These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2068#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 639 fasta sequence [AGGCAAGAATCGCCCGAGGTTATCGTGTCGCGCATTAGCTCGCTGCGTGTTTACTACCNGAACGATCTGCGCCCGGCAGACAATCGCCGCTCGGTGCTGAAAACGATCGAGGAGGTGAAGAAGCGTTTCCCGCAGGGTACCGCCACTGCTGAACCCGATCACCGATATGCACATCAAGGAGAAGGAGTTCCAGGGCATAGTGGACATGATCGACAAGTTCGAGAAGCGCCTGTTCGCCACCCGTGCACGAGTCGGCCGGGCTCGAGCGGCTGTACGCGCAGTACATGAGCAAGCTGGAGCTGGAGAAGGAGCTGCGCAACGAGNAAGAATGCGCTGCGTGAAGCGCGCAGCCTGCTGCAGATGAGCGAGCTGAAGCACCGGAAGCGGGTGCTGCGACGATTGGGCTACTGTACGGCGGCGGACGTGATCGAGTTCAAGGGGCGCGTTGCGTGCGAGCTGAGCTGCGCGGACGAGCTGCTCATCACCGACAATGGTGTTTAACGGTACGTTTACCGACCTGACGCCGTCGCAATCGTGCGCCCTGCTGAGCTGCATTCAGTGTGCGATGAGAAGAGCAGCGAAATGCCGGCCAGCAGACCCAAGAGCATGTCCGGTCCGCATGCGACAGAATGCAGGATC] [+] EMBL AL695547 [AGGCAAGAATCGCCCGAGGTTATCGTGTCGCGCATTAGCTCGCTGCGTGTTTACTACCNGAACGATCTGCGCCCGGCAGACAATCGCCGCTCGGTGCTGAAAACGATCGAGGAGGTGAAGAAGCGTTTCCCGCAGGGTACCGCCACTGCTGAACCCGATCACCGATATGCACATCAAGGAGAAGGAGTTCCAGGGCATAGTGGACATGATCGACAAGTTCGAGAAGCGCCTGTTCGCCACCCGTGCACGAGTCGGCCGGGCTCGAGCGGCTGTACGCGCAGTACATGAGCAAGCTGGAGCTGGAGAAGGAGCTGCGCAACGAGNAAGAATGCGCTGCGTGAAGCGCGCAGCCTGCTGCAGATGAGCGAGCTGAAGCACCGGAAGCGGGTGCTGCGACGATTGGGCTACTGTACGGCGGCGGACGTGATCGAGTTCAAGGGGCGCGTTGCGTGCGAGCTGAGCTGCGCGGACGAGCTGCTCATCACCGACAATGGTGTTTAACGGTACGTTTACCGACCTGACGCCGTCGCAATCGTGCGCCCTGCTGAGCTGCATTCAGTGTGCGATGAGAAGAGCAGCGAAATGCCGGCCAGCAGACCCAAGAGCATGTCCGGTCCGCATGCGACAGAATGCAGGATC] consensusID : consensus_2068#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence [AGGCAAGAATCGGNCGAGGTGATTAAGCTGGAGCTGGAGAAGGAGCTGCGCAACGAGAAGAATGCGCTGCGTGAAGCGCGCAGCCTGCTGCAGATGAGCGAGCTGAAGCACCGGAAGCGGGTGCTGCGACGATTGGGCTACTGTACGGCGGCGGACGTGATCGAGTTCAAGGGGCGCGTAGCGTGCGAGCTGAGCTGCGCGGACGAGCTGCTCATCACCGAGATGGTGTTTAACGGTACGTTTACCGACCTGACGCCGTCGCAATCGTGCGCCCTGCTGAGCTGCTTCGTGTGCGATGAGAAGAGCAGCGAAATGCCGGCAGCGACCCACGAGCTGTCCGGTCCGCTGCGACAGATGCAGGATCTGGCGCGGCGCATTGCGAAGGTGTCGAACGAGTGCAAGGTGGAGGTGGACGAGGAGCGCTACGTGGAATCGTTCAAACCGTTCCTGATGGATGTGGTACTGTGCTAGGTGCAAGGGCGCCTCGTTCGCGCAGCTCTGCAAGATGACGGACATCTTCGAGGGCTCCAGTCATTCGCTGTATGCGCCGGCTGGAGGAGCTGCTGCGCCAGATGGTGCAGGCGTCGAAGACGATCGGCAACACGGATC] [+] EMBL BX466335 [AGGCAAGAATCGGNCGAGGTGATTAAGCTGGAGCTGGAGAAGGAGCTGCGCAACGAGAAGAATGCGCTGCGTGAAGCGCGCAGCCTGCTGCAGATGAGCGAGCTGAAGCACCGGAAGCGGGTGCTGCGACGATTGGGCTACTGTACGGCGGCGGACGTGATCGAGTTCAAGGGGCGCGTAGCGTGCGAGCTGAGCTGCGCGGACGAGCTGCTCATCACCGAGATGGTGTTTAACGGTACGTTTACCGACCTGACGCCGTCGCAATCGTGCGCCCTGCTGAGCTGCTTCGTGTGCGATGAGAAGAGCAGCGAAATGCCGGCAGCGACCCACGAGCTGTCCGGTCCGCTGCGACAGATGCAGGATCTGGCGCGGCGCATTGCGAAGGTGTCGAACGAGTGCAAGGTGGAGGTGGACGAGGAGCGCTACGTGGAATCGTTCAAACCGTTCCTGATGGATGTGGTACTGTGCTAGGTGCAAGGGCGCCTCGTTCGCGCAGCTCTGCAAGATGACGGACATCTTCGAGGGCTCCAGTCATTCGCTGTATGCGCCGGCTGGAGGAGCTGCTGCGCCAGATGGTGCAGGCGTCGAAGACGATCGGCAACACGGATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2068#0 