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Anopheles gambiae
cluster # 2132 cluster # 2132       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2132#0 length = 675 sequences # 1  
consensus_2132#1 length = 577 sequences # 1  

consensusID : consensus_2132#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 675
fasta sequence
                              [ATCCCCCGAGGTTATAATCGATTGGAAACGGTCACTAAACCCGGAACCATGCTTGATCGACNAAACGGCAAACGTGGATAGCAAGATCAACAGTTGATTGTGAGTTTTATGAAAACGAAATAAGTGGCGCAAAATACTCGAACTCGGACAAGAATTAGCTCCCGCGCAACGTTCCAACCTCCTCTGGGCCTGGCCGCTCGAGCAGGACGTGGAACGNGNCTCGNGTGAGGTGCTGGCGCGATGTGGAATACGAAATATTTGCTAGCATAGGCTTGTGGTACTTGGTTTGCTTGAGTGGATCATCGGACTGTGCAAATGAGGCTTATCAGTGTAATCGGGTATAGAACATCGACGAACGAATGGTAGAGCTCCAAGTACGCGCCCGTTCGGTACATTCCATTNAGCGTTCGTCAGCGGATCGGAAAGCTCGTTACGAGAGGTAAGCGGGCAAATGGCAGGACGAGCAGCCAGATGCGTTCGATGTCTTGCTACTTTCAACAACGGTGCTTGCGTTCGAGACCAGTATGTAANAGGAGNTTTACCTGGTCCGCNTCGCGATACTCACTTGGACCGGGCAGCGGAAAGGGCGTACACACAAACCATTGCCTTTGGNACCCGGTGCAGTCGTTTGANGCGTGCATTCGGAAACCTGCTGGAACAGNTCGCGGATNCGGN]

[+] EMBL AL934482             [ATCCCCCGAGGTTATAATCGATTGGAAACGGTCACTAAACCCGGAACCATGCTTGATCGACNAAACGGCAAACGTGGATAGCAAGATCAACAGTTGATTGTGAGTTTTATGAAAACGAAATAAGTGGCGCAAAATACTCGAACTCGGACAAGAATTAGCTCCCGCGCAACGTTCCAACCTCCTCTGGGCCTGGCCGCTCGAGCAGGACGTGGAACGNGNCTCGNGTGAGGTGCTGGCGCGATGTGGAATACGAAATATTTGCTAGCATAGGCTTGTGGTACTTGGTTTGCTTGAGTGGATCATCGGACTGTGCAAATGAGGCTTATCAGTGTAATCGGGTATAGAACATCGACGAACGAATGGTAGAGCTCCAAGTACGCGCCCGTTCGGTACATTCCATTNAGCGTTCGTCAGCGGATCGGAAAGCTCGTTACGAGAGGTAAGCGGGCAAATGGCAGGACGAGCAGCCAGATGCGTTCGATGTCTTGCTACTTTCAACAACGGTGCTTGCGTTCGAGACCAGTATGTAANAGGAGNTTTACCTGGTCCGCNTCGCGATACTCACTTGGACCGGGCAGCGGAAAGGGCGTACACACAAACCATTGCCTTTGGNACCCGGTGCAGTCGTTTGANGCGTGCATTCGGAAACCTGCTGGAACAGNTCGCGGATNCGGN]


>consensus_2132#0 ATCCCCCGAGGTTATAATCGATTGGAAACGGTCACTAAACCCGGAACCATGCTTGATCGA CNAAACGGCAAACGTGGATAGCAAGATCAACAGTTGATTGTGAGTTTTATGAAAACGAAA TAAGTGGCGCAAAATACTCGAACTCGGACAAGAATTAGCTCCCGCGCAACGTTCCAACCT CCTCTGGGCCTGGCCGCTCGAGCAGGACGTGGAACGNGNCTCGNGTGAGGTGCTGGCGCG ATGTGGAATACGAAATATTTGCTAGCATAGGCTTGTGGTACTTGGTTTGCTTGAGTGGAT CATCGGACTGTGCAAATGAGGCTTATCAGTGTAATCGGGTATAGAACATCGACGAACGAA TGGTAGAGCTCCAAGTACGCGCCCGTTCGGTACATTCCATTNAGCGTTCGTCAGCGGATC GGAAAGCTCGTTACGAGAGGTAAGCGGGCAAATGGCAGGACGAGCAGCCAGATGCGTTCG ATGTCTTGCTACTTTCAACAACGGTGCTTGCGTTCGAGACCAGTATGTAANAGGAGNTTT ACCTGGTCCGCNTCGCGATACTCACTTGGACCGGGCAGCGGAAAGGGCGTACACACAAAC CATTGCCTTTGGNACCCGGTGCAGTCGTTTGANGCGTGCATTCGGAAACCTGCTGGAACA GNTCGCGGATNCGGN



