These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2138#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 721 fasta sequence [GCAGCGTACTGGGGATCGGACGTGGATTTATGGGTGTTTGGCACAACGATTACGTCCTCCTGCCTGTTTACGATGCTGCTACACTGTGCCATAGAAATTAAATCATGGACAATCTTGCATGTCTTATCGATAGTGATTAGTTTGGTGTCGTTCTATGCGTTTGCATTTGCGTACAATTCGGTTTGTGTCAACTGCTTCGGGTTGCCGTCCAATTATTGGGTTATTCATATGAGCATGAGTACAATACAGTATTATCTGATTACGCTGCTTACTTCCGTACTTGCCCTGCTGCCACGATTCACGTATCGTGTCATCAAAAATACCATTTGGCCCTGCGAAGGTGTACGGGTGACACTGCAGTACAAAGAAGAAAAGCGAAGAGGTGAGAATCTGCTGGTAACCTGGTCTCGTTCGACGTCTGCCTCATCCATATTCAGGTACTTAACACACACAACCTCAAGCAATCACTCGAAATCCAGTACGCTGATCACGAGAAAGCGTTCCGCTACGACCACTGCCGTCGGTGGAATACTCGAGCGCAACGCTCCACGGCAGCGATTTGGCTATTAGGCGAATGTCGATGTCGTCGGTCTCGCCATAGCTTCTACCCAGCGTGAACCCAGCAACAGATCCCAATGAAATGTCAATGGAATGTTGGGAAAGAATGGAAACGCGCGCATATCAGCATGTGCACATTTGTCCTCAATCCTCAATCTCTGTG] [+] EMBL BX610022 [GCAGCGTACTGGGGATCGGACGTGGATTTATGGGTGTTTGGCACAACGATTACGTCCTCCTGCCTGTTTACGATGCTGCTACACTGTGCCATAGAAATTAAATCATGGACAATCTTGCATGTCTTATCGATAGTGATTAGTTTGGTGTCGTTCTATGCGTTTGCATTTGCGTACAATTCGGTTTGTGTCAACTGCTTCGGGTTGCCGTCCAATTATTGGGTTATTCATATGAGCATGAGTACAATACAGTATTATCTGATTACGCTGCTTACTTCCGTACTTGCCCTGCTGCCACGATTCACGTATCGTGTCATCAAAAATACCATTTGGCCCTGCGAAGGTGTACGGGTGACACTGCAGTACAAAGAAGAAAAGCGAAGAGGTGAGAATCTGCTGGTAACCTGGTCTCGTTCGACGTCTGCCTCATCCATATTCAGGTACTTAACACACACAACCTCAAGCAATCACTCGAAATCCAGTACGCTGATCACGAGAAAGCGTTCCGCTACGACCACTGCCGTCGGTGGAATACTCGAGCGCAACGCTCCACGGCAGCGATTTGGCTATTAGGCGAATGTCGATGTCGTCGGTCTCGCCATAGCTTCTACCCAGCGTGAACCCAGCAACAGATCCCAATGAAATGTCAATGGAATGTTGGGAAAGAATGGAAACGCGCGCATATCAGCATGTGCACATTTGTCCTCAATCCTCAATCTCTGTG] consensusID : consensus_2138#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 635 fasta sequence [CCGCGCAGTTGTATCAGCATGGACGTCGGGGGAAAGGCTACAAGTGGTCTACCTTTTGGATTGTGATGCTCGATGCAGTGTACCAGAGTTTGGTGATATTTTTCGTAGCAAAGGCAGCGTACTGGGGATCGGACGTGGATTTATGGGTGTTTGGCACAACGATTACGTCCTCCTGCCTGTTTACGATGCTGCTACACTGTGCCATAGAAATCAAATCATGGACAATCTTGCATGTCTTATCGATAGTGATTAGTTTGGTGTCGTTCTATGCGTTTGCATTTGCGTACAATTCGGTTTGTGTCAACTGCTTCGGGTTGCCGTCCAATTATTGGGTTATTCATATGAGCATGAGTACAATACAGTATTATCTGATTACGCTGCTTACTTCCGTACTTGCCCTGCTGCCACGATTCACGTATCGTGTCATCAAAAATACCATTTGGCCCTGCGAAGGTGTACGGGTGACACTGCAGTACAAAGAAGAAAAACGAAGAGAACCTCCCATTACAGGACTTCGCATAAGGCTGTAGACGGCAGATAACATGGCGCTTGCAGCAAAATTAAGTATACAGATATACAATGTTTGCCAATCGCCCCGTCCCGTTGTCATTCTTTGCATTGGTATGAAAAGCTTT] [+] EMBL BM636081 [CCGCGCAGTTGTATCAGCATGGACGTCGGGGGAAAGGCTACAAGTGGTCTACCTTTTGGATTGTGATGCTCGATGCAGTGTACCAGAGTTTGGTGATATTTTTCGTAGCAAAGGCAGCGTACTGGGGATCGGACGTGGATTTATGGGTGTTTGGCACAACGATTACGTCCTCCTGCCTGTTTACGATGCTGCTACACTGTGCCATAGAAATCAAATCATGGACAATCTTGCATGTCTTATCGATAGTGATTAGTTTGGTGTCGTTCTATGCGTTTGCATTTGCGTACAATTCGGTTTGTGTCAACTGCTTCGGGTTGCCGTCCAATTATTGGGTTATTCATATGAGCATGAGTACAATACAGTATTATCTGATTACGCTGCTTACTTCCGTACTTGCCCTGCTGCCACGATTCACGTATCGTGTCATCAAAAATACCATTTGGCCCTGCGAAGGTGTACGGGTGACACTGCAGTACAAAGAAGAAAAACGAAGAGAACCTCCCATTACAGGACTTCGCATAAGGCTGTAGACGGCAGATAACATGGCGCTTGCAGCAAAATTAAGTATACAGATATACAATGTTTGCCAATCGCCCCGTCCCGTTGTCATTCTTTGCATTGGTATGAAAAGCTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2138#0 ------------------------------------------------------------ consensus_2138#1 CCGCGCAGTTGTATCAGCATGGACGTCGGGGGAAAGGCTACAAGTGGTCTACCTTTTGGA 60 consensus_2138#0 -----------------------------------------------------GCAGCGT 7 consensus_2138#1 TTGTGATGCTCGATGCAGTGTACCAGAGTTTGGTGATATTTTTCGTAGCAAAGGCAGCGT 120 ******* consensus_2138#0 ACTGGGGATCGGACGTGGATTTATGGGTGTTTGGCACAACGATTACGTCCTCCTGCCTGT 67 consensus_2138#1 ACTGGGGATCGGACGTGGATTTATGGGTGTTTGGCACAACGATTACGTCCTCCTGCCTGT 180 ************************************************************ consensus_2138#0 TTACGATGCTGCTACACTGTGCCATAGAAATTAAATCATGGACAATCTTGCATGTCTTAT 127 consensus_2138#1 TTACGATGCTGCTACACTGTGCCATAGAAATCAAATCATGGACAATCTTGCATGTCTTAT 240 ******************************* **************************** consensus_2138#0 CGATAGTGATTAGTTTGGTGTCGTTCTATGCGTTTGCATTTGCGTACAATTCGGTTTGTG 187 consensus_2138#1 CGATAGTGATTAGTTTGGTGTCGTTCTATGCGTTTGCATTTGCGTACAATTCGGTTTGTG 300 ************************************************************ consensus_2138#0 TCAACTGCTTCGGGTTGCCGTCCAATTATTGGGTTATTCATATGAGCATGAGTACAATAC 247 consensus_2138#1 TCAACTGCTTCGGGTTGCCGTCCAATTATTGGGTTATTCATATGAGCATGAGTACAATAC 360 ************************************************************ consensus_2138#0 AGTATTATCTGATTACGCTGCTTACTTCCGTACTTGCCCTGCTGCCACGATTCACGTATC 307 consensus_2138#1 AGTATTATCTGATTACGCTGCTTACTTCCGTACTTGCCCTGCTGCCACGATTCACGTATC 420 ************************************************************ consensus_2138#0 GTGTCATCAAAAATACCATTTGGCCCTGCGAAGGTGTACGGGTGACACTGCAGTACAAAG 367 consensus_2138#1 GTGTCATCAAAAATACCATTTGGCCCTGCGAAGGTGTACGGGTGACACTGCAGTACAAAG 480 ************************************************************ consensus_2138#0 AAGAAAAGCGAAGAGGTGAGAATCTGCTGGTAACCTGGTCTCGTTCGACGTC-TGCCTCA 426 consensus_2138#1 AAGAAAAACGAAGAG-----AACCT-CCCATTACAGGACTTCGCATAAGGCTGTAGACGG 534 ******* ******* ** ** * * ** * *** * * * consensus_2138#0 TCCATATTCAGGTACTTAACACACACAACCTCAAGCAATCACTCGAAATCCAGTAC--GC 484 consensus_2138#1 CAGATAACATGGCGCTTG-CA---GCAAAATTAAGTATACA---GATATACAATGTTTGC 587 *** ** *** ** *** * *** * ** ** ** ** * ** consensus_2138#0 TGATCACGAGAAAGCGTTCCGCTACGACCACTGCCGTCGGT--GGAATACTCGAGCGCAA 542 consensus_2138#1 CAATCGCCC-----CGTCCCGTTGTCATTCTTTGCATTGGTATGAAAAGCTTT------- 635 *** * *** *** * * * * * *** * ** ** consensus_2138#0 CGCTCCACGGCAGCGATTTGGCTATTAGGCGAATGTCGATGTCGTCGGTCTCGCCATAGC 602 consensus_2138#1 ------------------------------------------------------------ consensus_2138#0 TTCTACCCAGCGTGAACCCAGCAACAGATCCCAATGAAATGTCAATGGAATGTTGGGAAA 662 consensus_2138#1 ------------------------------------------------------------ consensus_2138#0 GAATGGAAACGCGCGCATATCAGCATGTGCACATTTGTCCTCAATCCTCAATCTCTGTG 721 consensus_2138#1 ----------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||