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Anopheles gambiae
cluster # 2150 cluster # 2150       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2150#0 length = 819 sequences # 1  
consensus_2150#1 length = 672 sequences # 1  

consensusID : consensus_2150#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 819
fasta sequence
                              [ATCGCCGCGGTTAATTGAGTATTTACAAAAAATCNGTAAAACAAAAAAATAGAAAACTTTTCAAGAAAATGCGAGACAAGTAGTAGTAGTTCTCATCTAGGGCCAGTAGTGGCAATCGAGTAGCGGCAAAATTTCTGGGAATACATATTGCGACGAACACTAGTTAAATACGGACAAGGTACAGTTTGAACGGCAGCACTATCTACCATTGCAGCGTACTCCAACGTGTACATTTCTGATGAGGTCACACGTGCTGACAAAACTATCCGGTCCCCACGGNGTCACGAATCCTTTGGCTTGGATTCCTGGGACACCCGCAGACACACACTTGAAANTATTATCCTATCCCACTGCAACGCTCACGCTATGAGCTATCCCTATGGTATCCATCACACCACGGGGACAAAACGAACATGACANATACCATCCCCTGGGGGGGACACAACACCACGACAACCGGCCGGGGCCCAAAACAAAAAATAGCGAGGCGCACCCCGNGAATGNCGGCGACGTAAAGTCAAANGCAACACAATAGGGAAACACACTCNGNCGGCCCTAGGACAACACCANCGGCCGAGGGGAACAGCACCAACGCAACAANCGGACAAGCNGAAACGCNGGGGACAGCACCCACCGGACCCGAACAACATAGGGGTTCGGGCAAAACAGACGGGCNNNTTGGTTGGACCCGACGGTANACANGGGCCANAACAGCGGGAATAGCCACCAAACCNTCAGGNCNGTGGACAGACCATCCAGACACCACACCAGCACGACAGAACAACGAGGCNAAACCCCACNGNGGCGTCCAANNGAGCN]

[+] EMBL AL696232             [ATCGCCGCGGTTAATTGAGTATTTACAAAAAATCNGTAAAACAAAAAAATAGAAAACTTTTCAAGAAAATGCGAGACAAGTAGTAGTAGTTCTCATCTAGGGCCAGTAGTGGCAATCGAGTAGCGGCAAAATTTCTGGGAATACATATTGCGACGAACACTAGTTAAATACGGACAAGGTACAGTTTGAACGGCAGCACTATCTACCATTGCAGCGTACTCCAACGTGTACATTTCTGATGAGGTCACACGTGCTGACAAAACTATCCGGTCCCCACGGNGTCACGAATCCTTTGGCTTGGATTCCTGGGACACCCGCAGACACACACTTGAAANTATTATCCTATCCCACTGCAACGCTCACGCTATGAGCTATCCCTATGGTATCCATCACACCACGGGGACAAAACGAACATGACANATACCATCCCCTGGGGGGGACACAACACCACGACAACCGGCCGGGGCCCAAAACAAAAAATAGCGAGGCGCACCCCGNGAATGNCGGCGACGTAAAGTCAAANGCAACACAATAGGGAAACACACTCNGNCGGCCCTAGGACAACACCANCGGCCGAGGGGAACAGCACCAACGCAACAANCGGACAAGCNGAAACGCNGGGGACAGCACCCACCGGACCCGAACAACATAGGGGTTCGGGCAAAACAGACGGGCNNNTTGGTTGGACCCGACGGTANACANGGGCCANAACAGCGGGAATAGCCACCAAACCNTCAGGNCNGTGGACAGACCATCCAGACACCACACCAGCACGACAGAACAACGAGGCNAAACCCCACNGNGGCGTCCAANNGAGCN]


>consensus_2150#0 ATCGCCGCGGTTAATTGAGTATTTACAAAAAATCNGTAAAACAAAAAAATAGAAAACTTT TCAAGAAAATGCGAGACAAGTAGTAGTAGTTCTCATCTAGGGCCAGTAGTGGCAATCGAG TAGCGGCAAAATTTCTGGGAATACATATTGCGACGAACACTAGTTAAATACGGACAAGGT ACAGTTTGAACGGCAGCACTATCTACCATTGCAGCGTACTCCAACGTGTACATTTCTGAT GAGGTCACACGTGCTGACAAAACTATCCGGTCCCCACGGNGTCACGAATCCTTTGGCTTG GATTCCTGGGACACCCGCAGACACACACTTGAAANTATTATCCTATCCCACTGCAACGCT CACGCTATGAGCTATCCCTATGGTATCCATCACACCACGGGGACAAAACGAACATGACAN ATACCATCCCCTGGGGGGGACACAACACCACGACAACCGGCCGGGGCCCAAAACAAAAAA TAGCGAGGCGCACCCCGNGAATGNCGGCGACGTAAAGTCAAANGCAACACAATAGGGAAA CACACTCNGNCGGCCCTAGGACAACACCANCGGCCGAGGGGAACAGCACCAACGCAACAA NCGGACAAGCNGAAACGCNGGGGACAGCACCCACCGGACCCGAACAACATAGGGGTTCGG GCAAAACAGACGGGCNNNTTGGTTGGACCCGACGGTANACANGGGCCANAACAGCGGGAA TAGCCACCAAACCNTCAGGNCNGTGGACAGACCATCCAGACACCACACCAGCACGACAGA ACAACGAGGCNAAACCCCACNGNGGCGTCCAANNGAGCN