consensusID : consensus_2132#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 577
fasta sequence
                              [CCTGGCCGCTCGAGCAGGACGTGGAACGGCTCGGTGAGGTGTGGCGCGATGTGGAATACGAAAGATTGCTAGCATAGGCTGTGGTACTGGTTTGCTTGAGTGGATCATCGACTGTGCAAATGAGGCTATCAGTGTAATCGGTATAGAAATCGACGAAGAATGGTGGAGCTCCAAGTACGCACCCGTTCGGTACATTCCATTAGCGTTCGTCAGCGGATCGGAAAGCTCGTTACGAGAGGTAACGGCCAAATGGCAGGACGAGCAGCCAGATGTGTTGATGTTTTGCTACTTCAACAACGGTGCTGCGTTCGAGCAGTATGTAAAGGAGTTTACCGGTCGTTTCGTGATACTAATTGGACCGGGCCAGGGAAAGGGCGTACACACAAACCCATTGCCTTTGGCACCCGGTGAGTCGTTTGAGCGTGATTGGAAACTGCTGGAACAGTTCGCGATCGGAAGCGAAAATGTCAATTGCATTGCCATCTATGAGCGAACAAAGTTATAAACCGTGTAAAGCACAATTTACTATACAAATATAATGTGAACAAAATTATACGAGCAGCATATTGCTGACGAA]

[-] EMBL CNS09MXD             [CCTGGCCGCTCGAGCAGGACGTGGAACGGCTCGGTGAGGTGTGGCGCGATGTGGAATACGAAAGATTGCTAGCATAGGCTGTGGTACTGGTTTGCTTGAGTGGATCATCGACTGTGCAAATGAGGCTATCAGTGTAATCGGTATAGAAATCGACGAAGAATGGTGGAGCTCCAAGTACGCACCCGTTCGGTACATTCCATTAGCGTTCGTCAGCGGATCGGAAAGCTCGTTACGAGAGGTAACGGCCAAATGGCAGGACGAGCAGCCAGATGTGTTGATGTTTTGCTACTTCAACAACGGTGCTGCGTTCGAGCAGTATGTAAAGGAGTTTACCGGTCGTTTCGTGATACTAATTGGACCGGGCCAGGGAAAGGGCGTACACACAAACCCATTGCCTTTGGCACCCGGTGAGTCGTTTGAGCGTGATTGGAAACTGCTGGAACAGTTCGCGATCGGAAGCGAAAATGTCAATTGCATTGCCATCTATGAGCGAACAAAGTTATAAACCGTGTAAAGCACAATTTACTATACAAATATAATGTGAACAAAATTATACGAGCAGCATATTGCTGACGAA]


>consensus_2132#1 CCTGGCCGCTCGAGCAGGACGTGGAACGGCTCGGTGAGGTGTGGCGCGATGTGGAATACG AAAGATTGCTAGCATAGGCTGTGGTACTGGTTTGCTTGAGTGGATCATCGACTGTGCAAA TGAGGCTATCAGTGTAATCGGTATAGAAATCGACGAAGAATGGTGGAGCTCCAAGTACGC ACCCGTTCGGTACATTCCATTAGCGTTCGTCAGCGGATCGGAAAGCTCGTTACGAGAGGT AACGGCCAAATGGCAGGACGAGCAGCCAGATGTGTTGATGTTTTGCTACTTCAACAACGG TGCTGCGTTCGAGCAGTATGTAAAGGAGTTTACCGGTCGTTTCGTGATACTAATTGGACC GGGCCAGGGAAAGGGCGTACACACAAACCCATTGCCTTTGGCACCCGGTGAGTCGTTTGA GCGTGATTGGAAACTGCTGGAACAGTTCGCGATCGGAAGCGAAAATGTCAATTGCATTGC CATCTATGAGCGAACAAAGTTATAAACCGTGTAAAGCACAATTTACTATACAAATATAAT GTGAACAAAATTATACGAGCAGCATATTGCTGACGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2132#0      ATCCCCCGAGGTTATAATCGATTGGAAACGGTCACTAAACCCGGAACCATGCTTGATCGA 60
consensus_2132#1      ------------------------------------------------------------
                                                                                  

