These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2049#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence [CCGCCCACGCGTCCGCGAAATCGCTCGTCGCAGCCGCTCGCAGTGTACAACGATCCGCGTTTAATGCCTCGAAATGAACGAAATCAACCACAAAACCGTGTTCGTGCTGGACCACACGCCCTACTTCGGCATATCGTGCGAAAGTCCGATCGACTGTGACTTTATCAAGAGCAAGGTGGCGGTCCCGCCGATCAGCAAGAGCCTGTGGACGTGCGCGGTGGAAGCGTCGGTCGAGTACTGCCGGATCGCGTACGACCTCTTTCCGGTGGGCAAGCTGATCCGGTTCGTCGTGAGCGATACGGCCGCCCACATCGTCAACACGTGGAACACGAACACGCAGAGCCTGACGCACATACTGAACGCGATGTCGATGGTGGGTGTGCCGCCGCGCCAAACGCAAGCGTCCGACTACTCGGTGATACACGGGCTGCGGGCCGCGATCGAGGCGCTGGCCGAGCCGACCGAGTTCCAGAAGGAGCAGCTGGCGGTGCACGCCAAGAGCGACTGCTTCAAGCTGGTCAACCGGGGCCGGGTGATCTGCATCACGTCGGCGCGCGATGACGCGAGCATGAAGAGCCTGGAGGACATCTTCCGCACCGTGCTGGTGCAGCAGAACGC] [+] EMBL BM639896 [CCGCCCACGCGTCCGCGAAATCGCTCGTCGCAGCCGCTCGCAGTGTACAACGATCCGCGTTTAATGCCTCGAAATGAACGAAATCAACCACAAAACCGTGTTCGTGCTGGACCACACGCCCTACTTCGGCATATCGTGCGAAAGTCCGATCGACTGTGACTTTATCAAGAGCAAGGTGGCGGTCCCGCCGATCAGCAAGAGCCTGTGGACGTGCGCGGTGGAAGCGTCGGTCGAGTACTGCCGGATCGCGTACGACCTCTTTCCGGTGGGCAAGCTGATCCGGTTCGTCGTGAGCGATACGGCCGCCCACATCGTCAACACGTGGAACACGAACACGCAGAGCCTGACGCACATACTGAACGCGATGTCGATGGTGGGTGTGCCGCCGCGCCAAACGCAAGCGTCCGACTACTCGGTGATACACGGGCTGCGGGCCGCGATCGAGGCGCTGGCCGAGCCGACCGAGTTCCAGAAGGAGCAGCTGGCGGTGCACGCCAAGAGCGACTGCTTCAAGCTGGTCAACCGGGGCCGGGTGATCTGCATCACGTCGGCGCGCGATGACGCGAGCATGAAGAGCCTGGAGGACATCTTCCGCACCGTGCTGGTGCAGCAGAACGC] consensusID : consensus_2049#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 510 fasta sequence [CCGTGCCCGCAGTGTACAACGATCCGCGTTTAATGCCTCGAAATGAACGAAATCAACCACAAAACCGTGTTCGTGCTGGACCACACGCCCTACTTCGGCATATCGTGCGAAAGTCCGATCGACTGTGACTTTATAAAGAGCAAGGTGGCGGTCCCGCCGATCAGCAAGAGCCTGTGGACGTGCGCGGTGGAAGCGTCGGTCGAGTACTGCCGGATCGCGTACGACCTCTTTCCGGTGGGCAAGCTGATCCGGTTCGTCGTGAGCGATACGGCCGCCCACATCGTCAACACGTGGAACACGAACACGCAGAGCCTGACGCACATACTGAACGCGATGTCGATGGTGGGTGTGCCGCCGCGCCAAACGCAAGCGTCCGACTATCGGATCAAGGATTTCGGCGCGCTGATGCAGCAGCACCGGCTGGTGCCGCTGAAACCGCTGCCCGAGCGGCAACCGGACGAGCATCTGCAGAAGATGCGCGGCAGGCTGGCGCGCAACTCGCGCTACTGG] [+] EMBL BM583452 [CCGTGCCCGCAGTGTACAACGATCCGCGTTTAATGCCTCGAAATGAACGAAATCAACCACAAAACCGTGTTCGTGCTGGACCACACGCCCTACTTCGGCATATCGTGCGAAAGTCCGATCGACTGTGACTTTATAAAGAGCAAGGTGGCGGTCCCGCCGATCAGCAAGAGCCTGTGGACGTGCGCGGTGGAAGCGTCGGTCGAGTACTGCCGGATCGCGTACGACCTCTTTCCGGTGGGCAAGCTGATCCGGTTCGTCGTGAGCGATACGGCCGCCCACATCGTCAACACGTGGAACACGAACACGCAGAGCCTGACGCACATACTGAACGCGATGTCGATGGTGGGTGTGCCGCCGCGCCAAACGCAAGCGTCCGACTATCGGATCAAGGATTTCGGCGCGCTGATGCAGCAGCACCGGCTGGTGCCGCTGAAACCGCTGCCCGAGCGGCAACCGGACGAGCATCTGCAGAAGATGCGCGGCAGGCTGGCGCGCAACTCGCGCTACTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2049#0 