These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2121#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 749 fasta sequence [GAAAACGACGCCACACGAATACTCTCCTGCGCCTGTGTTGTGAGGGGAATTGCTTCCATTCGGAAGGTGCTATGGAAAAATTCTTAATCGATTGTACGGAGGGGAAACACTGGCTAGCTTGTTGCGCTATGTTGTGCAGGGTTGTCGTTTTGTATTTAGTTGTTTTTGAAGAAGAACATAAAAAACAACAATACTCCATAGCATTGGCGAAACAGGAAGAGAGAACGCCACTGTGTGCACGCTTCAACGATCTAATGGTTTGCGTGCGTTAATTGTACTGGGCATGAGTCTCGTGGGAGGTGGATTGCAACGATCTACTTTACATTTGTGTTATTGTGTTGTTAGTTTGATATAATGTGACGATAATTATTCCACTTTATTGGTTGAAGATAATTGTCAATTACGCCGAGTATGCCGACTGATCTTTGATGCTGGTCGGAGGATTTTGATGGCTGATGCTTTTGCAAACGAAGTATAATCACTCACATTTATGCTTTCAGTGCGGTTATACACAATTTGTTACGGTAGCATTTTTTTGTTCGTTATAACATGCTAACTAATGCTTGAACAAATAAAATGAATCTATTTGTATAATTTTAACAATATTGTGCATATTATCGATTGTAACCAATATCAAGAGTTGAACCGAAGCATCAATTTGATTAACAAAAACTGAAAAAATGTGATAAATATGCAATTCCGTAACTATCATACCTAGAATAATTTTTTTCAATGGAAATAAAGNTATT] [+] EMBL BX621385 [GAAAACGACGCCACACGAATACTCTCCTGCGCCTGTGTTGTGAGGGGAATTGCTTCCATTCGGAAGGTGCTATGGAAAAATTCTTAATCGATTGTACGGAGGGGAAACACTGGCTAGCTTGTTGCGCTATGTTGTGCAGGGTTGTCGTTTTGTATTTAGTTGTTTTTGAAGAAGAACATAAAAAACAACAATACTCCATAGCATTGGCGAAACAGGAAGAGAGAACGCCACTGTGTGCACGCTTCAACGATCTAATGGTTTGCGTGCGTTAATTGTACTGGGCATGAGTCTCGTGGGAGGTGGATTGCAACGATCTACTTTACATTTGTGTTATTGTGTTGTTAGTTTGATATAATGTGACGATAATTATTCCACTTTATTGGTTGAAGATAATTGTCAATTACGCCGAGTATGCCGACTGATCTTTGATGCTGGTCGGAGGATTTTGATGGCTGATGCTTTTGCAAACGAAGTATAATCACTCACATTTATGCTTTCAGTGCGGTTATACACAATTTGTTACGGTAGCATTTTTTTGTTCGTTATAACATGCTAACTAATGCTTGAACAAATAAAATGAATCTATTTGTATAATTTTAACAATATTGTGCATATTATCGATTGTAACCAATATCAAGAGTTGAACCGAAGCATCAATTTGATTAACAAAAACTGAAAAAATGTGATAAATATGCAATTCCGTAACTATCATACCTAGAATAATTTTTTTCAATGGAAATAAAGNTATT] consensusID : consensus_2121#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 417 fasta sequence [AAATCGGTAGCATATTTTATGCTAGAGATATTTCTGTTCCACCACCATTTTCTGCACAACACATGTTTGCAGAGTAATTCATTAACCGACGGAGTATCCCCGGTGGCACATGTGTTCAGGCTTTCACGACCAAAAACGTACTGGAATGACTGGCTTTGTTGTTTATTTCGATGCCATGGTGTAGAATAGGGACAGCAAACAAGTTGCTTCTTGGCGCCCAGATGTAGCTCGCTGACCGGGGAAAAAACTGTTGCATGTGAAAACGACGCCACACGAATACTCCTCCTGCGCCTGGTGTTGTGAGGGGAAATGCTTTCCATTCGGAANGGTGCTATGGAAAAATTCTTAATCGATTGTACGGAGGGGAAACACCTGGCTAGCTTGTTGCCGCTNATGTTGTTGCAGGGGTTTGTTCGT] [+] EMBL BX619637 [AAATCGGTAGCATATTTTATGCTAGAGATATTTCTGTTCCACCACCATTTTCTGCACAACACATGTTTGCAGAGTAATTCATTAACCGACGGAGTATCCCCGGTGGCACATGTGTTCAGGCTTTCACGACCAAAAACGTACTGGAATGACTGGCTTTGTTGTTTATTTCGATGCCATGGTGTAGAATAGGGACAGCAAACAAGTTGCTTCTTGGCGCCCAGATGTAGCTCGCTGACCGGGGAAAAAACTGTTGCATGTGAAAACGACGCCACACGAATACTCCTCCTGCGCCTGGTGTTGTGAGGGGAAATGCTTTCCATTCGGAANGGTGCTATGGAAAAATTCTTAATCGATTGTACGGAGGGGAAACACCTGGCTAGCTTGTTGCCGCTNATGTTGTTGCAGGGGTTTGTTCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2121#0 