cluster # 2115

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Anopheles gambiae
cluster # 2115 cluster # 2115 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2115#0 length = 671 sequences # 1

consensus_2115#1 length = 646 sequences # 1

consensusID : consensus_2115#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 671
fasta sequence

                              [CCGAGCAGACTTCAATGGCGGCTGCGGTGCCGCGCGATTTCCAGGCCGGCCCCGAATCGCTCCCGATGAAGGCGGGCGGGCTCGTGTCCGCCGCCAACCTGCCGCCGCCGCCGCCCTCCGCCTACCGCAGCGGGGGCAAGCGGGACGCGATGCTGTCCGGTGCCGGCGGCTGTGCAGTGTACAGTAGTAATAGTAACAGTAATAGTAACAACACTAGCGGTAGTAATCGAGGCCACAGCAACACCGGCGGCAGCAGCGTTGTTGCGGCCAACAGCACCACCACCAGCACCATCACCACCACCACCGGCATTCCCAGCACGGACCTCAGCCTGTGGGAGGCGGCGGCGAACGGCGGTGGTGGGGCCGGCACTACCAACTCCACCCTGCCGGACAAGAGCTCGATGACGGCGGCCATTCCGCGAGATTATCACGCGGCCGGTCCGGAGCATCTCGCGGCTTGCAACAAGCTAGCGGCTGCACGGCAACAGCAGCAGCAACAGTACCAGCAACAGCAACAACAGCAACAACAGCAACATCATCATCAGCAGCAGCAGCAACATCACTCCCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAACAGCATCGTCAACAGCAACATCGCCCGCACCAGCAGCACCAGCAGCAACAACAGCAGCATCATCATCAG]

[+] EMBL BM586851             [CCGAGCAGACTTCAATGGCGGCTGCGGTGCCGCGCGATTTCCAGGCCGGCCCCGAATCGCTCCCGATGAAGGCGGGCGGGCTCGTGTCCGCCGCCAACCTGCCGCCGCCGCCGCCCTCCGCCTACCGCAGCGGGGGCAAGCGGGACGCGATGCTGTCCGGTGCCGGCGGCTGTGCAGTGTACAGTAGTAATAGTAACAGTAATAGTAACAACACTAGCGGTAGTAATCGAGGCCACAGCAACACCGGCGGCAGCAGCGTTGTTGCGGCCAACAGCACCACCACCAGCACCATCACCACCACCACCGGCATTCCCAGCACGGACCTCAGCCTGTGGGAGGCGGCGGCGAACGGCGGTGGTGGGGCCGGCACTACCAACTCCACCCTGCCGGACAAGAGCTCGATGACGGCGGCCATTCCGCGAGATTATCACGCGGCCGGTCCGGAGCATCTCGCGGCTTGCAACAAGCTAGCGGCTGCACGGCAACAGCAGCAGCAACAGTACCAGCAACAGCAACAACAGCAACAACAGCAACATCATCATCAGCAGCAGCAGCAACATCACTCCCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAACAGCATCGTCAACAGCAACATCGCCCGCACCAGCAGCACCAGCAGCAACAACAGCAGCATCATCATCAG]




>consensus_2115#0
CCGAGCAGACTTCAATGGCGGCTGCGGTGCCGCGCGATTTCCAGGCCGGCCCCGAATCGC
TCCCGATGAAGGCGGGCGGGCTCGTGTCCGCCGCCAACCTGCCGCCGCCGCCGCCCTCCG
CCTACCGCAGCGGGGGCAAGCGGGACGCGATGCTGTCCGGTGCCGGCGGCTGTGCAGTGT
ACAGTAGTAATAGTAACAGTAATAGTAACAACACTAGCGGTAGTAATCGAGGCCACAGCA
ACACCGGCGGCAGCAGCGTTGTTGCGGCCAACAGCACCACCACCAGCACCATCACCACCA
CCACCGGCATTCCCAGCACGGACCTCAGCCTGTGGGAGGCGGCGGCGAACGGCGGTGGTG
GGGCCGGCACTACCAACTCCACCCTGCCGGACAAGAGCTCGATGACGGCGGCCATTCCGC
GAGATTATCACGCGGCCGGTCCGGAGCATCTCGCGGCTTGCAACAAGCTAGCGGCTGCAC
GGCAACAGCAGCAGCAACAGTACCAGCAACAGCAACAACAGCAACAACAGCAACATCATC
ATCAGCAGCAGCAGCAACATCACTCCCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAAC
AACAGCATCGTCAACAGCAACATCGCCCGCACCAGCAGCACCAGCAGCAACAACAGCAGC
ATCATCATCAG

consensusID : consensus_2115#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 646
fasta sequence

