These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2132#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence [ATCCCCCGAGGTTATAATCGATTGGAAACGGTCACTAAACCCGGAACCATGCTTGATCGACNAAACGGCAAACGTGGATAGCAAGATCAACAGTTGATTGTGAGTTTTATGAAAACGAAATAAGTGGCGCAAAATACTCGAACTCGGACAAGAATTAGCTCCCGCGCAACGTTCCAACCTCCTCTGGGCCTGGCCGCTCGAGCAGGACGTGGAACGNGNCTCGNGTGAGGTGCTGGCGCGATGTGGAATACGAAATATTTGCTAGCATAGGCTTGTGGTACTTGGTTTGCTTGAGTGGATCATCGGACTGTGCAAATGAGGCTTATCAGTGTAATCGGGTATAGAACATCGACGAACGAATGGTAGAGCTCCAAGTACGCGCCCGTTCGGTACATTCCATTNAGCGTTCGTCAGCGGATCGGAAAGCTCGTTACGAGAGGTAAGCGGGCAAATGGCAGGACGAGCAGCCAGATGCGTTCGATGTCTTGCTACTTTCAACAACGGTGCTTGCGTTCGAGACCAGTATGTAANAGGAGNTTTACCTGGTCCGCNTCGCGATACTCACTTGGACCGGGCAGCGGAAAGGGCGTACACACAAACCATTGCCTTTGGNACCCGGTGCAGTCGTTTGANGCGTGCATTCGGAAACCTGCTGGAACAGNTCGCGGATNCGGN] [+] EMBL AL934482 [ATCCCCCGAGGTTATAATCGATTGGAAACGGTCACTAAACCCGGAACCATGCTTGATCGACNAAACGGCAAACGTGGATAGCAAGATCAACAGTTGATTGTGAGTTTTATGAAAACGAAATAAGTGGCGCAAAATACTCGAACTCGGACAAGAATTAGCTCCCGCGCAACGTTCCAACCTCCTCTGGGCCTGGCCGCTCGAGCAGGACGTGGAACGNGNCTCGNGTGAGGTGCTGGCGCGATGTGGAATACGAAATATTTGCTAGCATAGGCTTGTGGTACTTGGTTTGCTTGAGTGGATCATCGGACTGTGCAAATGAGGCTTATCAGTGTAATCGGGTATAGAACATCGACGAACGAATGGTAGAGCTCCAAGTACGCGCCCGTTCGGTACATTCCATTNAGCGTTCGTCAGCGGATCGGAAAGCTCGTTACGAGAGGTAAGCGGGCAAATGGCAGGACGAGCAGCCAGATGCGTTCGATGTCTTGCTACTTTCAACAACGGTGCTTGCGTTCGAGACCAGTATGTAANAGGAGNTTTACCTGGTCCGCNTCGCGATACTCACTTGGACCGGGCAGCGGAAAGGGCGTACACACAAACCATTGCCTTTGGNACCCGGTGCAGTCGTTTGANGCGTGCATTCGGAAACCTGCTGGAACAGNTCGCGGATNCGGN] consensusID : consensus_2132#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 577 fasta sequence [CCTGGCCGCTCGAGCAGGACGTGGAACGGCTCGGTGAGGTGTGGCGCGATGTGGAATACGAAAGATTGCTAGCATAGGCTGTGGTACTGGTTTGCTTGAGTGGATCATCGACTGTGCAAATGAGGCTATCAGTGTAATCGGTATAGAAATCGACGAAGAATGGTGGAGCTCCAAGTACGCACCCGTTCGGTACATTCCATTAGCGTTCGTCAGCGGATCGGAAAGCTCGTTACGAGAGGTAACGGCCAAATGGCAGGACGAGCAGCCAGATGTGTTGATGTTTTGCTACTTCAACAACGGTGCTGCGTTCGAGCAGTATGTAAAGGAGTTTACCGGTCGTTTCGTGATACTAATTGGACCGGGCCAGGGAAAGGGCGTACACACAAACCCATTGCCTTTGGCACCCGGTGAGTCGTTTGAGCGTGATTGGAAACTGCTGGAACAGTTCGCGATCGGAAGCGAAAATGTCAATTGCATTGCCATCTATGAGCGAACAAAGTTATAAACCGTGTAAAGCACAATTTACTATACAAATATAATGTGAACAAAATTATACGAGCAGCATATTGCTGACGAA] [-] EMBL CNS09MXD [CCTGGCCGCTCGAGCAGGACGTGGAACGGCTCGGTGAGGTGTGGCGCGATGTGGAATACGAAAGATTGCTAGCATAGGCTGTGGTACTGGTTTGCTTGAGTGGATCATCGACTGTGCAAATGAGGCTATCAGTGTAATCGGTATAGAAATCGACGAAGAATGGTGGAGCTCCAAGTACGCACCCGTTCGGTACATTCCATTAGCGTTCGTCAGCGGATCGGAAAGCTCGTTACGAGAGGTAACGGCCAAATGGCAGGACGAGCAGCCAGATGTGTTGATGTTTTGCTACTTCAACAACGGTGCTGCGTTCGAGCAGTATGTAAAGGAGTTTACCGGTCGTTTCGTGATACTAATTGGACCGGGCCAGGGAAAGGGCGTACACACAAACCCATTGCCTTTGGCACCCGGTGAGTCGTTTGAGCGTGATTGGAAACTGCTGGAACAGTTCGCGATCGGAAGCGAAAATGTCAATTGCATTGCCATCTATGAGCGAACAAAGTTATAAACCGTGTAAAGCACAATTTACTATACAAATATAATGTGAACAAAATTATACGAGCAGCATATTGCTGACGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2132#0 