consensus_2132#0      CNAAACGGCAAACGTGGATAGCAAGATCAACAGTTGATTGTGAGTTTTATGAAAACGAAA 120
consensus_2132#1      ------------------------------------------------------------
                                                                                  

consensus_2132#0      TAAGTGGCGCAAAATACTCGAACTCGGACAAGAATTAGCTCCCGCGCAACGTTCCAACCT 180
consensus_2132#1      ------------------------------------------------------------
                                                                                  

consensus_2132#0      CCTCTGGGCCTGGCCGCTCGAGCAGGACGTGGAACGNGNCTCGNGTGAGGTGCTGGCGCG 240
consensus_2132#1      --------CCTGGCCGCTCGAGCAGGACGTGGAACGGCTC---GGTGAGGTG-TGGCGCG 48
                              ****************************   *    ******** *******

consensus_2132#0      ATGTGGAATACGAAATATTTGCTAGCATAGGCTTGTGGTACTTGGTTTGCTTGAGTGGAT 300
consensus_2132#1      ATGTGGAATACGAAAGATT-GCTAGCATAGGCT-GTGGTACT-GGTTTGCTTGAGTGGAT 105
                      *************** *** ************* ******** *****************

consensus_2132#0      CATCGGACTGTGCAAATGAGGCTTATCAGTGTAATCGGGTATAGAACATCGACGAACGAA 360
consensus_2132#1      CATCG-ACTGTGCAAATGAGGCT-ATCAGTGTAATCGG-TATAGAA-ATCGACGAA-GAA 160
                      ***** ***************** ************** ******* ********* ***

consensus_2132#0      TGGTAGAGCTCCAAGTACGCGCCCGTTCGGTACATTCCATTNAGCGTTCGTCAGCGGATC 420
consensus_2132#1      TGGTGGAGCTCCAAGTACGCACCCGTTCGGTACATTCCATTA-GCGTTCGTCAGCGGATC 219
                      **** *************** ********************  *****************

consensus_2132#0      GGAAAGCTCGTTACGAGAGGTAAGCGGGCAAATGGCAGGACGAGCAGCCAGATGCGTTCG 480
consensus_2132#1      GGAAAGCTCGTTACGAGAGGTAA-CGGCCAAATGGCAGGACGAGCAGCCAGATGTGTT-G 277
                      *********************** *** ************************** *** *

consensus_2132#0      ATGTCTTGCTACTTTCAACAACGGTGCTTGCGTTCGAGACCAGTATGTAANAGGAGNTTT 540
consensus_2132#1      ATGTTTTGCTACTT-CAACAACGGTGCT-GCGTTCGAG--CAGTATGTAAAGGA--GTTT 331
                      **** ********* ************* *********  **********  *    ***

consensus_2132#0      ACCTGGTCCGCNTCGCGATACTCACTTGGACCGGGCAGCGGAAAGGGCGTACACACAAAC 600
consensus_2132#1      ACCGG--TCGTTTCGTGATACT-AATTGGACCGGGCCAGGGAAAGGGCGTACACACAAAC 388
                      *** *   **  *** ****** * ***********   *********************

consensus_2132#0      C-ATTGCCTTTGGNACCCGGTGCAGTCGTTTGANGCGTGCATTCGGAAACCTGCTGGAAC 659
consensus_2132#1      CCATTGCCTTTGGCACCCGGTG-AGTCGTTTGAG---CGTGATTGGAAAC-TGCTGGAAC 443
                      * *********** ******** **********     *   * ****** *********

consensus_2132#0      AGNTCGCGGATNCGGN-------------------------------------------- 675
consensus_2132#1      AGTTCGCGATCGGAAGCGAAAATGTCAATTGCATTGCCATCTATGAGCGAACAAAGTTAT 503
                      ** *****                                                    

consensus_2132#0      ------------------------------------------------------------
consensus_2132#1      AAACCGTGTAAAGCACAATTTACTATACAAATATAATGTGAACAAAATTATACGAGCAGC 563
                                                                                  

consensus_2132#0      --------------
consensus_2132#1      ATATTGCTGACGAA 577
                                    




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)