                              [GAATTGCCCACGGATTTTAGCAACAGCAGCAGCAGCTGCTGCTATTCCTGGTCAGCTGCGCCGTGTACAACAGCAGCACCTGCGAACGGTGTCAGCAGTGGCCTGGTCGAGGGCTGGCTGGTGCTGGTGTGTGGGCCCCGCTGGGTGCTGACATCTGAGAAGACTTCAATGTGCTGTGCTGTGCTGTGTGCCTGCTGCTGATTTCCATGGCCTGGCCCGAATCTGCTCCCTGATGAAGGCTGGGCTGTGGCTCGTGTCCTGCGCAACCTGCCGCCGCCGCCGCCCTCCGACCTACCGCAGCTGTGTGTGTGCAAGCGGGACGCGATGCTTGTCCGGTGCCGGCGGCTGTGCAGTGTACAGTAGGTAATAGGTAACAGTCAATAGTAACAACCACTAGCCGGTAGTAATCGAGGCCACAGCAACACCGGCTGNGCAGCAGCGTTGTATGCGGCAACTGGACCACAACAGACACCATCACCACACCACCTGGCATTCCCAGCACGGACCTCAGCCTGTGGGAGGCTGGCAGTGCCGAACGGCGGTGGTGAGGCCGGAAACTACCAAACTCCACCTGCCGGACAAGAGCTCGCATGACGGCTGGCCATTCCGCGCAGCANTTATCACGCCGGCCGGCTCCCGGAGGCAT]

[+] EMBL AL695876             [GAATTGCCCACGGATTTTAGCAACAGCAGCAGCAGCTGCTGCTATTCCTGGTCAGCTGCGCCGTGTACAACAGCAGCACCTGCGAACGGTGTCAGCAGTGGCCTGGTCGAGGGCTGGCTGGTGCTGGTGTGTGGGCCCCGCTGGGTGCTGACATCTGAGAAGACTTCAATGTGCTGTGCTGTGCTGTGTGCCTGCTGCTGATTTCCATGGCCTGGCCCGAATCTGCTCCCTGATGAAGGCTGGGCTGTGGCTCGTGTCCTGCGCAACCTGCCGCCGCCGCCGCCCTCCGACCTACCGCAGCTGTGTGTGTGCAAGCGGGACGCGATGCTTGTCCGGTGCCGGCGGCTGTGCAGTGTACAGTAGGTAATAGGTAACAGTCAATAGTAACAACCACTAGCCGGTAGTAATCGAGGCCACAGCAACACCGGCTGNGCAGCAGCGTTGTATGCGGCAACTGGACCACAACAGACACCATCACCACACCACCTGGCATTCCCAGCACGGACCTCAGCCTGTGGGAGGCTGGCAGTGCCGAACGGCGGTGGTGAGGCCGGAAACTACCAAACTCCACCTGCCGGACAAGAGCTCGCATGACGGCTGGCCATTCCGCGCAGCANTTATCACGCCGGCCGGCTCCCGGAGGCAT]




>consensus_2115#1
GAATTGCCCACGGATTTTAGCAACAGCAGCAGCAGCTGCTGCTATTCCTGGTCAGCTGCG
CCGTGTACAACAGCAGCACCTGCGAACGGTGTCAGCAGTGGCCTGGTCGAGGGCTGGCTG
GTGCTGGTGTGTGGGCCCCGCTGGGTGCTGACATCTGAGAAGACTTCAATGTGCTGTGCT
GTGCTGTGTGCCTGCTGCTGATTTCCATGGCCTGGCCCGAATCTGCTCCCTGATGAAGGC
TGGGCTGTGGCTCGTGTCCTGCGCAACCTGCCGCCGCCGCCGCCCTCCGACCTACCGCAG
CTGTGTGTGTGCAAGCGGGACGCGATGCTTGTCCGGTGCCGGCGGCTGTGCAGTGTACAG
TAGGTAATAGGTAACAGTCAATAGTAACAACCACTAGCCGGTAGTAATCGAGGCCACAGC
AACACCGGCTGNGCAGCAGCGTTGTATGCGGCAACTGGACCACAACAGACACCATCACCA
CACCACCTGGCATTCCCAGCACGGACCTCAGCCTGTGGGAGGCTGGCAGTGCCGAACGGC
GGTGGTGAGGCCGGAAACTACCAAACTCCACCTGCCGGACAAGAGCTCGCATGACGGCTG
GCCATTCCGCGCAGCANTTATCACGCCGGCCGGCTCCCGGAGGCAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2115#0      ------------------------------------------------------------
consensus_2115#1      GAATTGCCCACGGATTTTAGCAACAGCAGCAGCAGCTGCTGCTATTCCTGGTCAGCTGCG 60
                                                                                  

