTAACGGACTCGTTTGAGCGCTCCTCCGTGTAAAGTGCATTTTTTTTTTTAATTAACGAACCTTTTCCGACAAATTTGGCTTAACAATATTGCATTTAACCTTGCCATCAAACCATGTGTGCATGCCGCGTAAGAACACCGAATAAAATCCGCTCCTTGCTGAAGGTAACCGGGCTGGCGGCGGGCGTCTTCAGCGCGTACAGCGTGTGCCGGGGCGATGAGAAATTCTACAACAACGTGTTCATGCCGATCGTCCGGCTGATACCGCCGGAAACGGCCCACGATCTGGCGGTGCTGGGCGTCAAGTGGAAGCTGTTCCGCCCACCGTACCAGGACACGGACCGGTTGCGCACCCGGCTGCTCGGCATGGCGTTCAGCAACCCGATCGGCATTGCGGCCGGGTTCGACAAGCACGGCGAAGCCGTCCAGGGGCTGCAGCTGATCGGGTTCGGGTTTGTGGAGATCGGCTCGGTCACGCCCGAACCGCAGCCGGGCAATGCGAGACCGCGCAT]


>consensus_2046#1 CCGGCACACGCACACCGTGGAAACTTTCACTTTCTGCACGATTCACAAACAAGCAAAACA GTGAAGAAGTATCATCCGGTTCGGTAACGGACTCGTTTGAGCGCTCCTCCGTGTAAAGTG CATTTTTTTTTTTAATTAACGAACCTTTTCCGACAAATTTGGCTTAACAATATTGCATTT AACCTTGCCATCAAACCATGTGTGCATGCCGCGTAAGAACACCGAATAAAATCCGCTCCT TGCTGAAGGTAACCGGGCTGGCGGCGGGCGTCTTCAGCGCGTACAGCGTGTGCCGGGGCG ATGAGAAATTCTACAACAACGTGTTCATGCCGATCGTCCGGCTGATACCGCCGGAAACGG CCCACGATCTGGCGGTGCTGGGCGTCAAGTGGAAGCTGTTCCGCCCACCGTACCAGGACA CGGACCGGTTGCGCACCCGGCTGCTCGGCATGGCGTTCAGCAACCCGATCGGCATTGCGG CCGGGTTCGACAAGCACGGCGAAGCCGTCCAGGGGCTGCAGCTGATCGGGTTCGGGTTTG TGGAGATCGGCTCGGTCACGCCCGAACCGCAGCCGGGCAATGCGAGACCGCGCAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2046#0      ------------------------------------------------------------
consensus_2046#1      CCGGCACACGCACACCGTGGAAACTTTCACTTTCTGCACGATTCACAAACAAGCAAAACA 60
                                                                                  

consensus_2046#0      ATCNA-ATGTAT-ATCCGGT-CGGTACTGGACTCGTTTGAGCTGCTCCTCCGTGTAAAGT 57
consensus_2046#1      GTGAAGAAGTATCATCCGGTTCGGTAACGGACTCGTTTGAGC-GCTCCTCCGTGTAAAGT 119
                       *  * * **** ******* *****  ************** *****************

consensus_2046#0      GCATTTTTTTTTTTAATTAACTGAACCTTTTCCGACAAATTTGGCTTAACAATATTGCAT 117
consensus_2046#1      GCATTTTTTTTTTTAATTAAC-GAACCTTTTCCGACAAATTTGGCTTAACAATATTGCAT 178
                      ********************* **************************************

consensus_2046#0      TTAACCTTGCCATCAAACCATGTGTGCATGCCGCGTAAGAACACCGAATAAAATCCGCTC 177
consensus_2046#1      TTAACCTTGCCATCAAACCATGTGTGCATGCCGCGTAAGAACACCGAATAAAATCCGCTC 238
                      ************************************************************

consensus_2046#0      CTTGCTGAAGTGTAACCTGGTGCTGGCTGGCTGTGGCTGTCTTCAGCTGCTGTACATGCT 237
consensus_2046#1      CTTGCTGAAG-GTAACCGG------GCTGGCGGCGGGCGTCTTCAGC----GCGTACAGC 287
                      ********** ****** *      ****** * **  *********    *   *    

