cluster # 2135

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 2135 cluster # 2135 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2135#0 length = 698 sequences # 1

consensus_2135#1 length = 452 sequences # 1

consensusID : consensus_2135#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 698
fasta sequence

                              [CCGCGCTGAAGGCAACGCTGCTCGATACACCGAATCTGGCCCAAATAACGGAGCGCGAGTCGGCACACCCGACCGATCTCGCCAGTCCCACGTCACCGTCGGTGGGGGGCGACGGTGCCGAGTCGCTCGGAAAGCCGAGCGTCGGCAGCGACGAAGAGGAGCCGGAAGCGAACGGTGCCACGCGCAAGGGAGCGGACGAGCCGTCGAGCAAGACACCGTCGCCGCTGCGGCGGGCCGTCGCGCAGCGCGGCAGCCTGCGGGTGACGCCCGCGCCCGTGCACGGCAACCAGGTGAAGCAGTGGCAACCGACCCCGGAGTGGGTACAGTCCTGGCGCTCGAAGCTGCCGCTGCAAACGATCATGCGCCTGCTGCAGGTGCTGGTACCCCAGGTGGAAAAGATCTGCATCGACAAGGGCCTTACCGACGAGTCGGAGATACTGAAGTTTCTGCAGCACGGTACGCTGGTGGGGCTGCTGCCGGTACCGCACCCGATCCTGATCCGCAAGTACCAGGCGAACGGGGGCACGACCGCCTGGTTCCGCACGTACATGTGGGGCGTGATCTATCTGCGCAACGTCGATCCGGCCGTCTGGTACGACACGGAGGTGAAGCTGTTCGAGATACAGCGCGTCTAGATGGCGGGTGGGCTCGTCGCTTGGTAAGCAGTAAAACTAGCAAAGTTTCTTATTTCCCCCTCG]

[+] EMBL BM600340             [CCGCGCTGAAGGCAACGCTGCTCGATACACCGAATCTGGCCCAAATAACGGAGCGCGAGTCGGCACACCCGACCGATCTCGCCAGTCCCACGTCACCGTCGGTGGGGGGCGACGGTGCCGAGTCGCTCGGAAAGCCGAGCGTCGGCAGCGACGAAGAGGAGCCGGAAGCGAACGGTGCCACGCGCAAGGGAGCGGACGAGCCGTCGAGCAAGACACCGTCGCCGCTGCGGCGGGCCGTCGCGCAGCGCGGCAGCCTGCGGGTGACGCCCGCGCCCGTGCACGGCAACCAGGTGAAGCAGTGGCAACCGACCCCGGAGTGGGTACAGTCCTGGCGCTCGAAGCTGCCGCTGCAAACGATCATGCGCCTGCTGCAGGTGCTGGTACCCCAGGTGGAAAAGATCTGCATCGACAAGGGCCTTACCGACGAGTCGGAGATACTGAAGTTTCTGCAGCACGGTACGCTGGTGGGGCTGCTGCCGGTACCGCACCCGATCCTGATCCGCAAGTACCAGGCGAACGGGGGCACGACCGCCTGGTTCCGCACGTACATGTGGGGCGTGATCTATCTGCGCAACGTCGATCCGGCCGTCTGGTACGACACGGAGGTGAAGCTGTTCGAGATACAGCGCGTCTAGATGGCGGGTGGGCTCGTCGCTTGGTAAGCAGTAAAACTAGCAAAGTTTCTTATTTCCCCCTCG]




