These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2067#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1276 fasta sequence [TCATGCCAAGAATCCGAGGTNATTTAGATCTGGATCCAGATGATCGACGCGACGAAACACGTAACTTCCAGCGCGCTGAGAGTGCGTATAACTACGTGGAAGCAAATATTGATACCACAGGAATCAAACGAGAGCCATATGCGCTGCGGGACATACCTACGAATGTTTCACACGAATAGAACACACTGCAAGGGATTGGGCCACTACGAACGCGCTACAACCAGCTTAGCGCTCAGAGTAATNGCGCNTGGCGTGATTGCTGNGGGGAACCTGGTNTCCNGGGCCCACCATTGCAGTANNATGGGGCACTNTCTTTTAAACCGGGCCTGGTATTNNCTTAAACACCTTTGTGCCTTAGGNGAACCGTATATNGNGGGNGCATACAATAGGTATCATCACTGCGTCACTTTTAACCCGTGGGCGGAAACCGAATTATAAAACCCCGNGGTAAGNACAACNAAGAAATAAGACCNGANATGGANGNGCNAGTTNAAACACCAGCTACGTNGGAAGAAAAAAAACATATACCCGGNCGCCAAGNGAGNGACGGCNCNCCGGANTTACATNCGGCATATTGGGGGNGGCCGCCGCCCNACCACAANCGATACCACGCGAGNNGCGCCAGCAGGACAGNAACACACAAGGGGGCACGAGAAACCCCCACCANAGGCGCCACAGAGCCGGCGNACACACAACAGGGAACGAACACAACAACACCGGCACCAAAGGGGCAGAAAAAACCACAGCGAACAAAGAGGCACCAGGCACACCATAGGCCAACATNCCCGGANAAACAACGCCAAAAACAAGGGANCACANNCAAANAAACCACCGGACAGCATCACANACAGACACAACGNCGGCCCACACGGGCAACACACACCACGANGGGTANAAACCATCACGAAACAACAANATATCATAAACAANAAATNAACNCCANCACAAAACACAAACAAGGGAANAAAACAACAAACCCANAANAAAGAAGGCNGAGAAACACGAAGNACAAAACAAACGAGACCACCCACACACANCAGCAGCAATAGNGANTAAACACCACNAGAGACGANCAGACAGNCAAAAGCANAACGAGGAGACGACCNCGACGGGANCAAACAAACCACGAAGGGNAACAACGCGAGNAAGCCCACCAAAAACCGNACCNCGCACGAACAGCAAACCAAAAGGGNGGANACCCCCAGACAGGAAAANNGACCAGCTAACCCNGAACAACCAAGAGCAACGNCGCAACCAAAAGGAGAGTCAAACAAGA] [+] EMBL AL695542 [TCATGCCAAGAATCCGAGGTNATTTAGATCTGGATCCAGATGATCGACGCGACGAAACACGTAACTTCCAGCGCGCTGAGAGTGCGTATAACTACGTGGAAGCAAATATTGATACCACAGGAATCAAACGAGAGCCATATGCGCTGCGGGACATACCTACGAATGTTTCACACGAATAGAACACACTGCAAGGGATTGGGCCACTACGAACGCGCTACAACCAGCTTAGCGCTCAGAGTAATNGCGCNTGGCGTGATTGCTGNGGGGAACCTGGTNTCCNGGGCCCACCATTGCAGTANNATGGGGCACTNTCTTTTAAACCGGGCCTGGTATTNNCTTAAACACCTTTGTGCCTTAGGNGAACCGTATATNGNGGGNGCATACAATAGGTATCATCACTGCGTCACTTTTAACCCGTGGGCGGAAACCGAATTATAAAACCCCGNGGTAAGNACAACNAAGAAATAAGACCNGANATGGANGNGCNAGTTNAAACACCAGCTACGTNGGAAGAAAAAAAACATATACCCGGNCGCCAAGNGAGNGACGGCNCNCCGGANTTACATNCGGCATATTGGGGGNGGCCGCCGCCCNACCACAANCGATACCACGCGAGNNGCGCCAGCAGGACAGNAACACACAAGGGGGCACGAGAAACCCCCACCANAGGCGCCACAGAGCCGGCGNACACACAACAGGGAACGAACACAACAACACCGGCACCAAAGGGGCAGAAAAAACCACAGCGAACAAAGAGGCACCAGGCACACCATAGGCCAACATNCCCGGANAAACAACGCCAAAAACAAGGGANCACANNCAAANAAACCACCGGACAGCATCACANACAGACACAACGNCGGCCCACACGGGCAACACACACCACGANGGGTANAAACCATCACGAAACAACAANATATCATAAACAANAAATNAACNCCANCACAAAACACAAACAAGGGAANAAAACAACAAACCCANAANAAAGAAGGCNGAGAAACACGAAGNACAAAACAAACGAGACCACCCACACACANCAGCAGCAATAGNGANTAAACACCACNAGAGACGANCAGACAGNCAAAAGCANAACGAGGAGACGACCNCGACGGGANCAAACAAACCACGAAGGGNAACAACGCGAGNAAGCCCACCAAAAACCGNACCNCGCACGAACAGCAAACCAAAAGGGNGGANACCCCCAGACAGGAAAANNGACCAGCTAACCCNGAACAACCAAGAGCAACGNCGCAACCAAAAGGAGAGTCAAACAAGA] consensusID : consensus_2067#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 760 fasta sequence [GGCTGCGACCGATGCCGGGAGGGTGACGCTACGTTCGAGGAGCGTTTCAACATGATCTGCTGTCCCGCCTGTCGCCGGGAGTACTCGAAGGAGCTGAACCTGGAGGAACTGCCAACAGTGTGTGTGTACTGTTCGGCGGAAATTCCCTCCGAATGGTTAAGCCAAATTTTGGATCTGGATCCAGATGATCGTCGCGACGAAACACGTAACTTCCAGCGCGCTGAGAGTGCGTATAACTACGGCAAGCAAATATTGATCCACAGCAATCAAACGAGAGCCATTGCGCTGCGGCACATCCTCGAATGTTTCACACGAATAGCCACCTGCAAGGGATTGGCCCACTCGAACGCGCTCAACCAGCTAGCGCTAGAGTATGCGCTGCTAATGCGGGAACGGTTCGGTCACATGAGTTTGGAATTTTTAACCGGCTGTTTCTACCTGCTGGACGTTTGGGCTATGTTTTGCTATTACGGCGACGATGAACCGGAGCAGCAGGCCGAGGAGCGTACCGTGCTGAAACAGTTCCGCCAGGCGCTCGCTATGATTGGCGCCGACAATCGGGGGCAGATTTTGGATTACATGCAGCGGTACAAGATAATCGACGGGGAATCGATGGCAGAATGCATCGAAACAATGGAGCAAACGGCTTAATAACGCTTTGTTTTTTTTTTTGTAATTCAAATTTTAATTTCCTTTTCTTTGCTTCACCAACGGTTCGCGCATCGCCGGTGAGTGGTTACATTGTTTTTGTTTCGGGCGC] [+] EMBL BX608716 [GGCTGCGACCGATGCCGGGAGGGTGACGCTACGTTCGAGGAGCGTTTCAACATGATCTGCTGTCCCGCCTGTCGCCGGGAGTACTCGAAGGAGCTGAACCTGGAGGAACTGCCAACAGTGTGTGTGTACTGTTCGGCGGAAATTCCCTCCGAATGGTTAAGCCAAATTTTGGATCTGGATCCAGATGATCGTCGCGACGAAACACGTAACTTCCAGCGCGCTGAGAGTGCGTATAACTACGGCAAGCAAATATTGATCCACAGCAATCAAACGAGAGCCATTGCGCTGCGGCACATCCTCGAATGTTTCACACGAATAGCCACCTGCAAGGGATTGGCCCACTCGAACGCGCTCAACCAGCTAGCGCTAGAGTATGCGCTGCTAATGCGGGAACGGTTCGGTCACATGAGTTTGGAATTTTTAACCGGCTGTTTCTACCTGCTGGACGTTTGGGCTATGTTTTGCTATTACGGCGACGATGAACCGGAGCAGCAGGCCGAGGAGCGTACCGTGCTGAAACAGTTCCGCCAGGCGCTCGCTATGATTGGCGCCGACAATCGGGGGCAGATTTTGGATTACATGCAGCGGTACAAGATAATCGACGGGGAATCGATGGCAGAATGCATCGAAACAATGGAGCAAACGGCTTAATAACGCTTTGTTTTTTTTTTTGTAATTCAAATTTTAATTTCCTTTTCTTTGCTTCACCAACGGTTCGCGCATCGCCGGTGAGTGGTTACATTGTTTTTGTTTCGGGCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2067#0 