These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2115#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence [CCGAGCAGACTTCAATGGCGGCTGCGGTGCCGCGCGATTTCCAGGCCGGCCCCGAATCGCTCCCGATGAAGGCGGGCGGGCTCGTGTCCGCCGCCAACCTGCCGCCGCCGCCGCCCTCCGCCTACCGCAGCGGGGGCAAGCGGGACGCGATGCTGTCCGGTGCCGGCGGCTGTGCAGTGTACAGTAGTAATAGTAACAGTAATAGTAACAACACTAGCGGTAGTAATCGAGGCCACAGCAACACCGGCGGCAGCAGCGTTGTTGCGGCCAACAGCACCACCACCAGCACCATCACCACCACCACCGGCATTCCCAGCACGGACCTCAGCCTGTGGGAGGCGGCGGCGAACGGCGGTGGTGGGGCCGGCACTACCAACTCCACCCTGCCGGACAAGAGCTCGATGACGGCGGCCATTCCGCGAGATTATCACGCGGCCGGTCCGGAGCATCTCGCGGCTTGCAACAAGCTAGCGGCTGCACGGCAACAGCAGCAGCAACAGTACCAGCAACAGCAACAACAGCAACAACAGCAACATCATCATCAGCAGCAGCAGCAACATCACTCCCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAACAGCATCGTCAACAGCAACATCGCCCGCACCAGCAGCACCAGCAGCAACAACAGCAGCATCATCATCAG] [+] EMBL BM586851 [CCGAGCAGACTTCAATGGCGGCTGCGGTGCCGCGCGATTTCCAGGCCGGCCCCGAATCGCTCCCGATGAAGGCGGGCGGGCTCGTGTCCGCCGCCAACCTGCCGCCGCCGCCGCCCTCCGCCTACCGCAGCGGGGGCAAGCGGGACGCGATGCTGTCCGGTGCCGGCGGCTGTGCAGTGTACAGTAGTAATAGTAACAGTAATAGTAACAACACTAGCGGTAGTAATCGAGGCCACAGCAACACCGGCGGCAGCAGCGTTGTTGCGGCCAACAGCACCACCACCAGCACCATCACCACCACCACCGGCATTCCCAGCACGGACCTCAGCCTGTGGGAGGCGGCGGCGAACGGCGGTGGTGGGGCCGGCACTACCAACTCCACCCTGCCGGACAAGAGCTCGATGACGGCGGCCATTCCGCGAGATTATCACGCGGCCGGTCCGGAGCATCTCGCGGCTTGCAACAAGCTAGCGGCTGCACGGCAACAGCAGCAGCAACAGTACCAGCAACAGCAACAACAGCAACAACAGCAACATCATCATCAGCAGCAGCAGCAACATCACTCCCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAACAGCATCGTCAACAGCAACATCGCCCGCACCAGCAGCACCAGCAGCAACAACAGCAGCATCATCATCAG] consensusID : consensus_2115#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 646 fasta sequence [GAATTGCCCACGGATTTTAGCAACAGCAGCAGCAGCTGCTGCTATTCCTGGTCAGCTGCGCCGTGTACAACAGCAGCACCTGCGAACGGTGTCAGCAGTGGCCTGGTCGAGGGCTGGCTGGTGCTGGTGTGTGGGCCCCGCTGGGTGCTGACATCTGAGAAGACTTCAATGTGCTGTGCTGTGCTGTGTGCCTGCTGCTGATTTCCATGGCCTGGCCCGAATCTGCTCCCTGATGAAGGCTGGGCTGTGGCTCGTGTCCTGCGCAACCTGCCGCCGCCGCCGCCCTCCGACCTACCGCAGCTGTGTGTGTGCAAGCGGGACGCGATGCTTGTCCGGTGCCGGCGGCTGTGCAGTGTACAGTAGGTAATAGGTAACAGTCAATAGTAACAACCACTAGCCGGTAGTAATCGAGGCCACAGCAACACCGGCTGNGCAGCAGCGTTGTATGCGGCAACTGGACCACAACAGACACCATCACCACACCACCTGGCATTCCCAGCACGGACCTCAGCCTGTGGGAGGCTGGCAGTGCCGAACGGCGGTGGTGAGGCCGGAAACTACCAAACTCCACCTGCCGGACAAGAGCTCGCATGACGGCTGGCCATTCCGCGCAGCANTTATCACGCCGGCCGGCTCCCGGAGGCAT] [+] EMBL AL695876 [GAATTGCCCACGGATTTTAGCAACAGCAGCAGCAGCTGCTGCTATTCCTGGTCAGCTGCGCCGTGTACAACAGCAGCACCTGCGAACGGTGTCAGCAGTGGCCTGGTCGAGGGCTGGCTGGTGCTGGTGTGTGGGCCCCGCTGGGTGCTGACATCTGAGAAGACTTCAATGTGCTGTGCTGTGCTGTGTGCCTGCTGCTGATTTCCATGGCCTGGCCCGAATCTGCTCCCTGATGAAGGCTGGGCTGTGGCTCGTGTCCTGCGCAACCTGCCGCCGCCGCCGCCCTCCGACCTACCGCAGCTGTGTGTGTGCAAGCGGGACGCGATGCTTGTCCGGTGCCGGCGGCTGTGCAGTGTACAGTAGGTAATAGGTAACAGTCAATAGTAACAACCACTAGCCGGTAGTAATCGAGGCCACAGCAACACCGGCTGNGCAGCAGCGTTGTATGCGGCAACTGGACCACAACAGACACCATCACCACACCACCTGGCATTCCCAGCACGGACCTCAGCCTGTGGGAGGCTGGCAGTGCCGAACGGCGGTGGTGAGGCCGGAAACTACCAAACTCCACCTGCCGGACAAGAGCTCGCATGACGGCTGGCCATTCCGCGCAGCANTTATCACGCCGGCCGGCTCCCGGAGGCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2115#0 ------------------------------------------------------------ consensus_2115#1 GAATTGCCCACGGATTTTAGCAACAGCAGCAGCAGCTGCTGCTATTCCTGGTCAGCTGCG 60 consensus_2115#0 ------------------------------------------------------------ consensus_2115#1 CCGTGTACAACAGCAGCACCTGCGAACGGTGTCAGCAGTGGCCTGGTCGAGGGCTGGCTG 120 consensus_2115#0 ----------------------------------CCGAGCAGACTTCAATGGCGGCTGCG 26 consensus_2115#1 GTGCTGGTGTGTGGGCCCCGCTGGGTGCTGACATCTGAGAAGACTTCAATGTGCTGTGCT 180 * *** *********** *** consensus_2115#0 GTGCCGCGCG----------ATTTCCA-GGCCGGCCCCGAATC-GCTCCC-GATGAAGGC 73 consensus_2115#1 GTGCTGTGTGCCTGCTGCTGATTTCCATGGCCTGGCCCGAATCTGCTCCCTGATGAAGGC 240 **** * * * ******* **** * ******** ****** ********* consensus_2115#0 -GGGCGG--GCTCGTGTCCGCCGCCAACCTGCCGCCGCCGCCGCCCTCCG-CCTACCGCA 129 consensus_2115#1 TGGGCTGTGGCTCGTGTCCTGCGC-AACCTGCCGCCGCCGCCGCCCTCCGACCTACCGCA 299 **** * ********** *** ************************* ********* consensus_2115#0 GCGGGG-----GCAAGCGGGACGCGATGCT-GTCCGGTGCCGGCGGCTGTGCAGTGTACA 183 consensus_2115#1 GCTGTGTGTGTGCAAGCGGGACGCGATGCTTGTCCGGTGCCGGCGGCTGTGCAGTGTACA 359 ** * * ******************* ***************************** consensus_2115#0 GTAG-TAATAG-TAACAGT-AATAGTAACAAC-ACTAGC-GGTAGTAATCGAGGCCACAG 238 consensus_2115#1 GTAGGTAATAGGTAACAGTCAATAGTAACAACCACTAGCCGGTAGTAATCGAGGCCACAG 419 **** ****** ******* ************ ****** ******************** consensus_2115#0 CAACACCGGC--GGCAGCAGCGTTGT-TGCGGCCAACAGCACCACCACCAGCACCATCAC 295 consensus_2115#1 CAACACCGGCTGNGCAGCAGCGTTGTATGCGGC-AACTGGACCACAACAGACACCATCAC 478 ********** ************* ****** *** * ***** ** ********* consensus_2115#0 CACCACCACCGGCATTCCCAGCACGGACCTCAGCCTGTGGGAGGC----GGCGGCGAACG 351 consensus_2115#1 CACACCACCTGGCATTCCCAGCACGGACCTCAGCCTGTGGGAGGCTGGCAGTGCCGAACG 538 *** * * *********************************** * * ****** consensus_2115#0 GCGGTGGTGGGGCCGGCA-CTACCAACTCCACCCTGCCGGACAAGAGCTCG-ATGACGGC 409 consensus_2115#1 GCGGTGGTGAGGCCGGAAACTACCAAACTCCACCTGCCGGACAAGAGCTCGCATGACGGC 598 ********* ****** * ******* * ******************* ******** consensus_2115#0 -GGCCATTCCGCGAGATTATCACGCGGCCGGTCCGGAGCATCTCGCGGCTTGCAACAAGC 468 consensus_2115#1 TGGCCATTCCGCGCAGCANTTATCACGCCGGCC---GGCTCCCGGAGGCAT--------- 646 ************ * * ***** * ** * * *** * consensus_2115#0 TAGCGGCTGCACGGCAACAGCAGCAGCAACAGTACCAGCAACAGCAACAACAGCAACAAC 528 consensus_2115#1 ------------------------------------------------------------ consensus_2115#0 AGCAACATCATCATCAGCAGCAGCAGCAACATCACTCCCAGCAGCAGCAGCAGCAGCAAC 588 consensus_2115#1 ------------------------------------------------------------ consensus_2115#0 AGCAGCAGCAACAACAGCATCGTCAACAGCAACATCGCCCGCACCAGCAGCACCAGCAGC 648 consensus_2115#1 ------------------------------------------------------------ consensus_2115#0 AACAACAGCAGCATCATCATCAG 671 consensus_2115#1 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||