>consensus_2135#0
CCGCGCTGAAGGCAACGCTGCTCGATACACCGAATCTGGCCCAAATAACGGAGCGCGAGT
CGGCACACCCGACCGATCTCGCCAGTCCCACGTCACCGTCGGTGGGGGGCGACGGTGCCG
AGTCGCTCGGAAAGCCGAGCGTCGGCAGCGACGAAGAGGAGCCGGAAGCGAACGGTGCCA
CGCGCAAGGGAGCGGACGAGCCGTCGAGCAAGACACCGTCGCCGCTGCGGCGGGCCGTCG
CGCAGCGCGGCAGCCTGCGGGTGACGCCCGCGCCCGTGCACGGCAACCAGGTGAAGCAGT
GGCAACCGACCCCGGAGTGGGTACAGTCCTGGCGCTCGAAGCTGCCGCTGCAAACGATCA
TGCGCCTGCTGCAGGTGCTGGTACCCCAGGTGGAAAAGATCTGCATCGACAAGGGCCTTA
CCGACGAGTCGGAGATACTGAAGTTTCTGCAGCACGGTACGCTGGTGGGGCTGCTGCCGG
TACCGCACCCGATCCTGATCCGCAAGTACCAGGCGAACGGGGGCACGACCGCCTGGTTCC
GCACGTACATGTGGGGCGTGATCTATCTGCGCAACGTCGATCCGGCCGTCTGGTACGACA
CGGAGGTGAAGCTGTTCGAGATACAGCGCGTCTAGATGGCGGGTGGGCTCGTCGCTTGGT
AAGCAGTAAAACTAGCAAAGTTTCTTATTTCCCCCTCG

consensusID : consensus_2135#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 452
fasta sequence

                              [CGCAACGTCGATCCGGCCGTCTGGTACGACACGGAGGTGAAGCTGTTCGAGATACAGCGCGTCTAGGTGCCGGGAGGAGTCTAGGTTCGTCGTTTGGTAAGCAGCAAGCTAGCTAAGTTTCTTATTTCCCCCTCGTACTAACCACAAAAAACAAAACACAAAATCCTCTCACACTCATCTTCATGCTCATCTATGTGTGTACGCTTTACTAACACATTTCGCTTACAGTACTGAAGGTTTTGGAGGAAAATGAAGATGCCTTGAGAATGTAGCGTAGAGAGAGAGATAGATAGTAGAGGAATAGTGAAGCAGCAGCAAACGAGGATAGGGTTATTTCACCCTTCTATCCCAACCCCATCTGACCGACCATTCCGTCTAAGTCATTTCAGAAAATCTTAATCACACGATAAACGAAAAAAGAAACTTAAACAAGTAAGATAATCTGTAAACCA]

[+] EMBL BX605512             [CGCAACGTCGATCCGGCCGTCTGGTACGACACGGAGGTGAAGCTGTTCGAGATACAGCGCGTCTAGGTGCCGGGAGGAGTCTAGGTTCGTCGTTTGGTAAGCAGCAAGCTAGCTAAGTTTCTTATTTCCCCCTCGTACTAACCACAAAAAACAAAACACAAAATCCTCTCACACTCATCTTCATGCTCATCTATGTGTGTACGCTTTACTAACACATTTCGCTTACAGTACTGAAGGTTTTGGAGGAAAATGAAGATGCCTTGAGAATGTAGCGTAGAGAGAGAGATAGATAGTAGAGGAATAGTGAAGCAGCAGCAAACGAGGATAGGGTTATTTCACCCTTCTATCCCAACCCCATCTGACCGACCATTCCGTCTAAGTCATTTCAGAAAATCTTAATCACACGATAAACGAAAAAAGAAACTTAAACAAGTAAGATAATCTGTAAACCA]




>consensus_2135#1
CGCAACGTCGATCCGGCCGTCTGGTACGACACGGAGGTGAAGCTGTTCGAGATACAGCGC
GTCTAGGTGCCGGGAGGAGTCTAGGTTCGTCGTTTGGTAAGCAGCAAGCTAGCTAAGTTT
CTTATTTCCCCCTCGTACTAACCACAAAAAACAAAACACAAAATCCTCTCACACTCATCT
TCATGCTCATCTATGTGTGTACGCTTTACTAACACATTTCGCTTACAGTACTGAAGGTTT
TGGAGGAAAATGAAGATGCCTTGAGAATGTAGCGTAGAGAGAGAGATAGATAGTAGAGGA
ATAGTGAAGCAGCAGCAAACGAGGATAGGGTTATTTCACCCTTCTATCCCAACCCCATCT
GACCGACCATTCCGTCTAAGTCATTTCAGAAAATCTTAATCACACGATAAACGAAAAAAG
AAACTTAAACAAGTAAGATAATCTGTAAACCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2135#0      CCGCGCTGAAGGCAACGCTGCTCGATACACCGAATCTGGCCCAAATAACGGAGCGCGAGT 60
consensus_2135#1      ------------------------------------------------------------
                                                                                  