TCATGCCAAGAATCCGAGGTNATTTAGATCTGGATCCAGATGATCGACGCGACGAAACAC 60 consensus_2067#1 ------------------------------------------------------------ consensus_2067#0 GTAACTTCCAGCGCGCTGAGAGTGCGTATAACTACGTGGAAGCAAATATTGATACCACAG 120 consensus_2067#1 ------------------------------------------------------------ consensus_2067#0 GAATCAAACGAGAGCCATATGCGCTGCGGGACATACCTACGAATGTTTCACACGAATAGA 180 consensus_2067#1 ------------------------------------------------------------ consensus_2067#0 ACACACTGCAAGGGATTGGGCCACTACGAACGCGCTACAACCAGCTTAGCGCTCAGAGTA 240 consensus_2067#1 ------------------------------------------------------------ consensus_2067#0 ATNGCGCNTGGCGTGATTGCTGNGGGGAACCTGGTNTCCNGGGCCCACCATTGCAGTANN 300 consensus_2067#1 ---------------------------------------GGCTGCGACCGATGCCG-GGA 20 * * *** *** * consensus_2067#0 ATGGGGCACTNTCTTTTAAACCGGGCCTGGTATTNNCTTAAACACCTTTGTGCCTTAGGN 360 consensus_2067#1 GGGTGACGCTACGTTCGAGGAGCGTTTCAACATGATCTGCTGT-CCCGCCTGTCGCCGGG 79 * * * ** ** * * ** ** ** ** * ** consensus_2067#0 GAACCGTATATNGNGGGNGCATACAATAGGTATCATCACTGCGTCACTTTTAACCCGTGG 420 consensus_2067#1 AGTACTCGAAGGAGCTGAACCTGGAGGAACTGCCAACAGTGTGTGTGT----ACTGTTCG 135 * * * * * * * * ** ** ** ** * ** * * consensus_2067#0 GCGGAAACCGAATTATAAAACCCCGNGGTAAGNACAACNAAGAAATAAGACCNGANATGG 480 consensus_2067#1 GCGGAAATTCCCTCCGAAT------GGTTAAGCCAAATTTTGGATCTGGATCC-AGATGA 188 ******* * ** * **** ** * * ** * * *** consensus_2067#0 ANGNGCNAGTTNAAACAC-CAGCTACGTNGGAAGAAAAAAAACATATACCCGGNCGCCAA 539 consensus_2067#1 TCGT-CGCGACGAAACACGTAACTTCCAGCGCGCTGAGAGTGCGTATAACT--ACGGCAA 245 * * * ****** * ** * * * * * **** * ** *** consensus_2067#0 GNGAGNGACGGCNCNCCGGANTTACATNCGGCATATTGGGGGNGGCCGCCGCCCNACCAC 599 consensus_2067#1 GCAAATATTGATCCACAGCAATCAAACGAGAGCCATTGC-----GCTGCGGCACATCCTC 300 * * * * * * * * * * * **** ** ** ** * ** * consensus_2067#0 AANCGATACCACGCGAGNNGC-GCCAGCAGGACAGNAACACACAAGGGGGCACGAGAAAC 658 consensus_2067#1 