consensus_2115#0      ------------------------------------------------------------
consensus_2115#1      CCGTGTACAACAGCAGCACCTGCGAACGGTGTCAGCAGTGGCCTGGTCGAGGGCTGGCTG 120
                                                                                  

consensus_2115#0      ----------------------------------CCGAGCAGACTTCAATGGCGGCTGCG 26
consensus_2115#1      GTGCTGGTGTGTGGGCCCCGCTGGGTGCTGACATCTGAGAAGACTTCAATGTGCTGTGCT 180
                                                        * *** ***********     *** 

consensus_2115#0      GTGCCGCGCG----------ATTTCCA-GGCCGGCCCCGAATC-GCTCCC-GATGAAGGC 73
consensus_2115#1      GTGCTGTGTGCCTGCTGCTGATTTCCATGGCCTGGCCCGAATCTGCTCCCTGATGAAGGC 240
                      **** * * *          ******* **** * ******** ****** *********

consensus_2115#0      -GGGCGG--GCTCGTGTCCGCCGCCAACCTGCCGCCGCCGCCGCCCTCCG-CCTACCGCA 129
consensus_2115#1      TGGGCTGTGGCTCGTGTCCTGCGC-AACCTGCCGCCGCCGCCGCCCTCCGACCTACCGCA 299
                       **** *  **********  *** ************************* *********

consensus_2115#0      GCGGGG-----GCAAGCGGGACGCGATGCT-GTCCGGTGCCGGCGGCTGTGCAGTGTACA 183
consensus_2115#1      GCTGTGTGTGTGCAAGCGGGACGCGATGCTTGTCCGGTGCCGGCGGCTGTGCAGTGTACA 359
                      ** * *     ******************* *****************************

consensus_2115#0      GTAG-TAATAG-TAACAGT-AATAGTAACAAC-ACTAGC-GGTAGTAATCGAGGCCACAG 238
consensus_2115#1      GTAGGTAATAGGTAACAGTCAATAGTAACAACCACTAGCCGGTAGTAATCGAGGCCACAG 419
                      **** ****** ******* ************ ****** ********************

consensus_2115#0      CAACACCGGC--GGCAGCAGCGTTGT-TGCGGCCAACAGCACCACCACCAGCACCATCAC 295
consensus_2115#1      CAACACCGGCTGNGCAGCAGCGTTGTATGCGGC-AACTGGACCACAACAGACACCATCAC 478
                      **********   ************* ****** *** * ***** **   *********

consensus_2115#0      CACCACCACCGGCATTCCCAGCACGGACCTCAGCCTGTGGGAGGC----GGCGGCGAACG 351
consensus_2115#1      CACACCACCTGGCATTCCCAGCACGGACCTCAGCCTGTGGGAGGCTGGCAGTGCCGAACG 538
                      ***  *  * ***********************************     * * ******

consensus_2115#0      GCGGTGGTGGGGCCGGCA-CTACCAACTCCACCCTGCCGGACAAGAGCTCG-ATGACGGC 409
consensus_2115#1      GCGGTGGTGAGGCCGGAAACTACCAAACTCCACCTGCCGGACAAGAGCTCGCATGACGGC 598
                      ********* ****** * *******   *  ******************* ********

consensus_2115#0      -GGCCATTCCGCGAGATTATCACGCGGCCGGTCCGGAGCATCTCGCGGCTTGCAACAAGC 468
consensus_2115#1      TGGCCATTCCGCGCAGCANTTATCACGCCGGCC---GGCTCCCGGAGGCAT--------- 646
                       ************      * *    ***** *    **  *  * *** *         

consensus_2115#0      TAGCGGCTGCACGGCAACAGCAGCAGCAACAGTACCAGCAACAGCAACAACAGCAACAAC 528
consensus_2115#1      ------------------------------------------------------------
                                                                                  

consensus_2115#0      AGCAACATCATCATCAGCAGCAGCAGCAACATCACTCCCAGCAGCAGCAGCAGCAGCAAC 588
consensus_2115#1      ------------------------------------------------------------
                                                                                  

consensus_2115#0      AGCAGCAGCAACAACAGCATCGTCAACAGCAACATCGCCCGCACCAGCAGCACCAGCAGC 648
consensus_2115#1      ------------------------------------------------------------
                                                                                  

consensus_2115#0      AACAACAGCAGCATCATCATCAG 671
consensus_2115#1      -----------------------