cluster # 2137

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Anopheles gambiae
cluster # 2137 cluster # 2137 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2137#0 length = 717 sequences # 1

consensus_2137#1 length = 438 sequences # 1

consensusID : consensus_2137#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 717
fasta sequence

                              [AATTAATGTATTAGTTAAAATGATTAATTTTGTAACAATGAATTCACCAGCTCTAGCTGAGATTTTCCTGTATAGTCATATGGTATTGAATGTTCAATGAATTAATTGCAATTGAACTATCATGTTGCTTACCTTATGGGTACAGATGAATTTGGCATCGTGTTTTAACTTCATATCTGCAAACACCATTTGCAGTGACTTAATCTGCATCATTATAGAACGTTGAAAAATTTGTAAATTATTTTTACCTGGGATAGTCATGTTTGATATTATGTCATACATATCTGTTAAAGCACTAACTTGGTCATCGCTAGCAGTATATGCTTTTTTAAAATCCAATTTTGCGAAAGGTGTGTAAGAATTAGATATGCTAAACCACACATCCACCTTCTCTATAAAATTAGCCAAAATTTTAGCATTATCATCGTCCGGAAAATATGTACGGAGAGCTACAGCGGTTGTACGAGACAATAACTCTGCTGCCCTTCGAACATTTTGTCGTTCTTGGGGAGTCATGTCTATATGGGATGTTGTGAGTTTAAATAAAGGAGTCATTTCTGACTCCATTCTTTTGGCTACCATACGCAACAGATTGGTGGTTTCGATAAGTTGGCCGTTGTACTCAAAACCATGATCTAGAAGCCAATTCCTTAACAACTTCAGCAAATGAGGTGTATCAGGGATCACATACACATTCTTATTCGTTTTTGGATGTGG]

[+] EMBL BX628060             [AATTAATGTATTAGTTAAAATGATTAATTTTGTAACAATGAATTCACCAGCTCTAGCTGAGATTTTCCTGTATAGTCATATGGTATTGAATGTTCAATGAATTAATTGCAATTGAACTATCATGTTGCTTACCTTATGGGTACAGATGAATTTGGCATCGTGTTTTAACTTCATATCTGCAAACACCATTTGCAGTGACTTAATCTGCATCATTATAGAACGTTGAAAAATTTGTAAATTATTTTTACCTGGGATAGTCATGTTTGATATTATGTCATACATATCTGTTAAAGCACTAACTTGGTCATCGCTAGCAGTATATGCTTTTTTAAAATCCAATTTTGCGAAAGGTGTGTAAGAATTAGATATGCTAAACCACACATCCACCTTCTCTATAAAATTAGCCAAAATTTTAGCATTATCATCGTCCGGAAAATATGTACGGAGAGCTACAGCGGTTGTACGAGACAATAACTCTGCTGCCCTTCGAACATTTTGTCGTTCTTGGGGAGTCATGTCTATATGGGATGTTGTGAGTTTAAATAAAGGAGTCATTTCTGACTCCATTCTTTTGGCTACCATACGCAACAGATTGGTGGTTTCGATAAGTTGGCCGTTGTACTCAAAACCATGATCTAGAAGCCAATTCCTTAACAACTTCAGCAAATGAGGTGTATCAGGGATCACATACACATTCTTATTCGTTTTTGGATGTGG]




