cluster # 2126

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Anopheles gambiae
cluster # 2126 cluster # 2126 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2126#0 length = 663 sequences # 1

consensus_2126#1 length = 102 sequences # 1

consensusID : consensus_2126#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 663
fasta sequence

                              [CGACCCACGCGTCCGCGGCAGGTTGGTAGCGGTATCGAACGAATGGAAATAGCCGAGTTCTACTGCCGGAACGTTGCCGTACTGCTTCCGGTGCTTCTAGTGCTGCTGCTGGTGGTGCTGCCGAGCGCCAACAATCGCAAGGCCCGTTCGGTGGGATCGGTAGCCGCCGCCGCTCAACCCACCGACTCGTCCGACTGCGATCTGCTCGGGTGCGGCGGTATTTACGAGTGTTACGGCAATGGTTGGGTGAACTATCTGCCGTACCGGGCCGGCGAACGGTACAACATCCCACTGAGCGCGTTCCACGCCGGGGCCAGCACGCAGCAGGGCCAGCCGGAGTGTCTGCTCGGCACGGCCAACAACTATCTGCCGTGGGTGACGGAGGACGGCCGGCTGACGGTACGGCCCGGACCGCATGCGCTCGATCTGTCCGGTCTGCGGCTGTCCGATCACGGTGTGCAGGGGTTGGTGCAGGGTGTCAGCGCACTGATACCACTTGAAGAAGTGCTCCATCTATCGATCGCTAGGAACGAACTAACGCTTGTACCCTCGCCAACGCTGAAAAAGTTCCAAAATGTGCGCCTCCTCTCGCTGAGTGGCAATTTCTTCACTGAACTTCTCCAACGACACGGCCGAACACAACCGTTTGCCATTGCTGACCAA]

[+] EMBL BM652753             [CGACCCACGCGTCCGCGGCAGGTTGGTAGCGGTATCGAACGAATGGAAATAGCCGAGTTCTACTGCCGGAACGTTGCCGTACTGCTTCCGGTGCTTCTAGTGCTGCTGCTGGTGGTGCTGCCGAGCGCCAACAATCGCAAGGCCCGTTCGGTGGGATCGGTAGCCGCCGCCGCTCAACCCACCGACTCGTCCGACTGCGATCTGCTCGGGTGCGGCGGTATTTACGAGTGTTACGGCAATGGTTGGGTGAACTATCTGCCGTACCGGGCCGGCGAACGGTACAACATCCCACTGAGCGCGTTCCACGCCGGGGCCAGCACGCAGCAGGGCCAGCCGGAGTGTCTGCTCGGCACGGCCAACAACTATCTGCCGTGGGTGACGGAGGACGGCCGGCTGACGGTACGGCCCGGACCGCATGCGCTCGATCTGTCCGGTCTGCGGCTGTCCGATCACGGTGTGCAGGGGTTGGTGCAGGGTGTCAGCGCACTGATACCACTTGAAGAAGTGCTCCATCTATCGATCGCTAGGAACGAACTAACGCTTGTACCCTCGCCAACGCTGAAAAAGTTCCAAAATGTGCGCCTCCTCTCGCTGAGTGGCAATTTCTTCACTGAACTTCTCCAACGACACGGCCGAACACAACCGTTTGCCATTGCTGACCAA]




>consensus_2126#0
CGACCCACGCGTCCGCGGCAGGTTGGTAGCGGTATCGAACGAATGGAAATAGCCGAGTTC
TACTGCCGGAACGTTGCCGTACTGCTTCCGGTGCTTCTAGTGCTGCTGCTGGTGGTGCTG
CCGAGCGCCAACAATCGCAAGGCCCGTTCGGTGGGATCGGTAGCCGCCGCCGCTCAACCC
ACCGACTCGTCCGACTGCGATCTGCTCGGGTGCGGCGGTATTTACGAGTGTTACGGCAAT
GGTTGGGTGAACTATCTGCCGTACCGGGCCGGCGAACGGTACAACATCCCACTGAGCGCG
TTCCACGCCGGGGCCAGCACGCAGCAGGGCCAGCCGGAGTGTCTGCTCGGCACGGCCAAC
AACTATCTGCCGTGGGTGACGGAGGACGGCCGGCTGACGGTACGGCCCGGACCGCATGCG
CTCGATCTGTCCGGTCTGCGGCTGTCCGATCACGGTGTGCAGGGGTTGGTGCAGGGTGTC
AGCGCACTGATACCACTTGAAGAAGTGCTCCATCTATCGATCGCTAGGAACGAACTAACG
CTTGTACCCTCGCCAACGCTGAAAAAGTTCCAAAATGTGCGCCTCCTCTCGCTGAGTGGC
AATTTCTTCACTGAACTTCTCCAACGACACGGCCGAACACAACCGTTTGCCATTGCTGAC
CAA

consensusID : consensus_2126#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 102
fasta sequence

