These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2064#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 719 fasta sequence [ATCCGCCNAGGTTAATTGTTGAAGGAACAGTGTANCTATAGAACTGTTTAGCTTTAAATCGTTTCCGCGTTGATTTGATGCCTTGCCTTGGTTTCAAGTTTGGTTCATAGATGTTTTGTATTTTCGTAACTCCTGTACTGGCGTTAAAAAACGGAAATGGATCTGGTGTTGTTAGGACCAGGCAAACAACCACATAGGCAAGACGGGCTTAACTTACTTTAGCGTTATGGGGGAACTTTTGTATAGCACCGTTCCGCGTACCGGCTTTTTTCCCTTTTCCCATTGAATTGGCCTTGGACCGGCGGAACACAAAACGTNTACCGNACATGGCCCAATGGAGCGGACTGCAATGGCTTGACCGGAACTTAGCACACTTGTACTTGGCGTTATAACCCCAGTTANCCGGGTTAGACCCGCCGTTTTTCCGGGGANTTACCGTTTACCAAATTACCAAATTTCCCCCCGGAAGGAGGGAAAAAAGAACCCCTTGGAGACAACAACGTGGGGGGCTTTTTATCTAAAACAAGAAGCGTTGCCGTTAACCGAGAAGGAGCAGCATAAAAGGAAGAGAACACCCGGACCCCCGGCAAGTTTCCTGGTCCCCCCCGGGTAAGTCCCGAATTCCAGGGGTGGAGCCAACCTAGGGGGCGCCACANGCGAAAAGTTCCCAAGAAGACAAGAATTGTTATGCCCCCCAAGCCGTATGAAGATAGGANGCC] [+] EMBL AL932416 [ATCCGCCNAGGTTAATTGTTGAAGGAACAGTGTANCTATAGAACTGTTTAGCTTTAAATCGTTTCCGCGTTGATTTGATGCCTTGCCTTGGTTTCAAGTTTGGTTCATAGATGTTTTGTATTTTCGTAACTCCTGTACTGGCGTTAAAAAACGGAAATGGATCTGGTGTTGTTAGGACCAGGCAAACAACCACATAGGCAAGACGGGCTTAACTTACTTTAGCGTTATGGGGGAACTTTTGTATAGCACCGTTCCGCGTACCGGCTTTTTTCCCTTTTCCCATTGAATTGGCCTTGGACCGGCGGAACACAAAACGTNTACCGNACATGGCCCAATGGAGCGGACTGCAATGGCTTGACCGGAACTTAGCACACTTGTACTTGGCGTTATAACCCCAGTTANCCGGGTTAGACCCGCCGTTTTTCCGGGGANTTACCGTTTACCAAATTACCAAATTTCCCCCCGGAAGGAGGGAAAAAAGAACCCCTTGGAGACAACAACGTGGGGGGCTTTTTATCTAAAACAAGAAGCGTTGCCGTTAACCGAGAAGGAGCAGCATAAAAGGAAGAGAACACCCGGACCCCCGGCAAGTTTCCTGGTCCCCCCCGGGTAAGTCCCGAATTCCAGGGGTGGAGCCAACCTAGGGGGCGCCACANGCGAAAAGTTCCCAAGAAGACAAGAATTGTTATGCCCCCCAAGCCGTATGAAGATAGGANGCC] consensusID : consensus_2064#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 192 fasta sequence [ACCTTATTTGGTTCGGCTTTGAAGAGACTGTGGCGCGAAAACGGAAAAGACTCTAGTATTTGAATGAGTGGAGAGGGATTGTTGAAGGAACAGTGTAGTATAGAACTGTTTAGCTTTAAATCGTTTCCGCGTTGATTTGATGCCTTGCTTGTTCAGTTTGTTCATAGATGTTTTGTATTTTCGTAACTCCTG] [+] EMBL BX611229 [ACCTTATTTGGTTCGGCTTTGAAGAGACTGTGGCGCGAAAACGGAAAAGACTCTAGTATTTGAATGAGTGGAGAGGGATTGTTGAAGGAACAGTGTAGTATAGAACTGTTTAGCTTTAAATCGTTTCCGCGTTGATTTGATGCCTTGCTTGTTCAGTTTGTTCATAGATGTTTTGTATTTTCGTAACTCCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2064#0 ------------------------------------------------------------ consensus_2064#1 ACCTTATTTGGTTCGGCTTTGAAGAGACTGTGGCGCGAAAACGGAAAAGACTCTAGTATT 60 consensus_2064#0 ---ATCCGCCNAGGTTAATTGTTGAAGGAACAGTGTANCTATAGAACTGTTTAGCTTTAA 57 consensus_2064#1 TGAATGAGTGGAGAGGGATTGTTGAAGGAACAGTGTAG-TATAGAACTGTTTAGCTTTAA 119 ** * ** ******************** ********************* consensus_2064#0 ATCGTTTCCGCGTTGATTTGATGCCTTGCCTTGGTTTCAAGTTTGGTTCATAGATGTTTT 117 consensus_2064#1 ATCGTTTCCGCGTTGATTTGATGCCTTGCTT--GTTC--AGTTTG-TTCATAGATGTTTT 174 ***************************** * *** ****** ************** consensus_2064#0 GTATTTTCGTAACTCCTGTACTGGCGTTAAAAAACGGAAATGGATCTGGTGTTGTTAGGA 177 consensus_2064#1 GTATTTTCGTAACTCCTG------------------------------------------ 192 ****************** consensus_2064#0 CCAGGCAAACAACCACATAGGCAAGACGGGCTTAACTTACTTTAGCGTTATGGGGGAACT 237 consensus_2064#1 ------------------------------------------------------------ consensus_2064#0 TTTGTATAGCACCGTTCCGCGTACCGGCTTTTTTCCCTTTTCCCATTGAATTGGCCTTGG 297 consensus_2064#1 ------------------------------------------------------------ consensus_2064#0 ACCGGCGGAACACAAAACGTNTACCGNACATGGCCCAATGGAGCGGACTGCAATGGCTTG 357 consensus_2064#1 ------------------------------------------------------------ consensus_2064#0 ACCGGAACTTAGCACACTTGTACTTGGCGTTATAACCCCAGTTANCCGGGTTAGACCCGC 417 consensus_2064#1 ------------------------------------------------------------ consensus_2064#0 CGTTTTTCCGGGGANTTACCGTTTACCAAATTACCAAATTTCCCCCCGGAAGGAGGGAAA 477 consensus_2064#1 ------------------------------------------------------------ consensus_2064#0 AAAGAACCCCTTGGAGACAACAACGTGGGGGGCTTTTTATCTAAAACAAGAAGCGTTGCC 537 consensus_2064#1 ------------------------------------------------------------ consensus_2064#0 GTTAACCGAGAAGGAGCAGCATAAAAGGAAGAGAACACCCGGACCCCCGGCAAGTTTCCT 597 consensus_2064#1 ------------------------------------------------------------ consensus_2064#0 GGTCCCCCCCGGGTAAGTCCCGAATTCCAGGGGTGGAGCCAACCTAGGGGGCGCCACANG 657 consensus_2064#1 ------------------------------------------------------------ consensus_2064#0 CGAAAAGTTCCCAAGAAGACAAGAATTGTTATGCCCCCCAAGCCGTATGAAGATAGGANG 717 consensus_2064#1 ------------------------------------------------------------ consensus_2064#0 CC 719 consensus_2064#1 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||