>consensus_2137#0
AATTAATGTATTAGTTAAAATGATTAATTTTGTAACAATGAATTCACCAGCTCTAGCTGA
GATTTTCCTGTATAGTCATATGGTATTGAATGTTCAATGAATTAATTGCAATTGAACTAT
CATGTTGCTTACCTTATGGGTACAGATGAATTTGGCATCGTGTTTTAACTTCATATCTGC
AAACACCATTTGCAGTGACTTAATCTGCATCATTATAGAACGTTGAAAAATTTGTAAATT
ATTTTTACCTGGGATAGTCATGTTTGATATTATGTCATACATATCTGTTAAAGCACTAAC
TTGGTCATCGCTAGCAGTATATGCTTTTTTAAAATCCAATTTTGCGAAAGGTGTGTAAGA
ATTAGATATGCTAAACCACACATCCACCTTCTCTATAAAATTAGCCAAAATTTTAGCATT
ATCATCGTCCGGAAAATATGTACGGAGAGCTACAGCGGTTGTACGAGACAATAACTCTGC
TGCCCTTCGAACATTTTGTCGTTCTTGGGGAGTCATGTCTATATGGGATGTTGTGAGTTT
AAATAAAGGAGTCATTTCTGACTCCATTCTTTTGGCTACCATACGCAACAGATTGGTGGT
TTCGATAAGTTGGCCGTTGTACTCAAAACCATGATCTAGAAGCCAATTCCTTAACAACTT
CAGCAAATGAGGTGTATCAGGGATCACATACACATTCTTATTCGTTTTTGGATGTGG

consensusID : consensus_2137#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 438
fasta sequence

                              [TCCCCAAAATCATAAGACGAATTCGATAAATGCAACTTAGAGGTGAGGGATGGTGCATATACACCACCNAATTTGCCTAAGCTGCGAGAAAAAATTCTCTAATACGTCTTGGTTTAACTTATGGGTACAGATNGAATTTGGCATCGTNGTTTTAACTTCATATNCNNCAAACACCATTTGCAGTGGACTTAATGCTNGCATGCATTATNNAACGTTGAGNAAATTTTGTAAACCATTTTTACCTGGGATAGTNATNGTTTGATATTATGTCATACATATCTGTTAAAGCACTAACTTGGTNCATCGCTAGCAGTATATGCTTTTTTAAAATCCAATTTTGCGAAAGGTGTGTAAGAATTAGATATGCTAAACCACACATCCACCTTCTCTATAAAATTAGCCAAAATTTTAGCATTATCATANTCCGCCTCGTGCCGT]

[-] EMBL BX619686             [TCCCCAAAATCATAAGACGAATTCGATAAATGCAACTTAGAGGTGAGGGATGGTGCATATACACCACCNAATTTGCCTAAGCTGCGAGAAAAAATTCTCTAATACGTCTTGGTTTAACTTATGGGTACAGATNGAATTTGGCATCGTNGTTTTAACTTCATATNCNNCAAACACCATTTGCAGTGGACTTAATGCTNGCATGCATTATNNAACGTTGAGNAAATTTTGTAAACCATTTTTACCTGGGATAGTNATNGTTTGATATTATGTCATACATATCTGTTAAAGCACTAACTTGGTNCATCGCTAGCAGTATATGCTTTTTTAAAATCCAATTTTGCGAAAGGTGTGTAAGAATTAGATATGCTAAACCACACATCCACCTTCTCTATAAAATTAGCCAAAATTTTAGCATTATCATANTCCGCCTCGTGCCGT]




>consensus_2137#1
TCCCCAAAATCATAAGACGAATTCGATAAATGCAACTTAGAGGTGAGGGATGGTGCATAT
ACACCACCNAATTTGCCTAAGCTGCGAGAAAAAATTCTCTAATACGTCTTGGTTTAACTT
ATGGGTACAGATNGAATTTGGCATCGTNGTTTTAACTTCATATNCNNCAAACACCATTTG
CAGTGGACTTAATGCTNGCATGCATTATNNAACGTTGAGNAAATTTTGTAAACCATTTTT
ACCTGGGATAGTNATNGTTTGATATTATGTCATACATATCTGTTAAAGCACTAACTTGGT
NCATCGCTAGCAGTATATGCTTTTTTAAAATCCAATTTTGCGAAAGGTGTGTAAGAATTA
GATATGCTAAACCACACATCCACCTTCTCTATAAAATTAGCCAAAATTTTAGCATTATCA
TANTCCGCCTCGTGCCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2137#0      AATTAATGTATTAGTTAAAATGATTAATTTTGTAACAATGAATTCACCAGCTCTAGCTGA 60
consensus_2137#1      --------------------TCCCCAAAATCATAA-GACGAATTCGATAAATGCAACTTA 39
                                          *    **  *  ***  * ******   *  *  * ** *