GAAAACGACGCCACACGAATACTCTCCTGCGCCTGTGTTGTGAGGGGAATTGCTTCCATT 60 consensus_2121#1 ------------------------------------------------------------ consensus_2121#0 CGGAAGGTGCTATGGAAAAATTCTTAATCGATTGTACGGAGGGGAAACACTGGCTAGCTT 120 consensus_2121#1 ------------------------------------------------------------ consensus_2121#0 GTTGCGCTATGTTGTGCAGGGTTGTCGTTTTGTATTTAGTTGTTTTTGAAGAAGAACATA 180 consensus_2121#1 ------------------------------------------------------------ consensus_2121#0 AAAAACAACAATACTCCATAGCATTGGCGAAACAGGAAGAGAGAACGCCACTGTGTGCAC 240 consensus_2121#1 -AAATCGGTAGCATATTTTA-TGCTAGAGATATTTCT-GTTCCACCACCATTTTCTGCAC 57 *** * * * ** * * ** * * * * *** * * ***** consensus_2121#0 GCTTCAACGATCTAATGGTTTGCGTGCGTTAATTGTACTGGGCATGAGTCTCGTGGGAGG 300 consensus_2121#1 AACACA-TGTTTGCAGAGT---AATTCATTAACCG-ACGGAGTATC--CCCGGTGGCACA 110 ** * * * ** * * **** * ** * * ** * **** * consensus_2121#0 TGGATTGCAACGATCTACTTTACATTTGTGTTATTGTGTTGTTAGTTTGATATAATGTGA 360 consensus_2121#1 TGTGTTCAGGCTTTCACGACCAAAAACGTACTGGAATG--ACTGGCTTTGT------TGT 162 ** ** * ** * * ** * ** * * ** * ** consensus_2121#0 CGATAATTATTCCACTTTATTGGTTGAAGATAATTGTCAA-TTACGCCGAGTATGCCGAC 419 consensus_2121#1 TTATTTCGATGCCATGGTGTAGAATAGGGACAGCAAACAAGTTGCTTCTTG-GCGCCCA- 220 ** ** *** * * * * ** * *** ** * * * *** * consensus_2121#0 TGATCTTTGATGCTGGTCGGAGGATTTTGATGGCTGATGCTTTTGCAAACGAAGTATAAT 479 consensus_2121#1 -GATGTAGCTCGCTGACCGGGGAA-----AAAACTGTTGCATGTGAAAACGACGCCACAC 274 *** * **** *** * * * *** *** * ** ****** * * consensus_2121#0 CACTCACATTTATGCTTTCAGTGCGGTTATACACAATTTGTTACGGTAGCATTTTTTTGT 539 consensus_2121#1 GAATACTCCTCCTGCGCCTGGTGTTGTGAGGGGAAATGCTTTCCATTCGGAANGGT---- 330 * * * *** *** ** * *** ** * * * * * consensus_2121#0 TCGTTATAACATGCTAACTAAT-GCTTGAACAAATAAAATGAATCTATTTGTATAATTTT 598 consensus_2121#1 --GCTATGGAAAAATTCTTAATCGATTGTACGGAGGGGAAACACCTGGCTAGCTTGTTGC 388 * *** * * **** * *** ** * * * ** * * ** consensus_2121#0 AAC-AATATTGT-GCATATTATCGATTGTAACCAATATCAAGAGTTGAACCGAAGCATCA 656 consensus_2121#1 CGCTNATGTTGTTGCAGGGGTTTGTTCGT------------------------------- 417 * ** **** *** * * * ** consensus_2121#0 ATTTGATTAACAAAAACTGAAAAAATGTGATAAATATGCAATTCCGTAACTATCATACCT 716 consensus_2121#1 ------------------------------------------------------------ consensus_2121#0 AGAATAATTTTTTTCAATGGAAATAAAGNTATT 749 consensus_2121#1 --------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||