consensusID : consensus_2150#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 672
fasta sequence
                              [CCGGAAGGAAGGAAAATTATAAGTCAGTCTAAATTATTGAGTATTTAAAAAAAATAGTAAAACCAAAAAAAAAGAAAACTTTTCAAGAAAATGCGAGAAATAGTAGTGTTTCATCTGGGCCAGTGTGGCAATCGAGTAGCGGAAAATTTCTGGGAATACATTTGCGACGAACACTGTTTAAATACGGAAGGTCAGTTTGAAGGGCAGCACTATCTACCATTGCAGCGTATCAACGTGTATTTTGATGAGTCACCGTGCTGCAACTTCGTCCCACGGTCGATCTTTGCTGATCTGGAACCGAGCACATTGAATTATCTTCGCTGCAGTCGCTATGGTTCCTTGTTCTCCCCGGAAAGCTTCATCTCTGGGAAAACGAGCGCGGGCAACAATTGGGCCCGTGGTTATCACACTGAAGGGGCTGAACTGCTGGACCAGATTGAGGACTGCACCCGCCGAATGGTGGAAGGGTGTGACTGTCTGCAAGGTTTCCAACTGGTGCACTCGATCGGTGGCGGTACCGGCTCTGGACTGGGAACGCTACTGCTGGAAAACTTGAAGGATCACTTTCCGGGGAAGATCACGAACACGTTCAGCGTTATTCCTTCGCCGAAAGTATCGGAGGTCGTGGTGGAACCGTACAATGCTGTATTTGCACTCAGCTCTATGATACGT]

[+] EMBL BM636336             [CCGGAAGGAAGGAAAATTATAAGTCAGTCTAAATTATTGAGTATTTAAAAAAAATAGTAAAACCAAAAAAAAAGAAAACTTTTCAAGAAAATGCGAGAAATAGTAGTGTTTCATCTGGGCCAGTGTGGCAATCGAGTAGCGGAAAATTTCTGGGAATACATTTGCGACGAACACTGTTTAAATACGGAAGGTCAGTTTGAAGGGCAGCACTATCTACCATTGCAGCGTATCAACGTGTATTTTGATGAGTCACCGTGCTGCAACTTCGTCCCACGGTCGATCTTTGCTGATCTGGAACCGAGCACATTGAATTATCTTCGCTGCAGTCGCTATGGTTCCTTGTTCTCCCCGGAAAGCTTCATCTCTGGGAAAACGAGCGCGGGCAACAATTGGGCCCGTGGTTATCACACTGAAGGGGCTGAACTGCTGGACCAGATTGAGGACTGCACCCGCCGAATGGTGGAAGGGTGTGACTGTCTGCAAGGTTTCCAACTGGTGCACTCGATCGGTGGCGGTACCGGCTCTGGACTGGGAACGCTACTGCTGGAAAACTTGAAGGATCACTTTCCGGGGAAGATCACGAACACGTTCAGCGTTATTCCTTCGCCGAAAGTATCGGAGGTCGTGGTGGAACCGTACAATGCTGTATTTGCACTCAGCTCTATGATACGT]


>consensus_2150#1 CCGGAAGGAAGGAAAATTATAAGTCAGTCTAAATTATTGAGTATTTAAAAAAAATAGTAA AACCAAAAAAAAAGAAAACTTTTCAAGAAAATGCGAGAAATAGTAGTGTTTCATCTGGGC CAGTGTGGCAATCGAGTAGCGGAAAATTTCTGGGAATACATTTGCGACGAACACTGTTTA AATACGGAAGGTCAGTTTGAAGGGCAGCACTATCTACCATTGCAGCGTATCAACGTGTAT TTTGATGAGTCACCGTGCTGCAACTTCGTCCCACGGTCGATCTTTGCTGATCTGGAACCG AGCACATTGAATTATCTTCGCTGCAGTCGCTATGGTTCCTTGTTCTCCCCGGAAAGCTTC ATCTCTGGGAAAACGAGCGCGGGCAACAATTGGGCCCGTGGTTATCACACTGAAGGGGCT GAACTGCTGGACCAGATTGAGGACTGCACCCGCCGAATGGTGGAAGGGTGTGACTGTCTG CAAGGTTTCCAACTGGTGCACTCGATCGGTGGCGGTACCGGCTCTGGACTGGGAACGCTA CTGCTGGAAAACTTGAAGGATCACTTTCCGGGGAAGATCACGAACACGTTCAGCGTTATT CCTTCGCCGAAAGTATCGGAGGTCGTGGTGGAACCGTACAATGCTGTATTTGCACTCAGC TCTATGATACGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2150#0      ----------------------ATCGCCGCGGTTAATTGAGTATTTACAAAAAATCNGTA 38
consensus_2150#1      CCGGAAGGAAGGAAAATTATAAGTCAGTCTAAATTATTGAGTATTTAAAAAAAATAGTAA 60
                                             **        * ************ *******    *