                              [CCGCCCACGCGTCCGGGTTCGTCCGGCAGGTTGGTAGCGGGATCAAACGAATGGAAATATCCGAGTTCTACTGCCGGAACGTTGCCGTACTGCTTCCGGTGC]

[+] EMBL BM600514             [CCGCCCACGCGTCCGGGTTCGTCCGGCAGGTTGGTAGCGGGATCAAACGAATGGAAATATCCGAGTTCTACTGCCGGAACGTTGCCGTACTGCTTCCGGTGC]




>consensus_2126#1
CCGCCCACGCGTCCGGGTTCGTCCGGCAGGTTGGTAGCGGGATCAAACGAATGGAAATAT
CCGAGTTCTACTGCCGGAACGTTGCCGTACTGCTTCCGGTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2126#0      CGACCCACGCGTCCG--------CGGCAGGTTGGTAGCGGTATCGAACGAATGGAAATAG 52
consensus_2126#1      CCGCCCACGCGTCCGGGTTCGTCCGGCAGGTTGGTAGCGGGATCAAACGAATGGAAATAT 60
                      *  ************        ***************** *** ************** 

consensus_2126#0      CCGAGTTCTACTGCCGGAACGTTGCCGTACTGCTTCCGGTGCTTCTAGTGCTGCTGCTGG 112
consensus_2126#1      CCGAGTTCTACTGCCGGAACGTTGCCGTACTGCTTCCGGTGC------------------ 102
                      ******************************************                  

consensus_2126#0      TGGTGCTGCCGAGCGCCAACAATCGCAAGGCCCGTTCGGTGGGATCGGTAGCCGCCGCCG 172
consensus_2126#1      ------------------------------------------------------------
                                                                                  

consensus_2126#0      CTCAACCCACCGACTCGTCCGACTGCGATCTGCTCGGGTGCGGCGGTATTTACGAGTGTT 232
consensus_2126#1      ------------------------------------------------------------
                                                                                  

consensus_2126#0      ACGGCAATGGTTGGGTGAACTATCTGCCGTACCGGGCCGGCGAACGGTACAACATCCCAC 292
consensus_2126#1      ------------------------------------------------------------
                                                                                  

consensus_2126#0      TGAGCGCGTTCCACGCCGGGGCCAGCACGCAGCAGGGCCAGCCGGAGTGTCTGCTCGGCA 352
consensus_2126#1      ------------------------------------------------------------
                                                                                  

consensus_2126#0      CGGCCAACAACTATCTGCCGTGGGTGACGGAGGACGGCCGGCTGACGGTACGGCCCGGAC 412
consensus_2126#1      ------------------------------------------------------------
                                                                                  

consensus_2126#0      CGCATGCGCTCGATCTGTCCGGTCTGCGGCTGTCCGATCACGGTGTGCAGGGGTTGGTGC 472
consensus_2126#1      ------------------------------------------------------------
                                                                                  

consensus_2126#0      AGGGTGTCAGCGCACTGATACCACTTGAAGAAGTGCTCCATCTATCGATCGCTAGGAACG 532
consensus_2126#1      ------------------------------------------------------------
                                                                                  

consensus_2126#0      AACTAACGCTTGTACCCTCGCCAACGCTGAAAAAGTTCCAAAATGTGCGCCTCCTCTCGC 592
consensus_2126#1      ------------------------------------------------------------
                                                                                  

consensus_2126#0      TGAGTGGCAATTTCTTCACTGAACTTCTCCAACGACACGGCCGAACACAACCGTTTGCCA 652
consensus_2126#1      ------------------------------------------------------------
                                                                                  

consensus_2126#0      TTGCTGACCAA 663
consensus_2126#1      -----------