These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2046#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1080 fasta sequence [ATCNAATGTATATCCGGTCGGTACTGGACTCGTTTGAGCTGCTCCTCCGTGTAAAGTGCATTTTTTTTTTTAATTAACTGAACCTTTTCCGACAAATTTGGCTTAACAATATTGCATTTAACCTTGCCATCAAACCATGTGTGCATGCCGCGTAAGAACACCGAATAAAATCCGCTCCTTGCTGAAGTGTAACCTGGTGCTGGCTGGCTGTGGCTGTCTTCAGCTGCTGTACATGCTGTGTGCCTGGNGCTGATGATGAAATTCTACAACAACCTGTTGTTCAATGCCTGATCTGTCCTGGCTGATACCTGCCNGTGAAACTGTGCCACTGATCTTGGCTGTGTTGCTTGGTGCTGTCAATGTGGAAAGCTTGTTCCTGCCCACCTGTACCATGGACACTGTGACCTGTGTTTGCTGCACCCTGTGCTTGCTCTGTGCCATTGGGCTGTTTCAAGCAACCCTGATCTGTGCATTTTGCTGGCCTGGTGTTCTGACAATGCACTGTGGCTGAAAGGCCTGTCCAAGTGTGCCTTGCAAGCTTGAATCTGGGGGTTCCGGGGTTTTGTTGGAGACTCTGTGCTCTGTGTCACTGCCCTGAAACCTGCAGCCTGGTGGCAAATGCTGATGACCTGCTGCATTCTTTTCTGCCTTGAACTGATGTGCACCAAATGCTGATCTGTCAATCNTGGGTTACTGGGGTTCAACATGGCTGATGTGTGCCACTGGACTGTGGGTTGTATTGAACTGTGTTTACCGCTGCTGAAGTTGCCTGNTGAAACATGCGAAGCCACACTGTGACNCCATGCCTGTTGGTCTGCCCCTCCGGGGATTCAAATCTTGTGTGGCCAATGGAACCCAAANGCTTGTCTCGCTTGGGGAATTGCGAATCTGCCCTGACTAAACCGTTGCAAGGTGGGCTGTTGCACATGACTGGGTCTTCCGTGGACTGTTTGGCCCTGAGCTAATCATTGGGGTTTGATTTAAACCTGTTGAAGGCAATGGCCCCGAAAAAACATGGCCCGGAGCTTGGTGGTGANACTGAAGTTGGCANGAAGGACAAATGCAGGCCACAACTTTGCG] [+] EMBL AL931997 [ATCNAATGTATATCCGGTCGGTACTGGACTCGTTTGAGCTGCTCCTCCGTGTAAAGTGCATTTTTTTTTTTAATTAACTGAACCTTTTCCGACAAATTTGGCTTAACAATATTGCATTTAACCTTGCCATCAAACCATGTGTGCATGCCGCGTAAGAACACCGAATAAAATCCGCTCCTTGCTGAAGTGTAACCTGGTGCTGGCTGGCTGTGGCTGTCTTCAGCTGCTGTACATGCTGTGTGCCTGGNGCTGATGATGAAATTCTACAACAACCTGTTGTTCAATGCCTGATCTGTCCTGGCTGATACCTGCCNGTGAAACTGTGCCACTGATCTTGGCTGTGTTGCTTGGTGCTGTCAATGTGGAAAGCTTGTTCCTGCCCACCTGTACCATGGACACTGTGACCTGTGTTTGCTGCACCCTGTGCTTGCTCTGTGCCATTGGGCTGTTTCAAGCAACCCTGATCTGTGCATTTTGCTGGCCTGGTGTTCTGACAATGCACTGTGGCTGAAAGGCCTGTCCAAGTGTGCCTTGCAAGCTTGAATCTGGGGGTTCCGGGGTTTTGTTGGAGACTCTGTGCTCTGTGTCACTGCCCTGAAACCTGCAGCCTGGTGGCAAATGCTGATGACCTGCTGCATTCTTTTCTGCCTTGAACTGATGTGCACCAAATGCTGATCTGTCAATCNTGGGTTACTGGGGTTCAACATGGCTGATGTGTGCCACTGGACTGTGGGTTGTATTGAACTGTGTTTACCGCTGCTGAAGTTGCCTGNTGAAACATGCGAAGCCACACTGTGACNCCATGCCTGTTGGTCTGCCCCTCCGGGGATTCAAATCTTGTGTGGCCAATGGAACCCAAANGCTTGTCTCGCTTGGGGAATTGCGAATCTGCCCTGACTAAACCGTTGCAAGGTGGGCTGTTGCACATGACTGGGTCTTCCGTGGACTGTTTGGCCCTGAGCTAATCATTGGGGTTTGATTTAAACCTGTTGAAGGCAATGGCCCCGAAAAAACATGGCCCGGAGCTTGGTGGTGANACTGAAGTTGGCANGAAGGACAAATGCAGGCCACAACTTTGCG] consensusID : consensus_2046#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence [CCGGCACACGCACACCGTGGAAACTTTCACTTTCTGCACGATTCACAAACAAGCAAAACAGTGAAGAAGTATCATCCGGTTCGGTAACGGACTCGTTTGAGCGCTCCTCCGTGTAAAGTGCATTTTTTTTTTTAATTAACGAACCTTTTCCGACAAATTTGGCTTAACAATATTGCATTTAACCTTGCCATCAAACCATGTGTGCATGCCGCGTAAGAACACCGAATAAAATCCGCTCCTTGCTGAAGGTAACCGGGCTGGCGGCGGGCGTCTTCAGCGCGTACAGCGTGTGCCGGGGCGATGAGAAATTCTACAACAACGTGTTCATGCCGATCGTCCGGCTGATACCGCCGGAAACGGCCCACGATCTGGCGGTGCTGGGCGTCAAGTGGAAGCTGTTCCGCCCACCGTACCAGGACACGGACCGGTTGCGCACCCGGCTGCTCGGCATGGCGTTCAGCAACCCGATCGGCATTGCGGCCGGGTTCGACAAGCACGGCGAAGCCGTCCAGGGGCTGCAGCTGATCGGGTTCGGGTTTGTGGAGATCGGCTCGGTCACGCCCGAACCGCAGCCGGGCAATGCGAGACCGCGCAT] [+] EMBL BM582362 [CCGGCACACGCACACCGTGGAAACTTTCACTTTCTGCACGATTCACAAACAAGCAAAACAGTGAAGAAGTATCATCCGGTTCGGTAACGGACTCGTTTGAGCGCTCCTCCGTGTAAAGTGCATTTTTTTTTTTAATTAACGAACCTTTTCCGACAAATTTGGCTTAACAATATTGCATTTAACCTTGCCATCAAACCATGTGTGCATGCCGCGTAAGAACACCGAATAAAATCCGCTCCTTGCTGAAGGTAACCGGGCTGGCGGCGGGCGTCTTCAGCGCGTACAGCGTGTGCCGGGGCGATGAGAAATTCTACAACAACGTGTTCATGCCGATCGTCCGGCTGATACCGCCGGAAACGGCCCACGATCTGGCGGTGCTGGGCGTCAAGTGGAAGCTGTTCCGCCCACCGTACCAGGACACGGACCGGTTGCGCACCCGGCTGCTCGGCATGGCGTTCAGCAACCCGATCGGCATTGCGGCCGGGTTCGACAAGCACGGCGAAGCCGTCCAGGGGCTGCAGCTGATCGGGTTCGGGTTTGTGGAGATCGGCTCGGTCACGCCCGAACCGCAGCCGGGCAATGCGAGACCGCGCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2046#0 ------------------------------------------------------------ consensus_2046#1 CCGGCACACGCACACCGTGGAAACTTTCACTTTCTGCACGATTCACAAACAAGCAAAACA 60 consensus_2046#0 ATCNA-ATGTAT-ATCCGGT-CGGTACTGGACTCGTTTGAGCTGCTCCTCCGTGTAAAGT 57 consensus_2046#1 GTGAAGAAGTATCATCCGGTTCGGTAACGGACTCGTTTGAGC-GCTCCTCCGTGTAAAGT 119 * * * **** ******* ***** ************** ***************** consensus_2046#0 GCATTTTTTTTTTTAATTAACTGAACCTTTTCCGACAAATTTGGCTTAACAATATTGCAT 117 consensus_2046#1 GCATTTTTTTTTTTAATTAAC-GAACCTTTTCCGACAAATTTGGCTTAACAATATTGCAT 178 ********************* ************************************** consensus_2046#0 TTAACCTTGCCATCAAACCATGTGTGCATGCCGCGTAAGAACACCGAATAAAATCCGCTC 177 consensus_2046#1 TTAACCTTGCCATCAAACCATGTGTGCATGCCGCGTAAGAACACCGAATAAAATCCGCTC 238 ************************************************************ consensus_2046#0 CTTGCTGAAGTGTAACCTGGTGCTGGCTGGCTGTGGCTGTCTTCAGCTGCTGTACATGCT 237 consensus_2046#1 CTTGCTGAAG-GTAACCGG------GCTGGCGGCGGGCGTCTTCAGC----GCGTACAGC 287 ********** ****** * ****** * ** ********* * * consensus_2046#0 GTGTGCCTGGNGCTGATGATGAAATTCTACAACAACCTGTTGTTCAATGCCTGATCTGTC 297 consensus_2046#1 GTGTGCCGGGG--CGATGA-GAAATTCTACAACAACGTGTT----CATGCC-GATC-GTC 338 ******* ** ***** **************** **** ***** **** *** consensus_2046#0 