cluster # 2163

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Anopheles gambiae
cluster # 2163 cluster # 2163 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2163#0 length = 731 sequences # 1

consensus_2163#1 length = 724 sequences # 1

consensusID : consensus_2163#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 731
fasta sequence

                              [ATCGCCAGAGGTTAATGCGAAGTTGCAACAGTCGCCGCTATAGAGTATCCGACTGTGTAAAAGGGAAGAGCGGAGCTATTCTTATTAATAGTGCTTACGCAACATTGACTTCTTAGTGACGTTTTTCATCGTTTGGAGAAAGCGGCCGCGTCAGTAATGCTACTAATTGAATTGAACGTGGAAGAGAGTAAGGTACCAAAGAAAAATTGTTGGAAAGGAGGTGCATGCCGAAATAATTTTTCTTTATGCCAAATTCGGACAAGTATGTACAATGGGCCTCCATGGTGCAAAAAAATTTTTGCACCATGAGATGTATTCGCTCGCAGACGGCTGCTTGTGCGAAATGCTCTGAAAGTGGGATCGTTAATAGAACTGTGTAAAAGTCTCAATATGTCGCCCATTTCTGTCGTTACGACTAGAATCGTCCTTCAATTCAACTGCCGATTCGCTGAACGCCCATCCAACCGGAATAGTCTGCCAAACTTATAGTAATGGGTGTCTATTCGAAATTTCATTGGAACCAATAAGGAGACGTTGAAACACCCCAACAGCTGCGTTTGGATTTATATGTTTCGATGACCGGTTGCTTCACTGATCTGTTACTACTTGTTTCCAGCGGCTGTTTCCATCCAGAAACATCGGGCTCAGAATTGAGTCTAACCTTTGTCGGGAGACGTATATCAATACTGTTCTGGCTTTCTGCAGAATCAATGACAATCGTTAATACGGTC]

[+] EMBL AL696356             [ATCGCCAGAGGTTAATGCGAAGTTGCAACAGTCGCCGCTATAGAGTATCCGACTGTGTAAAAGGGAAGAGCGGAGCTATTCTTATTAATAGTGCTTACGCAACATTGACTTCTTAGTGACGTTTTTCATCGTTTGGAGAAAGCGGCCGCGTCAGTAATGCTACTAATTGAATTGAACGTGGAAGAGAGTAAGGTACCAAAGAAAAATTGTTGGAAAGGAGGTGCATGCCGAAATAATTTTTCTTTATGCCAAATTCGGACAAGTATGTACAATGGGCCTCCATGGTGCAAAAAAATTTTTGCACCATGAGATGTATTCGCTCGCAGACGGCTGCTTGTGCGAAATGCTCTGAAAGTGGGATCGTTAATAGAACTGTGTAAAAGTCTCAATATGTCGCCCATTTCTGTCGTTACGACTAGAATCGTCCTTCAATTCAACTGCCGATTCGCTGAACGCCCATCCAACCGGAATAGTCTGCCAAACTTATAGTAATGGGTGTCTATTCGAAATTTCATTGGAACCAATAAGGAGACGTTGAAACACCCCAACAGCTGCGTTTGGATTTATATGTTTCGATGACCGGTTGCTTCACTGATCTGTTACTACTTGTTTCCAGCGGCTGTTTCCATCCAGAAACATCGGGCTCAGAATTGAGTCTAACCTTTGTCGGGAGACGTATATCAATACTGTTCTGGCTTTCTGCAGAATCAATGACAATCGTTAATACGGTC]




>consensus_2163#0
ATCGCCAGAGGTTAATGCGAAGTTGCAACAGTCGCCGCTATAGAGTATCCGACTGTGTAA
AAGGGAAGAGCGGAGCTATTCTTATTAATAGTGCTTACGCAACATTGACTTCTTAGTGAC
GTTTTTCATCGTTTGGAGAAAGCGGCCGCGTCAGTAATGCTACTAATTGAATTGAACGTG
GAAGAGAGTAAGGTACCAAAGAAAAATTGTTGGAAAGGAGGTGCATGCCGAAATAATTTT
TCTTTATGCCAAATTCGGACAAGTATGTACAATGGGCCTCCATGGTGCAAAAAAATTTTT
GCACCATGAGATGTATTCGCTCGCAGACGGCTGCTTGTGCGAAATGCTCTGAAAGTGGGA
TCGTTAATAGAACTGTGTAAAAGTCTCAATATGTCGCCCATTTCTGTCGTTACGACTAGA
ATCGTCCTTCAATTCAACTGCCGATTCGCTGAACGCCCATCCAACCGGAATAGTCTGCCA
AACTTATAGTAATGGGTGTCTATTCGAAATTTCATTGGAACCAATAAGGAGACGTTGAAA
CACCCCAACAGCTGCGTTTGGATTTATATGTTTCGATGACCGGTTGCTTCACTGATCTGT
TACTACTTGTTTCCAGCGGCTGTTTCCATCCAGAAACATCGGGCTCAGAATTGAGTCTAA
CCTTTGTCGGGAGACGTATATCAATACTGTTCTGGCTTTCTGCAGAATCAATGACAATCG
TTAATACGGTC

consensusID : consensus_2163#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 724
fasta sequence

