cluster # 2141

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Anopheles gambiae
cluster # 2141 cluster # 2141 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2141#0 length = 612 sequences # 1

consensus_2141#1 length = 130 sequences # 1

consensusID : consensus_2141#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 612
fasta sequence

                              [CCGAACGAGACCACTTCAACAAACTCTACCACGGCACTAATGAAGTGATACACGAGCTCTGCGAGGAAGGCCCATATCAGGAAGACTTTCTTAGACATGCACCGTGCATGCGGCATGTGAAAAAAGACTACGAGGTGTGTGCGATCCACTACCAGAGCACCATGGCGAAGATAGGCCAGTCGGTGGCAACGACAACCACCACGACGGTAGCGTCGTCCATCTACCCAACAATGGCCACACATCCGGCGGCCGTCATGAGCAATGGTGGTGGGCAGTACCACAGCGGTGACATGAGTCAGCATCAGCATCACCATCACAGACAGCAGCAGCAGCAGCACGAACATTTGGGCCGAAGCCATCCAAACAGCACCAAGTCGGTGGAGGATGCGGAGGAAGAACGGCTTAAAACGGTTTGCTGTGCCTTCCAGAAGTACATGCAGTGCTCGGAGTTTACGGTGCGGCATGCCTGCGGCGACGAGACGGCGCTGTTCACGCGCAAATTCCTCGACAAGATGTCCAACACGTTGATGCGGATGCACTGCGTCGATTACACGCCGGAAAGTGGCAAATGCCGGGATTACTTCAGCTCAAGCGCCACCCCGACGGGTCTAA]

[+] EMBL BM638422             [CCGAACGAGACCACTTCAACAAACTCTACCACGGCACTAATGAAGTGATACACGAGCTCTGCGAGGAAGGCCCATATCAGGAAGACTTTCTTAGACATGCACCGTGCATGCGGCATGTGAAAAAAGACTACGAGGTGTGTGCGATCCACTACCAGAGCACCATGGCGAAGATAGGCCAGTCGGTGGCAACGACAACCACCACGACGGTAGCGTCGTCCATCTACCCAACAATGGCCACACATCCGGCGGCCGTCATGAGCAATGGTGGTGGGCAGTACCACAGCGGTGACATGAGTCAGCATCAGCATCACCATCACAGACAGCAGCAGCAGCAGCACGAACATTTGGGCCGAAGCCATCCAAACAGCACCAAGTCGGTGGAGGATGCGGAGGAAGAACGGCTTAAAACGGTTTGCTGTGCCTTCCAGAAGTACATGCAGTGCTCGGAGTTTACGGTGCGGCATGCCTGCGGCGACGAGACGGCGCTGTTCACGCGCAAATTCCTCGACAAGATGTCCAACACGTTGATGCGGATGCACTGCGTCGATTACACGCCGGAAAGTGGCAAATGCCGGGATTACTTCAGCTCAAGCGCCACCCCGACGGGTCTAA]




>consensus_2141#0
CCGAACGAGACCACTTCAACAAACTCTACCACGGCACTAATGAAGTGATACACGAGCTCT
GCGAGGAAGGCCCATATCAGGAAGACTTTCTTAGACATGCACCGTGCATGCGGCATGTGA
AAAAAGACTACGAGGTGTGTGCGATCCACTACCAGAGCACCATGGCGAAGATAGGCCAGT
CGGTGGCAACGACAACCACCACGACGGTAGCGTCGTCCATCTACCCAACAATGGCCACAC
ATCCGGCGGCCGTCATGAGCAATGGTGGTGGGCAGTACCACAGCGGTGACATGAGTCAGC
ATCAGCATCACCATCACAGACAGCAGCAGCAGCAGCACGAACATTTGGGCCGAAGCCATC
CAAACAGCACCAAGTCGGTGGAGGATGCGGAGGAAGAACGGCTTAAAACGGTTTGCTGTG
CCTTCCAGAAGTACATGCAGTGCTCGGAGTTTACGGTGCGGCATGCCTGCGGCGACGAGA
CGGCGCTGTTCACGCGCAAATTCCTCGACAAGATGTCCAACACGTTGATGCGGATGCACT
GCGTCGATTACACGCCGGAAAGTGGCAAATGCCGGGATTACTTCAGCTCAAGCGCCACCC
CGACGGGTCTAA

consensusID : consensus_2141#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 130
fasta sequence