consensus_2137#0      GATTTTCCTGTATAGT---CATATGGTATTGAATGT-TCAATGAATTAATTGCAATTGAA 116
consensus_2137#1      GAGGTGAG-GGATGGTGCATATACACCACCNAATTTGCCTAAGCTGCGAGAAAAAATTCT 98
                      **  *    * ** **    ***    *   *** *  * * *     *    ** *   

consensus_2137#0      CTATCATGTT---GCTTACCTTATGGGTACAGATG-AATTTGGCATCGTG-TTTTAACTT 171
consensus_2137#1      CTAATACGTCTTGGTTTAACTTATGGGTACAGATNGAATTTGGCATCGTNGTTTTAACTT 158
                      ***  * **    * *** ***************  *************  *********

consensus_2137#0      CATATC-TGCAAACACCATTTGCAGTG-ACTTAAT--CTGCAT-CATTATAGAACGTTGA 226
consensus_2137#1      CATATNCNNCAAACACCATTTGCAGTGGACTTAATGCTNGCATGCATTATNNAACGTTGA 218
                      *****    ****************** *******    **** ******  ********

consensus_2137#0      AAAA--TTTGTAAATTATTTTTACCTGGGATAGTCATG-TTTGATATTATGTCATACATA 283
consensus_2137#1      GNAAATTTTGTAAACCATTTTTACCTGGGATAGTNATNGTTTGATATTATGTCATACATA 278
                        **  ********  ****************** **  *********************

consensus_2137#0      TCTGTTAAAGCACTAACTTGGTC-ATCGCTAGCAGTATATGCTTTTTTAAAATCCAATTT 342
consensus_2137#1      TCTGTTAAAGCACTAACTTGGTNCATCGCTAGCAGTATATGCTTTTTTAAAATCCAATTT 338
                      **********************  ************************************

consensus_2137#0      TGCGAAAGGTGTGTAAGAATTAGATATGCTAAACCACACATCCACCTTCTCTATAAAATT 402
consensus_2137#1      TGCGAAAGGTGTGTAAGAATTAGATATGCTAAACCACACATCCACCTTCTCTATAAAATT 398
                      ************************************************************

consensus_2137#0      AGCCAAAATTTTAGCATTATCATCGTCCGGAAAATAT-GTACGGAGAGCTACAGCGGTTG 461
consensus_2137#1      AGCCAAAATTTTAGCATTATCATANTCCGCCTCGTGCCGT-------------------- 438
                      ***********************  ****     *   **                    

consensus_2137#0      TACGAGACAATAACTCTGCTGCCCTTCGAACATTTTGTCGTTCTTGGGGAGTCATGTCTA 521
consensus_2137#1      ------------------------------------------------------------
                                                                                  

consensus_2137#0      TATGGGATGTTGTGAGTTTAAATAAAGGAGTCATTTCTGACTCCATTCTTTTGGCTACCA 581
consensus_2137#1      ------------------------------------------------------------
                                                                                  

consensus_2137#0      TACGCAACAGATTGGTGGTTTCGATAAGTTGGCCGTTGTACTCAAAACCATGATCTAGAA 641
consensus_2137#1      ------------------------------------------------------------
                                                                                  

consensus_2137#0      GCCAATTCCTTAACAACTTCAGCAAATGAGGTGTATCAGGGATCACATACACATTCTTAT 701
consensus_2137#1      ------------------------------------------------------------
                                                                                  

consensus_2137#0      TCGTTTTTGGATGTGG 717
consensus_2137#1      ----------------