                              [AGAATCGCCAGCCAGGTTTANTGCGAAGTTGAACAGTCGCCGCTATAGAGTATCGACTGTGTAAAAGGGAAGAGCGGAGCTATTCTTATTAATAGTGCTTACGCAACATTGACTTCTTAGTGACGTTTTTCATCGTTTGGAGAAAGCGGCCGCGTCAGTAATGCTACTAATTGAATTGAACGTGGAACGAGAGTAAGGTACCAAATGAAAAATTGTTTGGACAAGGAGGTGCATGCCCGTANNTAAGTATAATCTGTATGCCCAAGATTCGGACNANGTATGTACAAGGGCCTCCCATGGTGCGAAACAAAACTTGTAGCACGCATNCGCAATGATTGGTCATTCGCATTCGCCATGACGGATGGCTTGATGCGNACATTGCCTCTTGACGGTGGGATGCTGGTCTCAATAGAACTGTGTAAGAGCAGATTCTTCACATTATTGNTACCGTGCCGAATNTCACTTGGCTCCGATATAACTGAGCTANCAAATTCCGGCTCGCTTTCCAAATTCCNCATNNTTGGACCCGGAATTCTCTGTCCTAGGNAACAGGCCTCGATCCCCATCTCCCGCGTANATAAGTTCNGGTCCAAGCACCCTTGTGAATATGATGANACTTAGGGCGTTCGGTCTTNATTTACCGGTAAAGATTGTGTGATTGTGGGGAAACCGAAAATTATATGTGGAATGTAGCGAGNTNTCGGCAAAAATTCACCAAGCNCCA]

[+] EMBL AL696330             [AGAATCGCCAGCCAGGTTTANTGCGAAGTTGAACAGTCGCCGCTATAGAGTATCGACTGTGTAAAAGGGAAGAGCGGAGCTATTCTTATTAATAGTGCTTACGCAACATTGACTTCTTAGTGACGTTTTTCATCGTTTGGAGAAAGCGGCCGCGTCAGTAATGCTACTAATTGAATTGAACGTGGAACGAGAGTAAGGTACCAAATGAAAAATTGTTTGGACAAGGAGGTGCATGCCCGTANNTAAGTATAATCTGTATGCCCAAGATTCGGACNANGTATGTACAAGGGCCTCCCATGGTGCGAAACAAAACTTGTAGCACGCATNCGCAATGATTGGTCATTCGCATTCGCCATGACGGATGGCTTGATGCGNACATTGCCTCTTGACGGTGGGATGCTGGTCTCAATAGAACTGTGTAAGAGCAGATTCTTCACATTATTGNTACCGTGCCGAATNTCACTTGGCTCCGATATAACTGAGCTANCAAATTCCGGCTCGCTTTCCAAATTCCNCATNNTTGGACCCGGAATTCTCTGTCCTAGGNAACAGGCCTCGATCCCCATCTCCCGCGTANATAAGTTCNGGTCCAAGCACCCTTGTGAATATGATGANACTTAGGGCGTTCGGTCTTNATTTACCGGTAAAGATTGTGTGATTGTGGGGAAACCGAAAATTATATGTGGAATGTAGCGAGNTNTCGGCAAAAATTCACCAAGCNCCA]




>consensus_2163#1
AGAATCGCCAGCCAGGTTTANTGCGAAGTTGAACAGTCGCCGCTATAGAGTATCGACTGT
GTAAAAGGGAAGAGCGGAGCTATTCTTATTAATAGTGCTTACGCAACATTGACTTCTTAG
TGACGTTTTTCATCGTTTGGAGAAAGCGGCCGCGTCAGTAATGCTACTAATTGAATTGAA
CGTGGAACGAGAGTAAGGTACCAAATGAAAAATTGTTTGGACAAGGAGGTGCATGCCCGT
ANNTAAGTATAATCTGTATGCCCAAGATTCGGACNANGTATGTACAAGGGCCTCCCATGG
TGCGAAACAAAACTTGTAGCACGCATNCGCAATGATTGGTCATTCGCATTCGCCATGACG
GATGGCTTGATGCGNACATTGCCTCTTGACGGTGGGATGCTGGTCTCAATAGAACTGTGT
AAGAGCAGATTCTTCACATTATTGNTACCGTGCCGAATNTCACTTGGCTCCGATATAACT
GAGCTANCAAATTCCGGCTCGCTTTCCAAATTCCNCATNNTTGGACCCGGAATTCTCTGT
CCTAGGNAACAGGCCTCGATCCCCATCTCCCGCGTANATAAGTTCNGGTCCAAGCACCCT
TGTGAATATGATGANACTTAGGGCGTTCGGTCTTNATTTACCGGTAAAGATTGTGTGATT
GTGGGGAAACCGAAAATTATATGTGGAATGTAGCGAGNTNTCGGCAAAAATTCACCAAGC
NCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2163#0      ---ATCGCCAG---AGGTTAATGCGAAGTTGCAACAGTCGCCGCTATAGAGTATCCGACT 54
consensus_2163#1      AGAATCGCCAGCCAGGTTTANTGCGAAGTTG-AACAGTCGCCGCTATAGAGTATC-GACT 58
                         ********    * *** ********** *********************** ****