ATCCCCCGAGGTTATAATCGATTGGAAACGGTCACTAAACCCGGAACCATGCTTGATCGA 60 consensus_2132#1 ------------------------------------------------------------ consensus_2132#0 CNAAACGGCAAACGTGGATAGCAAGATCAACAGTTGATTGTGAGTTTTATGAAAACGAAA 120 consensus_2132#1 ------------------------------------------------------------ consensus_2132#0 TAAGTGGCGCAAAATACTCGAACTCGGACAAGAATTAGCTCCCGCGCAACGTTCCAACCT 180 consensus_2132#1 ------------------------------------------------------------ consensus_2132#0 CCTCTGGGCCTGGCCGCTCGAGCAGGACGTGGAACGNGNCTCGNGTGAGGTGCTGGCGCG 240 consensus_2132#1 --------CCTGGCCGCTCGAGCAGGACGTGGAACGGCTC---GGTGAGGTG-TGGCGCG 48 **************************** * ******** ******* consensus_2132#0 ATGTGGAATACGAAATATTTGCTAGCATAGGCTTGTGGTACTTGGTTTGCTTGAGTGGAT 300 consensus_2132#1 ATGTGGAATACGAAAGATT-GCTAGCATAGGCT-GTGGTACT-GGTTTGCTTGAGTGGAT 105 *************** *** ************* ******** ***************** consensus_2132#0 CATCGGACTGTGCAAATGAGGCTTATCAGTGTAATCGGGTATAGAACATCGACGAACGAA 360 consensus_2132#1 CATCG-ACTGTGCAAATGAGGCT-ATCAGTGTAATCGG-TATAGAA-ATCGACGAA-GAA 160 ***** ***************** ************** ******* ********* *** consensus_2132#0 TGGTAGAGCTCCAAGTACGCGCCCGTTCGGTACATTCCATTNAGCGTTCGTCAGCGGATC 420 consensus_2132#1 TGGTGGAGCTCCAAGTACGCACCCGTTCGGTACATTCCATTA-GCGTTCGTCAGCGGATC 219 **** *************** ******************** ***************** consensus_2132#0 GGAAAGCTCGTTACGAGAGGTAAGCGGGCAAATGGCAGGACGAGCAGCCAGATGCGTTCG 480 consensus_2132#1 GGAAAGCTCGTTACGAGAGGTAA-CGGCCAAATGGCAGGACGAGCAGCCAGATGTGTT-G 277 *********************** *** ************************** *** * consensus_2132#0 ATGTCTTGCTACTTTCAACAACGGTGCTTGCGTTCGAGACCAGTATGTAANAGGAGNTTT 540 consensus_2132#1 ATGTTTTGCTACTT-CAACAACGGTGCT-GCGTTCGAG--CAGTATGTAAAGGA--GTTT 331 **** ********* ************* ********* ********** * *** consensus_2132#0 ACCTGGTCCGCNTCGCGATACTCACTTGGACCGGGCAGCGGAAAGGGCGTACACACAAAC 600 consensus_2132#1 ACCGG--TCGTTTCGTGATACT-AATTGGACCGGGCCAGGGAAAGGGCGTACACACAAAC 388 *** * ** *** ****** * *********** ********************* consensus_2132#0 C-ATTGCCTTTGGNACCCGGTGCAGTCGTTTGANGCGTGCATTCGGAAACCTGCTGGAAC 659 consensus_2132#1 CCATTGCCTTTGGCACCCGGTG-AGTCGTTTGAG---CGTGATTGGAAAC-TGCTGGAAC 443 * *********** ******** ********** * * ****** ********* consensus_2132#0 AGNTCGCGGATNCGGN-------------------------------------------- 675 consensus_2132#1 AGTTCGCGATCGGAAGCGAAAATGTCAATTGCATTGCCATCTATGAGCGAACAAAGTTAT 503 ** ***** consensus_2132#0 ------------------------------------------------------------ consensus_2132#1 AAACCGTGTAAAGCACAATTTACTATACAAATATAATGTGAACAAAATTATACGAGCAGC 563 consensus_2132#0 -------------- consensus_2132#1 ATATTGCTGACGAA 577 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||