These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2150#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 819 fasta sequence [ATCGCCGCGGTTAATTGAGTATTTACAAAAAATCNGTAAAACAAAAAAATAGAAAACTTTTCAAGAAAATGCGAGACAAGTAGTAGTAGTTCTCATCTAGGGCCAGTAGTGGCAATCGAGTAGCGGCAAAATTTCTGGGAATACATATTGCGACGAACACTAGTTAAATACGGACAAGGTACAGTTTGAACGGCAGCACTATCTACCATTGCAGCGTACTCCAACGTGTACATTTCTGATGAGGTCACACGTGCTGACAAAACTATCCGGTCCCCACGGNGTCACGAATCCTTTGGCTTGGATTCCTGGGACACCCGCAGACACACACTTGAAANTATTATCCTATCCCACTGCAACGCTCACGCTATGAGCTATCCCTATGGTATCCATCACACCACGGGGACAAAACGAACATGACANATACCATCCCCTGGGGGGGACACAACACCACGACAACCGGCCGGGGCCCAAAACAAAAAATAGCGAGGCGCACCCCGNGAATGNCGGCGACGTAAAGTCAAANGCAACACAATAGGGAAACACACTCNGNCGGCCCTAGGACAACACCANCGGCCGAGGGGAACAGCACCAACGCAACAANCGGACAAGCNGAAACGCNGGGGACAGCACCCACCGGACCCGAACAACATAGGGGTTCGGGCAAAACAGACGGGCNNNTTGGTTGGACCCGACGGTANACANGGGCCANAACAGCGGGAATAGCCACCAAACCNTCAGGNCNGTGGACAGACCATCCAGACACCACACCAGCACGACAGAACAACGAGGCNAAACCCCACNGNGGCGTCCAANNGAGCN] [+] EMBL AL696232 [ATCGCCGCGGTTAATTGAGTATTTACAAAAAATCNGTAAAACAAAAAAATAGAAAACTTTTCAAGAAAATGCGAGACAAGTAGTAGTAGTTCTCATCTAGGGCCAGTAGTGGCAATCGAGTAGCGGCAAAATTTCTGGGAATACATATTGCGACGAACACTAGTTAAATACGGACAAGGTACAGTTTGAACGGCAGCACTATCTACCATTGCAGCGTACTCCAACGTGTACATTTCTGATGAGGTCACACGTGCTGACAAAACTATCCGGTCCCCACGGNGTCACGAATCCTTTGGCTTGGATTCCTGGGACACCCGCAGACACACACTTGAAANTATTATCCTATCCCACTGCAACGCTCACGCTATGAGCTATCCCTATGGTATCCATCACACCACGGGGACAAAACGAACATGACANATACCATCCCCTGGGGGGGACACAACACCACGACAACCGGCCGGGGCCCAAAACAAAAAATAGCGAGGCGCACCCCGNGAATGNCGGCGACGTAAAGTCAAANGCAACACAATAGGGAAACACACTCNGNCGGCCCTAGGACAACACCANCGGCCGAGGGGAACAGCACCAACGCAACAANCGGACAAGCNGAAACGCNGGGGACAGCACCCACCGGACCCGAACAACATAGGGGTTCGGGCAAAACAGACGGGCNNNTTGGTTGGACCCGACGGTANACANGGGCCANAACAGCGGGAATAGCCACCAAACCNTCAGGNCNGTGGACAGACCATCCAGACACCACACCAGCACGACAGAACAACGAGGCNAAACCCCACNGNGGCGTCCAANNGAGCN] consensusID : consensus_2150#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence [CCGGAAGGAAGGAAAATTATAAGTCAGTCTAAATTATTGAGTATTTAAAAAAAATAGTAAAACCAAAAAAAAAGAAAACTTTTCAAGAAAATGCGAGAAATAGTAGTGTTTCATCTGGGCCAGTGTGGCAATCGAGTAGCGGAAAATTTCTGGGAATACATTTGCGACGAACACTGTTTAAATACGGAAGGTCAGTTTGAAGGGCAGCACTATCTACCATTGCAGCGTATCAACGTGTATTTTGATGAGTCACCGTGCTGCAACTTCGTCCCACGGTCGATCTTTGCTGATCTGGAACCGAGCACATTGAATTATCTTCGCTGCAGTCGCTATGGTTCCTTGTTCTCCCCGGAAAGCTTCATCTCTGGGAAAACGAGCGCGGGCAACAATTGGGCCCGTGGTTATCACACTGAAGGGGCTGAACTGCTGGACCAGATTGAGGACTGCACCCGCCGAATGGTGGAAGGGTGTGACTGTCTGCAAGGTTTCCAACTGGTGCACTCGATCGGTGGCGGTACCGGCTCTGGACTGGGAACGCTACTGCTGGAAAACTTGAAGGATCACTTTCCGGGGAAGATCACGAACACGTTCAGCGTTATTCCTTCGCCGAAAGTATCGGAGGTCGTGGTGGAACCGTACAATGCTGTATTTGCACTCAGCTCTATGATACGT] [+] EMBL BM636336 [CCGGAAGGAAGGAAAATTATAAGTCAGTCTAAATTATTGAGTATTTAAAAAAAATAGTAAAACCAAAAAAAAAGAAAACTTTTCAAGAAAATGCGAGAAATAGTAGTGTTTCATCTGGGCCAGTGTGGCAATCGAGTAGCGGAAAATTTCTGGGAATACATTTGCGACGAACACTGTTTAAATACGGAAGGTCAGTTTGAAGGGCAGCACTATCTACCATTGCAGCGTATCAACGTGTATTTTGATGAGTCACCGTGCTGCAACTTCGTCCCACGGTCGATCTTTGCTGATCTGGAACCGAGCACATTGAATTATCTTCGCTGCAGTCGCTATGGTTCCTTGTTCTCCCCGGAAAGCTTCATCTCTGGGAAAACGAGCGCGGGCAACAATTGGGCCCGTGGTTATCACACTGAAGGGGCTGAACTGCTGGACCAGATTGAGGACTGCACCCGCCGAATGGTGGAAGGGTGTGACTGTCTGCAAGGTTTCCAACTGGTGCACTCGATCGGTGGCGGTACCGGCTCTGGACTGGGAACGCTACTGCTGGAAAACTTGAAGGATCACTTTCCGGGGAAGATCACGAACACGTTCAGCGTTATTCCTTCGCCGAAAGTATCGGAGGTCGTGGTGGAACCGTACAATGCTGTATTTGCACTCAGCTCTATGATACGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2150#0 ----------------------ATCGCCGCGGTTAATTGAGTATTTACAAAAAATCNGTA 38 consensus_2150#1 CCGGAAGGAAGGAAAATTATAAGTCAGTCTAAATTATTGAGTATTTAAAAAAAATAGTAA 60 ** * ************ ******* * consensus_2150#0 AAACAAAAAAATAGAAAACTTTTCAAGAAAATGCGAGACAAGTAGTAGTAGTTCTCATCT 98 consensus_2150#1 AACCAAAAAAAAAGAAAACTTTTCAAGAAAATGCGAGA--AATAGTAGTG--TTTCATCT 116 ** ******** ************************** * ******* * ****** consensus_2150#0 AGGGCCAGTAGTGGCAATCGAGTAGCGGCAAAATTTCTGGGAATACATATTGCGACGAAC 158 consensus_2150#1 -GGGCCAGT-GTGGCAATCGAGTAGCGG-AAAATTTCTGGGAATACAT-TTGCGACGAAC 172 ******** ****************** ******************* *********** consensus_2150#0 ACTAGTTAAATACGGACAAGGTACAGTTTGAACGGCAGCACTATCTACCATTGCAGCGTA 218 consensus_2150#1 ACTGTTTAAATACGGA--AGGT-CAGTTTGAAGGGCAGCACTATCTACCATTGCAGCGTA 229 *** *********** **** ********* *************************** consensus_2150#0 CTCCAACGTGTACATTTCTGATGAGGTCACACGTGCTGACAAAACTATCCGGTCCCCACG 278 consensus_2150#1 T--CAACGTGTA---TTTTGATGAG-TCAC-CGTGCTG-CAACTTCGTC------CCACG 275 ********* ** ******* **** ******* *** ** ***** consensus_2150#0 GNGTCACGAATCCTTTGGCTTGGATTCCTGGGACACCCGCAGACACACACTTGAAANTAT 338 consensus_2150#1 GTC-----GATCTTT--GCT--GAT--CTGGAAC-----CGAGCACA---TTGAA----T 312 * *** ** *** *** **** ** * **** ***** * consensus_2150#0 TATCCTATCCCACTGCAA-CGCTCACGCTATGAGCTATCCCTATGGTATCCATCACACCA 397 consensus_2150#1 TATCTT----CGCTGCAGTCGCTATGGTTCCTTGTTCTCCCC--GGAAAGCTTCATCTCT 366 **** * * ***** **** * * * * **** ** * * *** * consensus_2150#0 CGGGGACAAAACGAACATGACANATACCATCCCCTGGGGGGGACACAACACCACGACAAC 457 consensus_2150#1 GGG----AAAACGAGCGCGGGCAACAATTGGGCCCGTGGTTATCACACTG-------AAG 415 ** ******* * * * * ** * ** **** ** consensus_2150#0 CGGCCGGGGCCCAAAACAAAAAATAGCGAGGCGCACCCCGNGAATGNCGGCGACGTAAAG 517 consensus_2150#1 GGGCTGAACTGCTGGACCAGA--TTGAGGACTGCACCCGCCGAATGGTGGAAGGGTGTGA 473 *** * * ** * * * * * ****** ***** ** ** consensus_2150#0 TCAAANGCAACACAATAGGGAAACACACTCNGNCGGCCCTAGGACAACACCANCGGCCGA 577 consensus_2150#1 CTGTCTGCAAGGTTTCCAACTGGTGCACTCGATCGGT-----GGCGGTACCGGCTCTGGA 528 **** ***** *** * * *** * ** consensus_2150#0 G-GGGAACAGCACCAACGCAACAANCGGACAAGCNGAAACGCNGGGGACAGCACCCACCG 636 consensus_2150#1 CTGGGAACGCTACTGCTGGAA-AACTTGAAGGATCACTTTCCGGGGAAGATCAC-----G 582 ****** ** * ** ** ** * *** * * *** * consensus_2150#0 GACCCGAACAACATAGGGGTTCGGGCAAAACAGACGGGCNNNTTGGTTGGACCCGACGGT 696 consensus_2150#1 AACACGTTCAGCGTTATTCCTTCGCCGAAAGTATCGGAGGTCGTGGTGGAACCGTACAAT 642 ** ** ** * * * * * *** *** **** * *** ** * consensus_2150#0 AN-ACANGGGCCANAACAGCGGGAATAGCCACCAAACCNTCAGGNCNGTGGACAGACCAT 755 consensus_2150#1 GCTGTATTTGCACTCAGCTCTATGATACGT------------------------------ 672 * ** * * *** consensus_2150#0 CCAGACACCACACCAGCACGACAGAACAACGAGGCNAAACCCCACNGNGGCGTCCAANNG 815 consensus_2150#1 ------------------------------------------------------------ consensus_2150#0 AGCN 819 consensus_2150#1 ---- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||