consensus_2163#0      GTGTAAAAGGGAAGAGCGGAGCTATTCTTATTAATAGTGCTTACGCAACATTGACTTCTT 114
consensus_2163#1      GTGTAAAAGGGAAGAGCGGAGCTATTCTTATTAATAGTGCTTACGCAACATTGACTTCTT 118
                      ************************************************************

consensus_2163#0      AGTGACGTTTTTCATCGTTTGGAGAAAGCGGCCGCGTCAGTAATGCTACTAATTGAATTG 174
consensus_2163#1      AGTGACGTTTTTCATCGTTTGGAGAAAGCGGCCGCGTCAGTAATGCTACTAATTGAATTG 178
                      ************************************************************

consensus_2163#0      AACGTGGAA-GAGAGTAAGGTACCAAA-GAAAAATTGTTGGAA--AGGAGGTGCATGCCG 230
consensus_2163#1      AACGTGGAACGAGAGTAAGGTACCAAATGAAAAATTGTTTGGACAAGGAGGTGCATGCCC 238
                      ********* ***************** *********** * *  ************** 

consensus_2163#0      --AAATAATTTT--TCTTTATGCC--AAATTCGGACAAG-TATGTACAATGGGCCTCCAT 283
consensus_2163#1      GTANNTAAGTATAATCTGTATGCCCAAGATTCGGACNANGTATGTACAAGGGCCTCCCAT 298
                        *  *** * *  *** ******  * ******** *  ********* ** *  ****

consensus_2163#0      GGTGCAAAAAAATTTTTGCACCATGAGAT------------------GTATTCGC--TCG 323
consensus_2163#1      GGTGCGAAACAAAACTTGTAGCACGCATNCGCAATGATTGGTCATTCGCATTCGCCATGA 358
                      ***** *** **   *** * ** *                      * ******  *  

consensus_2163#0      CAGACGGCTGCTTGTGCGAAATGCTC--TGAAAGTGGGAT-----CGTTAATAGAACTGT 376
consensus_2163#1      CGGATGGCTTGATGCGNACATTGCCTCTTGACGGTGGGATGCTGGTCTCAATAGAACTGT 418
                      * ** ****   ** *   * ***    ***  *******       * ***********

consensus_2163#0      GTAAAAGTCTCAATATGTCGCCCATTTCTGTCGTTACGACTAGAATCGTCCTTCAATTCA 436
consensus_2163#1      GTAAGAGC----AGATTCTTCACATTATTGNTACCGTGCCGAATNTC--------ACTTG 466
                      **** **     * **    * ****  **       * * *   **        * *  

consensus_2163#0      ACTGCCGATTCGCTGAACGCCCATCCAACCGGAATAGTCTGCCAAACTTATAGTAATGGG 496
consensus_2163#1      GCTCCGATATAACTGAGCTANCA--AATTCCGGCTCGCTTTCCAAATTCCNCATNNTTGG 524
                       ** *    *  **** *   **   *  * *  * *  * ***** *     *  * **

consensus_2163#0      TGTCTATTCGAAATTTCATTGGAACCAATAAGGAGACGTTGAAACACCCCAACAGCTGCG 556
consensus_2163#1      -----ACCCGGAATTCTCT--GTCCTAGGNAACAGGCCTCGAT---CCCCATCTCCCGCG 574
                           *  ** ****   *  *  * *   *  ** * * **    ***** *  * ***

consensus_2163#0      TTTGGATTTATATGTTTCGATGACCGGTTGCTTCACTGATCTGTTACTACTTGTTTCCAG 616
consensus_2163#1      TAN------ATAAGTTCNGGTC-CAAGCACCCTTGTGAATATGATGANACTTAGGGCGTT 627
                      *        *** ***  * *  *  *   * *     ** ** *   ****    *   

consensus_2163#0      CGGCTGTT-TCCATCCAGAAACATCGGGCTCAGAATTGAGTCTAACCTTTGTCGGGAGAC 675
consensus_2163#1      CGGTCTTNATTTACCGGTAAAGATTGTGT----GATTGTGGGGAAAC-----CGAAAATT 678
                      ***   *  *  * *   *** ** * *      **** *   ** *     **  *   

consensus_2163#0      GTATATCAATACTGTTCTGGCTTTCTGCAGAATCAATGACAATCGTTAATACGGTC 731
consensus_2163#1      ATATGTGGA-ATGTAGCGAGNTNTCGGCAAAAATT-CACCAAGCNCCA-------- 724
                       *** *  * *     *  * * ** *** **       *** *   *