consensus_2150#0      AAACAAAAAAATAGAAAACTTTTCAAGAAAATGCGAGACAAGTAGTAGTAGTTCTCATCT 98
consensus_2150#1      AACCAAAAAAAAAGAAAACTTTTCAAGAAAATGCGAGA--AATAGTAGTG--TTTCATCT 116
                      ** ******** **************************  * *******   * ******

consensus_2150#0      AGGGCCAGTAGTGGCAATCGAGTAGCGGCAAAATTTCTGGGAATACATATTGCGACGAAC 158
consensus_2150#1      -GGGCCAGT-GTGGCAATCGAGTAGCGG-AAAATTTCTGGGAATACAT-TTGCGACGAAC 172
                       ******** ****************** ******************* ***********

consensus_2150#0      ACTAGTTAAATACGGACAAGGTACAGTTTGAACGGCAGCACTATCTACCATTGCAGCGTA 218
consensus_2150#1      ACTGTTTAAATACGGA--AGGT-CAGTTTGAAGGGCAGCACTATCTACCATTGCAGCGTA 229
                      ***  ***********  **** ********* ***************************

consensus_2150#0      CTCCAACGTGTACATTTCTGATGAGGTCACACGTGCTGACAAAACTATCCGGTCCCCACG 278
consensus_2150#1      T--CAACGTGTA---TTTTGATGAG-TCAC-CGTGCTG-CAACTTCGTC------CCACG 275
                         *********   ** ******* **** ******* ***     **      *****

consensus_2150#0      GNGTCACGAATCCTTTGGCTTGGATTCCTGGGACACCCGCAGACACACACTTGAAANTAT 338
consensus_2150#1      GTC-----GATCTTT--GCT--GAT--CTGGAAC-----CGAGCACA---TTGAA----T 312
                      *        *** **  ***  ***  **** **     *   ****   *****    *

consensus_2150#0      TATCCTATCCCACTGCAA-CGCTCACGCTATGAGCTATCCCTATGGTATCCATCACACCA 397
consensus_2150#1      TATCTT----CGCTGCAGTCGCTATGGTTCCTTGTTCTCCCC--GGAAAGCTTCATCTCT 366
                      **** *    * *****  ****   * *    * * ****   ** *  * ***   * 

consensus_2150#0      CGGGGACAAAACGAACATGACANATACCATCCCCTGGGGGGGACACAACACCACGACAAC 457
consensus_2150#1      GGG----AAAACGAGCGCGGGCAACAATTGGGCCCGTGGTTATCACACTG-------AAG 415
                       **    ******* *  *    * *      ** * **    ****          ** 

consensus_2150#0      CGGCCGGGGCCCAAAACAAAAAATAGCGAGGCGCACCCCGNGAATGNCGGCGACGTAAAG 517
consensus_2150#1      GGGCTGAACTGCTGGACCAGA--TTGAGGACTGCACCCGCCGAATGGTGGAAGGGTGTGA 473
                       *** *     *   ** * *  * * *    ******   *****  **    **    

consensus_2150#0      TCAAANGCAACACAATAGGGAAACACACTCNGNCGGCCCTAGGACAACACCANCGGCCGA 577
consensus_2150#1      CTGTCTGCAAGGTTTCCAACTGGTGCACTCGATCGGT-----GGCGGTACCGGCTCTGGA 528
                            ****               *****   ***      * *   ***  *    **

consensus_2150#0      G-GGGAACAGCACCAACGCAACAANCGGACAAGCNGAAACGCNGGGGACAGCACCCACCG 636
consensus_2150#1      CTGGGAACGCTACTGCTGGAA-AACTTGAAGGATCACTTTCCGGGGAAGATCAC-----G 582
                        ******   **    * ** **   **            * *** * * ***     *

consensus_2150#0      GACCCGAACAACATAGGGGTTCGGGCAAAACAGACGGGCNNNTTGGTTGGACCCGACGGT 696
consensus_2150#1      AACACGTTCAGCGTTATTCCTTCGCCGAAAGTATCGGAGGTCGTGGTGGAACCGTACAAT 642
                       ** **  ** * *      *  * * ***    ***      **** * ***  **  *

consensus_2150#0      AN-ACANGGGCCANAACAGCGGGAATAGCCACCAAACCNTCAGGNCNGTGGACAGACCAT 755
consensus_2150#1      GCTGTATTTGCACTCAGCTCTATGATACGT------------------------------ 672
                           *   **    *   *    ***                                 

consensus_2150#0      CCAGACACCACACCAGCACGACAGAACAACGAGGCNAAACCCCACNGNGGCGTCCAANNG 815
consensus_2150#1      ------------------------------------------------------------
                                                                                  

consensus_2150#0      AGCN 819
consensus_2150#1      ----
                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)