GAATG-TTTCACACGAATAGCCACCTGCAAGGGATTGGCCCACTCGAACGCGC------- 352 * * * *** *** ** ** *** * * * *** * ** * consensus_2067#0 CCCCACCANAGGCGCCACAGAGCCGGCGNACACACAACAGGGAACGAACACAACAACACC 718 consensus_2067#1 -TCAACCAGC-------TAGCGCTAGAGTATGCGCTGCT-------AATGCGGGAACGGT 397 * **** ** ** * * * * * * ** * *** consensus_2067#0 GGCACCAAAGGGGCAGAAAAAACCACAGCGAACAAAGAGGCACCAGGCACACCATAGGCC 778 consensus_2067#1 TCGGTCACATGAGTTTGGAATTTTTAACCGGCTGTTT--CTACCTGCTGGACGTTTGGGC 455 ** * * * ** * ** *** * ** * ** * consensus_2067#0 AACATNCCCGGANAAACAACGCCAAAAACAAGGGANCACANNCAAANAAACCACCGGACA 838 consensus_2067#1 TATGTTTT-GCTATTACGGCGACGATGAACCGGAGCAGCAGGCCGAGGAGC----GTACC 510 * * * ** ** * * * ** ** * * * * * ** consensus_2067#0 GCATCACANACAGACACAACGNCGGCCCAC-ACGGGCAACACACACCACGANGGGTANAA 897 consensus_2067#1 GTGCTG-AAACAGTTCCGCCAGGCGCTCGCTATGATTGGCGCCGACAATCGGGGGCAGAT 569 * * **** * * ** * * * * * * ** * *** * * consensus_2067#0 ACC--ATCACGAAACAACAANATATCATAAACAANAAATNAACNCCANCACAAAACACAA 955 consensus_2067#1 TTTGGATTAC-ATGCAGCGGTACAAGATAATCGACGGGGAATCGATGGCAGAATGCATCG 628 ** ** * ** * * * **** * * * * ** ** ** consensus_2067#0 ACAAGGGAANAAAACAACAAACCCANAANAAAGAAGGCNGAGAAACACGAAGNACAAAAC 1015 consensus_2067#1 A------AACAATGGAGCAAAC---GGCTTAATAACGCTTTGTTTTTTTTTTTGTAATTC 679 * ** ** * ***** ** ** ** * ** * consensus_2067#0 AAACGA-GACCACCCACACACANCAGCAGCAATAGNGANTAAACACCACNAGAGA-CGAN 1073 consensus_2067#1 AAATTTTAATTTCCTTTTCTTTGCTTCACCAACGGT--TCGCGCATCGCCGGTGAGTGGT 737 *** * ** * * ** *** * ** * * * ** * consensus_2067#0 CAGACAGNCAAAAGCANAACGAGGAGACGACCNCGACGGGANCAAACAAACCACGAAGGG 1133 consensus_2067#1 TACATTGTTTTTGTTTCGGGCGC------------------------------------- 760 * * * consensus_2067#0 NAACAACGCGAGNAAGCCCACCAAAAACCGNACCNCGCACGAACAGCAAACCAAAAGGGN 1193 consensus_2067#1 ------------------------------------------------------------ consensus_2067#0 GGANACCCCCAGACAGGAAAANNGACCAGCTAACCCNGAACAACCAAGAGCAACGNCGCA 1253 consensus_2067#1 ------------------------------------------------------------ consensus_2067#0 ACCAAAAGGAGAGTCAAACAAGA 1276 consensus_2067#1 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||