                              [TCATCACAGACAGCAGCAGCAGCAGCAGCACGAACATTTGGGCGAAAGCATCAAACAGCACAAATCGGTGGAGGATGCGGAGGAGGAACGGCTTAAAACGGTTTGCTTGTGCCTTCCAGAAGTACATGCA]

[+] EMBL AL696171             [TCATCACAGACAGCAGCAGCAGCAGCAGCACGAACATTTGGGCGAAAGCATCAAACAGCACAAATCGGTGGAGGATGCGGAGGAGGAACGGCTTAAAACGGTTTGCTTGTGCCTTCCAGAAGTACATGCA]




>consensus_2141#1
TCATCACAGACAGCAGCAGCAGCAGCAGCACGAACATTTGGGCGAAAGCATCAAACAGCA
CAAATCGGTGGAGGATGCGGAGGAGGAACGGCTTAAAACGGTTTGCTTGTGCCTTCCAGA
AGTACATGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2141#0      CCGAACGAGACCACTTCAACAAACTCTACCACGGCACTAATGAAGTGATACACGAGCTCT 60
consensus_2141#1      ------------------------------------------------------------
                                                                                  

consensus_2141#0      GCGAGGAAGGCCCATATCAGGAAGACTTTCTTAGACATGCACCGTGCATGCGGCATGTGA 120
consensus_2141#1      ------------------------------------------------------------
                                                                                  

consensus_2141#0      AAAAAGACTACGAGGTGTGTGCGATCCACTACCAGAGCACCATGGCGAAGATAGGCCAGT 180
consensus_2141#1      ------------------------------------------------------------
                                                                                  

consensus_2141#0      CGGTGGCAACGACAACCACCACGACGGTAGCGTCGTCCATCTACCCAACAATGGCCACAC 240
consensus_2141#1      ------------------------------------------------------------
                                                                                  

consensus_2141#0      ATCCGGCGGCCGTCATGAGCAATGGTGGTGGGCAGTACCACAGCGGTGACATGAGTCAGC 300
consensus_2141#1      ------------------------------------------------------------
                                                                                  

consensus_2141#0      ATCAGCATCACCATCACAGACAGCAGCAGCAGCAGCACGAACATTTGGGCCGAAGCCATC 360
consensus_2141#1      -------TCATCACAGACAGCAGCAGCAGCAGCAGCACGAACATTTGGGCGAAAGC--AT 51
                             *** **       ******************************  ****    

consensus_2141#0      CAAACAGCACCAAGTCGGTGGAGGATGCGGAGGAAGAACGGCTTAAAACGGTTTGCT-GT 419
consensus_2141#1      CAAACAGCAC-AAATCGGTGGAGGATGCGGAGGAGGAACGGCTTAAAACGGTTTGCTTGT 110
                      ********** ** ******************** ********************** **

consensus_2141#0      GCCTTCCAGAAGTACATGCAGTGCTCGGAGTTTACGGTGCGGCATGCCTGCGGCGACGAG 479
consensus_2141#1      GCCTTCCAGAAGTACATGCA---------------------------------------- 130
                      ********************                                        

consensus_2141#0      ACGGCGCTGTTCACGCGCAAATTCCTCGACAAGATGTCCAACACGTTGATGCGGATGCAC 539
consensus_2141#1      ------------------------------------------------------------
                                                                                  

consensus_2141#0      TGCGTCGATTACACGCCGGAAAGTGGCAAATGCCGGGATTACTTCAGCTCAAGCGCCACC 599
consensus_2141#1      ------------------------------------------------------------
                                                                                  

consensus_2141#0      CCGACGGGTCTAA 612
consensus_2141#1      -------------