CCGCCCACGCGTCCGCGAAATCGCTCGTCGCAGCCGCTCGCAGTGTACAACGATCCGCGT 60 consensus_2049#1 ------------------------------CCGT-GCCCGCAGTGTACAACGATCCGCGT 29 * * ** ********************** consensus_2049#0 TTAATGCCTCGAAATGAACGAAATCAACCACAAAACCGTGTTCGTGCTGGACCACACGCC 120 consensus_2049#1 TTAATGCCTCGAAATGAACGAAATCAACCACAAAACCGTGTTCGTGCTGGACCACACGCC 89 ************************************************************ consensus_2049#0 CTACTTCGGCATATCGTGCGAAAGTCCGATCGACTGTGACTTTATCAAGAGCAAGGTGGC 180 consensus_2049#1 CTACTTCGGCATATCGTGCGAAAGTCCGATCGACTGTGACTTTATAAAGAGCAAGGTGGC 149 ********************************************* ************** consensus_2049#0 GGTCCCGCCGATCAGCAAGAGCCTGTGGACGTGCGCGGTGGAAGCGTCGGTCGAGTACTG 240 consensus_2049#1 GGTCCCGCCGATCAGCAAGAGCCTGTGGACGTGCGCGGTGGAAGCGTCGGTCGAGTACTG 209 ************************************************************ consensus_2049#0 CCGGATCGCGTACGACCTCTTTCCGGTGGGCAAGCTGATCCGGTTCGTCGTGAGCGATAC 300 consensus_2049#1 CCGGATCGCGTACGACCTCTTTCCGGTGGGCAAGCTGATCCGGTTCGTCGTGAGCGATAC 269 ************************************************************ consensus_2049#0 GGCCGCCCACATCGTCAACACGTGGAACACGAACACGCAGAGCCTGACGCACATACTGAA 360 consensus_2049#1 GGCCGCCCACATCGTCAACACGTGGAACACGAACACGCAGAGCCTGACGCACATACTGAA 329 ************************************************************ consensus_2049#0 CGCGATGTCGATGGTGGGTGTGCCGCCGCGCCAAACGCAAGCGTCCGACTACTCGGTGAT 420 consensus_2049#1 CGCGATGTCGATGGTGGGTGTGCCGCCGCGCCAAACGCAAGCGTCCGACTATCGGAT--- 386 *************************************************** * * consensus_2049#0 ACACGGGCTGCGGGCCGCGATCGAGGCGCTGGCCGAGCCGACCGAGTTCCAGAAGGAGCA 480 consensus_2049#1 -CAAGGATT-----------TCGGCGCGCTGATGCAGC------AGCACCGGCTGGTGCC 428 ** ** * *** ****** *** ** ** * ** ** consensus_2049#0 GCTGGCGGTGCACGCCAAGAGCGACTGCTTCAAGCTGGTCAACCGGGGCCGGGTGATCTG 540 consensus_2049#1 GCTGAAACCGCTGCCC--GAGCGGC-------AACCGGACGAGCATCTGCAGAAGATGCG 479 **** ** ** ***** * * * ** * * * * * *** * consensus_2049#0 CATCACGTCGGCGCGCGATGACGCGAGCATGAAGAGCCTGGAGGACATCTTCCGCACCGT 600 consensus_2049#1 CGGCAGGCTGGCGCGCAACT-CGCGCTACTGG---------------------------- 510 * ** * ******* * **** ** consensus_2049#0 GCTGGTGCAGCAGAACGC 618 consensus_2049#1 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||