These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_21#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 669 fasta sequence [GGATTGGTCAAACAGGGAACGTCGGGTGACAAACGTCCAATGTTGCCACTATATGGTAAGCGCAATAAGCTTCGAAACACTTTTGGCATCCGCGAATCTAGCATAAAAGCGGAGAAAGATGATGATGCGGATGCAGGGGAATGTTCCACTTCCATAACAAAGGAAACAAAATCGATTCAAAAGACAGCTCCGAATAGTGAAGACATTCCCTCCGGAAGCAAGTCCGTTTCGCGGGGAGAAGTGCCAGGTGGACCGAGCAACTATAGAAATGAACGGAAACGGTCATCTTTGGTAGCGCAAGCTGACGATCCAAGTAAAGCAGATCCTATAACCGACAGCACTTCTGCCGGCGAGAGCAGTAGTAGCAATAAGAAGAAACGACCGAGACAACGGATCCGAGATGGTAAATTTCGCGAAAACGTCGATTTTGACGATGCTGTCGAACTAGCGAGCGATGATAAAAATGTCGAGTGGGTGCCACCGTCGGGCCAGACTGGTGATGGCCGAACTTCGCTGAATGAAAAGTTTGGATACTAGTATGAATGTTTCCATACTAAAGGATAATTCGTTTAAATGCTTATGCGTATTAGTTGCTTATGTGCTCAAGTGACAGTCAATAAAAAAGTACCATGAATTTCAGCAGTGTAGAGAATAATAGTAATAATATAA] [+] EMBL BX627170 [GGATTGGTCAAACAGGGAACGTCGGGTGACAAACGTCCAATGTTGCCACTATATGGTAAGCGCAATAAGCTTCGAAACACTTTTGGCATCCGCGAATCTAGCATAAAAGCGGAGAAAGATGATGATGCGGATGCAGGGGAATGTTCCACTTCCATAACAAAGGAAACAAAATCGATTCAAAAGACAGCTCCGAATAGTGAAGACATTCCCTCCGGAAGCAAGTCCGTTTCGCGGGGAGAAGTGCCAGGTGGACCGAGCAACTATAGAAATGAACGGAAACGGTCATCTTTGGTAGCGCAAGCTGACGATCCAAGTAAAGCAGATCCTATAACCGACAGCACTTCTGCCGGCGAGAGCAGTAGTAGCAATAAGAAGAAACGACCGAGACAACGGATCCGAGATGGTAAATTTCGCGAAAACGTCGATTTTGACGATGCTGTCGAACTAGCGAGCGATGATAAAAATGTCGAGTGGGTGCCACCGTCGGGCCAGACTGGTGATGGCCGAACTTCGCTGAATGAAAAGTTTGGATACTAGTATGAATGTTTCCATACTAAAGGATAATTCGTTTAAATGCTTATGCGTATTAGTTGCTTATGTGCTCAAGTGACAGTCAATAAAAAAGTACCATGAATTTCAGCAGTGTAGAGAATAATAGTAATAATATAA] consensusID : consensus_21#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 592 fasta sequence [TAGATCGGCAGGGATTGCTGCGTCAAGCTAACCATGAGCCGCGACGACGATTCCAAAAACAATCGGATTCGGACGATGACGACGATTTTCTTGACCGGACGGGCGCAGTCGAAAAACGACGGCAGCGTAAAGAAGCTGCCAAAAATCCACAAACGCACACATACGCTGATTTGATTCACAAAGAGGCACAAATCCTCGAACGTTTGGAGACGAATTGAATCGAAGATACAAAACGCGCGGCTCATCAAACAGGAAACGCATCTGCCAGAGAATGCCGATGATGTGGCCAAATTTTTGGATAACCTGACTAAAGACAACTATAAAAATGAACGGAAACGGTCATCTTTGGTAGCGCAAGCTGACGAACCAAGTAAAGCAGATACTATAACCGACAGCACTTCTGCCGGCGAGAGCAGTAGTAGCAATAAGAAGAAACGACCGAGACAACGGATCCGAGATGGTAAATTTCGCGAAAACGTCGATTTTGACGATGCTGTCGAACTAGCGAGCGATGATAAAAATGTCGAGTGGGTGCCACCGTCGGGCCAGACTGGTGATGGCCGAACTTCACTGAATGAAAAGTTTGGATACT] [-] EMBL CNS09H7K [TAGATCGGCAGGGATTGCTGCGTCAAGCTAACCATGAGCCGCGACGACGATTCCAAAAACAATCGGATTCGGACGATGACGACGATTTTCTTGACCGGACGGGCGCAGTCGAAAAACGACGGCAGCGTAAAGAAGCTGCCAAAAATCCACAAACGCACACATACGCTGATTTGATTCACAAAGAGGCACAAATCCTCGAACGTTTGGAGACGAATTGAATCGAAGATACAAAACGCGCGGCTCATCAAACAGGAAACGCATCTGCCAGAGAATGCCGATGATGTGGCCAAATTTTTGGATAACCTGACTAAAGACAACTATAAAAATGAACGGAAACGGTCATCTTTGGTAGCGCAAGCTGACGAACCAAGTAAAGCAGATACTATAACCGACAGCACTTCTGCCGGCGAGAGCAGTAGTAGCAATAAGAAGAAACGACCGAGACAACGGATCCGAGATGGTAAATTTCGCGAAAACGTCGATTTTGACGATGCTGTCGAACTAGCGAGCGATGATAAAAATGTCGAGTGGGTGCCACCGTCGGGCCAGACTGGTGATGGCCGAACTTCACTGAATGAAAAGTTTGGATACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_21#0 -----------------------------------------------GGATTGGTCAAAC 13 consensus_21#1 TAGATCGGCAGGGATTGCTGCGTCAAGCTAACCATGAGCCGCGACGACGATTCCAAAAAC 60 **** **** consensus_21#0 AGGGAACGTCGGGTGACAAACGTCCAATGTTGCCACTATATGGTAAGCG-CAATAAGCTT 72 consensus_21#1 AATCGGATTCGGACGATGA-CGACGATTTTCTTGACCGGACGGGCGCAGTCGAAAAACGA 119 * **** ** * ** * * * * ** * ** * * * ** * consensus_21#0 CGAAACACTTTTGGCATCCGCGAATCTAGCATAAAAGCGGAGAAAGATGATGATGCGGAT 132 consensus_21#1 CGGCA-GCGTAAAGAAGCTGCCAA--AAATCCACAAACGCACACATACGCTGAT-TTGAT 175 ** * * * * * * ** ** * * ** ** * * * * * **** *** consensus_21#0 GCAGGGGAATGTTCCACTTCCATAACAAA-GGAAACAAAATCGATTCAAAAGACA----- 186 consensus_21#1 TCACAAAGAGGCACAAATCCTCGAACGTTTGGAGACGAATTGAATCGAAGATACAAAACG 235 ** * * * * * * *** *** ** ** * ** ** * *** consensus_21#0 ----GCTCCGAATAGTGAAGACATTCCCTCCGGAAGCAAGTCCGTTTCGCGGGGAGAAGT 242 consensus_21#1 CGCGGCTCATCAAACAGGAAACGCATCTGCCAGAGA-ATGCCGATGATGTGGCCAAATTT 294 **** * * * * ** * ** ** * * * * * ** * * * consensus_21#0 ---GCCAGGTGGACCGAG--CAACTATAGAAATGAACGGAAACGGTCATCTTTGGTAGCG 297 consensus_21#1 TTGGATAACCTGACTAAAGACAACTATAAAAATGAACGGAAACGGTCATCTTTGGTAGCG 354 * * *** * ******** ******************************* consensus_21#0 CAAGCTGACGATCCAAGTAAAGCAGATCCTATAACCGACAGCACTTCTGCCGGCGAGAGC 357 consensus_21#1 CAAGCTGACGAACCAAGTAAAGCAGATACTATAACCGACAGCACTTCTGCCGGCGAGAGC 414 *********** *************** ******************************** consensus_21#0 AGTAGTAGCAATAAGAAGAAACGACCGAGACAACGGATCCGAGATGGTAAATTTCGCGAA 417 consensus_21#1 AGTAGTAGCAATAAGAAGAAACGACCGAGACAACGGATCCGAGATGGTAAATTTCGCGAA 474 ************************************************************ consensus_21#0 AACGTCGATTTTGACGATGCTGTCGAACTAGCGAGCGATGATAAAAATGTCGAGTGGGTG 477 consensus_21#1 AACGTCGATTTTGACGATGCTGTCGAACTAGCGAGCGATGATAAAAATGTCGAGTGGGTG 534 ************************************************************ consensus_21#0 CCACCGTCGGGCCAGACTGGTGATGGCCGAACTTCGCTGAATGAAAAGTTTGGATACTAG 537 consensus_21#1 CCACCGTCGGGCCAGACTGGTGATGGCCGAACTTCACTGAATGAAAAGTTTGGATACT-- 592 *********************************** ********************** consensus_21#0 TATGAATGTTTCCATACTAAAGGATAATTCGTTTAAATGCTTATGCGTATTAGTTGCTTA 597 consensus_21#1 ------------------------------------------------------------ consensus_21#0 TGTGCTCAAGTGACAGTCAATAAAAAAGTACCATGAATTTCAGCAGTGTAGAGAATAATA 657 consensus_21#1 ------------------------------------------------------------ consensus_21#0 GTAATAATATAA 669 consensus_21#1 ------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||