CTGGCTGATACCTGCCNGTGAAACTGTGCCACTGATCTTGGCTGTGTTGCTTGGTGCTGT 357 consensus_2046#1 C-GGCTGATACC-GCCGG--AAACGGC-CCAC-GATCT-GGCGGTGCTG------GGCGT 385 * ********** *** * **** * **** ***** *** *** ** * ** consensus_2046#0 CAATGTGGAAAGCTTGTTCCTGCCCACCTGTACCATGGACACTGTGACCTGTGTTTGCTG 417 consensus_2046#1 CAA-GTGGAAG--CTGTTCC-GCCCACC-GTACCA-GGACACG--GACCGGT---TGC-G 433 *** ****** ****** ******* ****** ****** **** ** *** * consensus_2046#0 CACCCTGTGCTTGCTCTGTGCCATTGGGCTGTTTCAAGCAACCCTGATCTGTGCATTTTG 477 consensus_2046#1 CACCCGGC---TGCTCGGCAT------GGCGTTC--AGCAACCC-GATCGGCA----TTG 477 ***** * ***** * * *** ******** **** * *** consensus_2046#0 CTGGCCTGGTGTTCTGACAATGCACTGTGGCTGAAAGGCCTGTCCAAGTGTGCCTTGCAA 537 consensus_2046#1 C-GGCCGGG---TTCGACAA-GCACGGCG-----AAG--CCGTCCAGGGG--CTGCAGCT 523 * **** ** * ***** **** * * *** * ***** * * * consensus_2046#0 GCTTGAATCTGGGGGTTCCGGGGTTTTGTTGGAGACTCTGTGCTCTGTGTCACTGCCCTG 597 consensus_2046#1 GATCGGGTTCGGGTTTGTGGAGATCGGCTCGGTCACGC------CCGAACCGCAGCCGGG 577 * * * * *** * * * * * ** ** * * * * * *** * consensus_2046#0 AAACCTGCAGCCTGGTGGCAAATGCTGATGACCTGCTGCATTCTTTTCTGCCTTGAACTG 657 consensus_2046#1 CAATGCGAGACCGCGCAT------------------------------------------ 595 ** * ** * consensus_2046#0 ATGTGCACCAAATGCTGATCTGTCAATCNTGGGTTACTGGGGTTCAACATGGCTGATGTG 717 consensus_2046#1 ------------------------------------------------------------ consensus_2046#0 TGCCACTGGACTGTGGGTTGTATTGAACTGTGTTTACCGCTGCTGAAGTTGCCTGNTGAA 777 consensus_2046#1 ------------------------------------------------------------ consensus_2046#0 ACATGCGAAGCCACACTGTGACNCCATGCCTGTTGGTCTGCCCCTCCGGGGATTCAAATC 837 consensus_2046#1 ------------------------------------------------------------ consensus_2046#0 TTGTGTGGCCAATGGAACCCAAANGCTTGTCTCGCTTGGGGAATTGCGAATCTGCCCTGA 897 consensus_2046#1 ------------------------------------------------------------ consensus_2046#0 CTAAACCGTTGCAAGGTGGGCTGTTGCACATGACTGGGTCTTCCGTGGACTGTTTGGCCC 957 consensus_2046#1 ------------------------------------------------------------ consensus_2046#0 TGAGCTAATCATTGGGGTTTGATTTAAACCTGTTGAAGGCAATGGCCCCGAAAAAACATG 1017 consensus_2046#1 ------------------------------------------------------------ consensus_2046#0 GCCCGGAGCTTGGTGGTGANACTGAAGTTGGCANGAAGGACAAATGCAGGCCACAACTTT 1077 consensus_2046#1 ------------------------------------------------------------ consensus_2046#0 GCG 1080 consensus_2046#1 --- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||