These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2076#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence [CCGGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAAAGAGAAATAGAGAGAGAGAAAGAGATAGAAGAGAGAGAGAAAGAGAGAAAGAGAAAGAAGAGAGAGAGAAAGAGAGAGAGAGAAAGAAAGAGAGAAAGAAGAGAGAGAAAGAGAGAGAAAGAGAGAGAAAGAGAGAGAAAGAAGAGAGAGAAAGAGAGAGAAAGAAAGAGAGAAAGAAGAAAGAGAAAGGAGAGAGAAAAAAAGAGAGGAAAAAAGAGAGAGAAAAGAGAAGGGAGAGAGAGAGAAAGATGATTTTTGTTCTTATATTCATTTAATTACTGTTTCACCTTTCTTTATTATCGACCCGTCGCTACTAGTTAGTGACGCAAAGAATTACCATTTCAACTGCAACCTTGAAAGGCGGAAGCAACAAAAGAAAGGGGGATGTCCTCTATTAAGTGTTAAACACGCCCCAACGCCCCCCGTCGTTACCTACTTTTTTGTATTTTTTTTTGCGCTTTACTTTCAATCGATACAGTTCTTCCTGCCACGCGCGCTCCCTCCCTCCCTACACATTGCTGACAACTAATTCGAAGCTCT] [+] EMBL BM601304 [CCGGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAAAGAGAAATAGAGAGAGAGAAAGAGATAGAAGAGAGAGAGAAAGAGAGAAAGAGAAAGAAGAGAGAGAGAAAGAGAGAGAGAGAAAGAAAGAGAGAAAGAAGAGAGAGAAAGAGAGAGAAAGAGAGAGAAAGAGAGAGAAAGAAGAGAGAGAAAGAGAGAGAAAGAAAGAGAGAAAGAAGAAAGAGAAAGGAGAGAGAAAAAAAGAGAGGAAAAAAGAGAGAGAAAAGAGAAGGGAGAGAGAGAGAAAGATGATTTTTGTTCTTATATTCATTTAATTACTGTTTCACCTTTCTTTATTATCGACCCGTCGCTACTAGTTAGTGACGCAAAGAATTACCATTTCAACTGCAACCTTGAAAGGCGGAAGCAACAAAAGAAAGGGGGATGTCCTCTATTAAGTGTTAAACACGCCCCAACGCCCCCCGTCGTTACCTACTTTTTTGTATTTTTTTTTGCGCTTTACTTTCAATCGATACAGTTCTTCCTGCCACGCGCGCTCCCTCCCTCCCTACACATTGCTGACAACTAATTCGAAGCTCT] consensusID : consensus_2076#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 527 fasta sequence [CCGCGGACGCGTGGGCGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAGAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAGAGAAAGAAGAGAGAAAGAAGAGAGAGAGGAAGAAGAGAGAGAAAGAAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAAAGAGAAAGAAGAGAGAAAGAGAGATAGAGAGAGAGAGAAAAAAGAGAGCGATGATTTTTTTCTTATATTCGTTTAATTACTGTTTCACCTTTCTCTATTATCGACCCGTCGCTACTAATTAGTGACGCAAAGAATTACCATTTCAACTGCAACCTTGAAAGGTGGAAGCAACAAAGGAAAAGGGGGGTGTCCTCTATTAAGTGTTAA] [+] EMBL BM612529 [CCGCGGACGCGTGGGCGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAGAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAGAGAAAGAAGAGAGAAAGAAGAGAGAGAGGAAGAAGAGAGAGAAAGAAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAAAGAGAAAGAAGAGAGAAAGAGAGATAGAGAGAGAGAGAAAAAAGAGAGCGATGATTTTTTTCTTATATTCGTTTAATTACTGTTTCACCTTTCTCTATTATCGACCCGTCGCTACTAATTAGTGACGCAAAGAATTACCATTTCAACTGCAACCTTGAAAGGTGGAAGCAACAAAGGAAAAGGGGGGTGTCCTCTATTAAGTGTTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2076#0 CCGGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAG 60 consensus_2076#1 CCGCGGACGCGTGGGCGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGA 60 *** * * * * ** * * ****************** * * ***** **** consensus_2076#0 AAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGA 120 consensus_2076#1 GAGAAAGA-AGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGA 119 *** *** * *** * *** **** ***** * * ****************** consensus_2076#0 GAAAGAAGAGAGAGAAAAAGAGAAATAGAGAGAGAGAA-AGAGATAGAAGAGAGAGAGAA 179 consensus_2076#1 AAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAAAGAAGAGAGAGAGAG 179 * * ***** **** * ** ******* **** ***** ************** consensus_2076#0 AGAGAGAA-AGAGAAAGAAGAGAGAGAGAAAGAGAGAGAGAGAAAGAAAGAGAGAAAGAA 238 consensus_2076#1 AGAAAGAAGAGAGAAAGAAGAGAGAAAGAA---GAGAGAGAGAAAGAA-GAGAGAAAGAA 235 *** **** **************** **** *************** *********** consensus_2076#0 GAGAGAGAAAGAGAGAGAAAGAGAGAGAAAGAGAGAGAAAGAAGAGAGAGAAAGAGAGAG 298 consensus_2076#1 GAGAGAGAGGAAGA-AGAGAGAGAAAGA---AGAGAGAAAGAAGAGAGAGAAAGA----- 286 ******** *** *** ***** *** ************************ consensus_2076#0 AAAGAAAGAGAGAAAGAAGAAAGAGAAAGGAGAGAGAAAAAAAGAGAGGAAAAAAGAGAG 358 consensus_2076#1 ----AGAGAGAGAAAGAAGAGAGAGAAAGAAGAGAGAAAGAGAAAGAAGAGAGAAAGAGA 342 * ************** ******** ********* * * *** ** * ** consensus_2076#0 AGAAAAGAGAAGGGAGAGAGAGAGAAAGATGATTTTTGTTCTTATATTCATTTAATTACT 418 consensus_2076#1 GATAGAGAGAGAGAGAAAAAAGAGAGCGATGATTTTT-TTCTTATATTCGTTTAATTACT 401 * ***** * * * ***** ********** *********** ********** consensus_2076#0 GTTTCACCTTTCTTTATTATCGACCCGTCGCTACTAGTTAGTGACGCAAAGAATTACCAT 478 consensus_2076#1 GTTTCACCTTTCTCTATTATCGACCCGTCGCTACTAATTAGTGACGCAAAGAATTACCAT 461 ************* ********************** *********************** consensus_2076#0 TTCAACTGCAACCTTGAAAGGCGGAAGCAACAAAAGAAA-GGGGGATGTCCTCTATTAAG 537 consensus_2076#1 TTCAACTGCAACCTTGAAAGGTGGAAGCAACAAAGGAAAAGGGGGGTGTCCTCTATTAAG 521 ********************* ************ **** ***** ************** consensus_2076#0 TGTTAAACACGCCCCAACGCCCCCCGTCGTTACCTACTTTTTTGTATTTTTTTTTGCGCT 597 consensus_2076#1 TGTTAA------------------------------------------------------ 527 ****** consensus_2076#0 TTACTTTCAATCGATACAGTTCTTCCTGCCACGCGCGCTCCCTCCCTCCCTACACATTGC 657 consensus_2076#1 ------------------------------------------------------------ consensus_2076#0 TGACAACTAATTCGAAGCTCT 678 consensus_2076#1 --------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||