AGGCAAGAATCGCCCGAGGTTATCGTGTCGCGCATTAGCTCGCTGCGTGTTTACTACCNG 60 consensus_2068#1 ------------------------------------------------------------ consensus_2068#0 AACGATCTGCGCCCGGCAGACAATCGCCGCTCGGTGCTGAAAACGATCGAGGAGGTGAAG 120 consensus_2068#1 ------------------------------------------------------------ consensus_2068#0 AAGCGTTTCCCGCAGGGTACCGCCACTGCTGAACCCGATCACCGATATGCACATCAAGGA 180 consensus_2068#1 ------------------------------------------------------------ consensus_2068#0 GAAGGAGTTCCAGGGCATAGTGGACATGATCGACAAGTTCGAGAAGCGCCTGTTCGCCAC 240 consensus_2068#1 ------------------------------------------------------------ consensus_2068#0 CCGTGCACGAGTCGGCCGGGCTCGAGCGGCTGTACGCGCAGTACATGAGCAAGCTGGAGC 300 consensus_2068#1 --------------------------AGGCAAGAATCGGNCGAGGTGATTAAGCTGGAGC 34 *** * ** * *** ********** consensus_2068#0 TGGAGAAGGAGCTGCGCAACGAGNAAGAATGCGCTGCGTGAAGCGCGCAGCCTGCTGCAG 360 consensus_2068#1 TGGAGAAGGAGCTGCGCAACGAGAA-GAATGCGCTGCGTGAAGCGCGCAGCCTGCTGCAG 93 *********************** * ********************************** consensus_2068#0 ATGAGCGAGCTGAAGCACCGGAAGCGGGTGCTGCGACGATTGGGCTACTGTACGGCGGCG 420 consensus_2068#1 ATGAGCGAGCTGAAGCACCGGAAGCGGGTGCTGCGACGATTGGGCTACTGTACGGCGGCG 153 ************************************************************ consensus_2068#0 GACGTGATCGAGTTCAAGGGGCGCGTTGCGTGCGAGCTGAGCTGCGCGGACGAGCTGCTC 480 consensus_2068#1 GACGTGATCGAGTTCAAGGGGCGCGTAGCGTGCGAGCTGAGCTGCGCGGACGAGCTGCTC 213 ************************** ********************************* consensus_2068#0 ATCACCGACAATGGTGTTTAACGGTACGTTTACCGACCTGACGCCGTCGCAATCGTGCGC 540 consensus_2068#1 ATCACCGA-GATGGTGTTTAACGGTACGTTTACCGACCTGACGCCGTCGCAATCGTGCGC 272 ******** ************************************************** consensus_2068#0 CCTGCTGAGCTGCATTCAGTGTGCGATGAGAAGAGCAGCGAAATGCCGGCCAGCAGACCC 600 consensus_2068#1 CCTGCTGAGCTGCTTC--GTGTGCGATGAGAAGAGCAGCGAAATGCCGGC-AGC-GACCC 328 ************* * ******************************** *** ***** consensus_2068#0 AAGAGCATGTCCGGTCCGCATGCGACAGAATGCAGGATC--------------------- 639 consensus_2068#1 ACGAGC-TGTCCGGTCCGC-TGCGACAGA-TGCAGGATCTGGCGCGGCGCATTGCGAAGG 385 * **** ************ ********* ********* consensus_2068#0 ------------------------------------------------------------ consensus_2068#1 TGTCGAACGAGTGCAAGGTGGAGGTGGACGAGGAGCGCTACGTGGAATCGTTCAAACCGT 445 consensus_2068#0 ------------------------------------------------------------ consensus_2068#1 TCCTGATGGATGTGGTACTGTGCTAGGTGCAAGGGCGCCTCGTTCGCGCAGCTCTGCAAG 505 consensus_2068#0 ------------------------------------------------------------ consensus_2068#1 ATGACGGACATCTTCGAGGGCTCCAGTCATTCGCTGTATGCGCCGGCTGGAGGAGCTGCT 565 consensus_2068#0 -------------------------------------------- consensus_2068#1 GCGCCAGATGGTGCAGGCGTCGAAGACGATCGGCAACACGGATC 609 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||