consensus_2135#0      CGGCACACCCGACCGATCTCGCCAGTCCCACGTCACCGTCGGTGGGGGGCGACGGTGCCG 120
consensus_2135#1      ------------------------------------------------------------
                                                                                  

consensus_2135#0      AGTCGCTCGGAAAGCCGAGCGTCGGCAGCGACGAAGAGGAGCCGGAAGCGAACGGTGCCA 180
consensus_2135#1      ------------------------------------------------------------
                                                                                  

consensus_2135#0      CGCGCAAGGGAGCGGACGAGCCGTCGAGCAAGACACCGTCGCCGCTGCGGCGGGCCGTCG 240
consensus_2135#1      --CGCAACGT--CGATCCGGCCGTCTGGTACGACACGG----AGGTGAAGCTGTTCGAGA 52
                        ***** *   **  *  ******  * * ***** *     * **  ** *  **   

consensus_2135#0      CGCAGCGCGGCAGCCTGC-GGGTGACGCCCGCGCCCGT-GCACGGCAACCAGGTGAAGCA 298
consensus_2135#1      TACAGCGCGTCTAGGTGCCGGGAGGAGTCTAGGTTCGTCGTTTGGTAAGCAGC--AAGC- 109
                        ******* *    *** *** *  * *   *  *** *   ** ** ***   **** 

consensus_2135#0      GTGGCAACCGACCCCGGAGTGGGTACAGTCCTGGCGCTCGAAGCTGCCGCTGCAAACGAT 358
consensus_2135#1      -TAGCTAA-GTTTCTTATTTCCCCCTCGTACTAACCACAAAAAACAAAACACAAAATCCT 167
                       * ** *  *   *     *       ** **  *     **       *   ***   *

consensus_2135#0      CATGCGCCTGCTGCAGGTGCTGGTACCCCAGGTGGAAAAGATCTGCATCGACAAGGGCCT 418
consensus_2135#1      CTCACACTCATCTTCA-TGCTCAT---CTATGTGTGTACGCTTTACTAACACATTTCGCT 223
                      *   * *          ****  *   * * ***   * * * * *    ***     **

consensus_2135#0      TACCGACGAGTCGGAGATACTGAAGTTTCTGCAGCACGGTACGCTGGTGGGGCTGCTGCC 478
consensus_2135#1      TACAG------------TACTGAAGGTTTTGGAGGAAAAT--------GAAGATGCC-TT 262
                      *** *            ******** ** ** ** *   *        *  * ***    

consensus_2135#0      GGTACCGCACCCGATCCTGATCCGCAAGTACCAGGCGAACGGGGGCACGACCGCCTGGTT 538
consensus_2135#1      GAGAATGTAGCGTAGAGAGAGAGATAGATAGTAGAGGAATAGTGAAGCAGCAGCAAACGA 322
                      *  *  * * *  *    **     *  **  **  ***  * *   *  * **      

consensus_2135#0      CCGCACGTACATGTGGGGCGTGATCTATCTGCGCAACGTCGATCCGGCCGTCTGGTACGA 598
consensus_2135#1      GGATAGGGTTATTTCACCC---TTCTATCCCAACCCCATCTGACCGACCATTCCGTCTAA 379
                          * *   ** *    *    ******    *  * **   *** ** *   **   *

consensus_2135#0      CACGGAGGTGAAGCTGTTCGAGATACAGCGCGTCTAGATGGCGGGTGGGCTCGTCGCTTG 658
consensus_2135#1      GTCATTTCAGAAAATCTTAATCACACGATAAACGAAAAAAGAAACTTAAACAA--GTAAG 437
                        *      ***  * **    * **         * *  *    *         *   *

consensus_2135#0      GTAAGCAGTAAAACTAGCAAAGTTTCTTATTTCCCCCTCG 698
consensus_2135#1      ATAATCTGTAAACCA------------------------- 452
                       *** * ***** *