consensus_2046#0      GTGTGCCTGGNGCTGATGATGAAATTCTACAACAACCTGTTGTTCAATGCCTGATCTGTC 297
consensus_2046#1      GTGTGCCGGGG--CGATGA-GAAATTCTACAACAACGTGTT----CATGCC-GATC-GTC 338
                      ******* **    ***** **************** ****     ***** **** ***

consensus_2046#0      CTGGCTGATACCTGCCNGTGAAACTGTGCCACTGATCTTGGCTGTGTTGCTTGGTGCTGT 357
consensus_2046#1      C-GGCTGATACC-GCCGG--AAACGGC-CCAC-GATCT-GGCGGTGCTG------GGCGT 385
                      * ********** *** *  **** *  **** ***** *** *** **      *  **

consensus_2046#0      CAATGTGGAAAGCTTGTTCCTGCCCACCTGTACCATGGACACTGTGACCTGTGTTTGCTG 417
consensus_2046#1      CAA-GTGGAAG--CTGTTCC-GCCCACC-GTACCA-GGACACG--GACCGGT---TGC-G 433
                      *** ******    ****** ******* ****** ******   **** **   *** *

consensus_2046#0      CACCCTGTGCTTGCTCTGTGCCATTGGGCTGTTTCAAGCAACCCTGATCTGTGCATTTTG 477
consensus_2046#1      CACCCGGC---TGCTCGGCAT------GGCGTTC--AGCAACCC-GATCGGCA----TTG 477
                      ***** *    ***** *         *  ***   ******** **** *      ***

consensus_2046#0      CTGGCCTGGTGTTCTGACAATGCACTGTGGCTGAAAGGCCTGTCCAAGTGTGCCTTGCAA 537
consensus_2046#1      C-GGCCGGG---TTCGACAA-GCACGGCG-----AAG--CCGTCCAGGGG--CTGCAGCT 523
                      * **** **   *  ***** **** * *     ***  * ***** * *  *       

consensus_2046#0      GCTTGAATCTGGGGGTTCCGGGGTTTTGTTGGAGACTCTGTGCTCTGTGTCACTGCCCTG 597
consensus_2046#1      GATCGGGTTCGGGTTTGTGGAGATCGGCTCGGTCACGC------CCGAACCGCAGCCGGG 577
                      * * *  *  ***  *   * * *    * **  ** *      * *   * * ***  *

consensus_2046#0      AAACCTGCAGCCTGGTGGCAAATGCTGATGACCTGCTGCATTCTTTTCTGCCTTGAACTG 657
consensus_2046#1      CAATGCGAGACCGCGCAT------------------------------------------ 595
                       **   *   **  *                                             

consensus_2046#0      ATGTGCACCAAATGCTGATCTGTCAATCNTGGGTTACTGGGGTTCAACATGGCTGATGTG 717
consensus_2046#1      ------------------------------------------------------------
                                                                                  

consensus_2046#0      TGCCACTGGACTGTGGGTTGTATTGAACTGTGTTTACCGCTGCTGAAGTTGCCTGNTGAA 777
consensus_2046#1      ------------------------------------------------------------
                                                                                  

consensus_2046#0      ACATGCGAAGCCACACTGTGACNCCATGCCTGTTGGTCTGCCCCTCCGGGGATTCAAATC 837
consensus_2046#1      ------------------------------------------------------------
                                                                                  

consensus_2046#0      TTGTGTGGCCAATGGAACCCAAANGCTTGTCTCGCTTGGGGAATTGCGAATCTGCCCTGA 897
consensus_2046#1      ------------------------------------------------------------
                                                                                  

consensus_2046#0      CTAAACCGTTGCAAGGTGGGCTGTTGCACATGACTGGGTCTTCCGTGGACTGTTTGGCCC 957
consensus_2046#1      ------------------------------------------------------------
                                                                                  

consensus_2046#0      TGAGCTAATCATTGGGGTTTGATTTAAACCTGTTGAAGGCAATGGCCCCGAAAAAACATG 1017
consensus_2046#1      ------------------------------------------------------------
                                                                                  

consensus_2046#0      GCCCGGAGCTTGGTGGTGANACTGAAGTTGGCANGAAGGACAAATGCAGGCCACAACTTT 1077
consensus_2046#1      ------------------------------------------------------------
                                                                                  

consensus_2046#0      GCG 1080
consensus_2046#1      ---
                         




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)