cluster # 2169

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Anopheles gambiae
cluster # 2169 cluster # 2169 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2169#0 length = 586 sequences # 1

consensus_2169#1 length = 161 sequences # 1

consensusID : consensus_2169#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence

                              [CCGCTGCGTGGGGGTCTAGTGCATGCCCATCACACCACCACCACCATCAATTTTTATCACTAGGAAGGAGCTTAGAAATGGAGATGGATACAACGGGACAGAGATTTATCGATATACATATATACAAGCCAACTGACACCTTCTATATCCCATGATGATGCTGCACGTATATCCATGCTGAGGGCATACATCTAAAGTACAGGAATCGCTATTCCCATGGTCTTGCTGAGATCTTGCTGAGTACAACTGAACAAGAAGTTGAATTTTCCGAATCGATCCGAACTCTCCTCGCTTCTGCCGAGAAAAAAGGGAGTTAGCAAAATTAGACACGAGAGACATAACATTGATCGAATCCAATGCACACCGATTGCGTCCACCGATGCATCATCACTTGCACCCGTTGCTACTATGTTCACGTGTGCTTCTGTGTAGTTCTCGCACTTGGTGCCGTAGTGTTGTGAAGCAAAGAGCGAGAGAACGGGGGAGAGAAAGCCATGCTACTACTAAATAGGCATAACATTTTGGAAACTACCCAAACACACCCACTCAACAACATATATTTACTCGCTACGCGTAGATAATGATA]

[+] EMBL BM576720             [CCGCTGCGTGGGGGTCTAGTGCATGCCCATCACACCACCACCACCATCAATTTTTATCACTAGGAAGGAGCTTAGAAATGGAGATGGATACAACGGGACAGAGATTTATCGATATACATATATACAAGCCAACTGACACCTTCTATATCCCATGATGATGCTGCACGTATATCCATGCTGAGGGCATACATCTAAAGTACAGGAATCGCTATTCCCATGGTCTTGCTGAGATCTTGCTGAGTACAACTGAACAAGAAGTTGAATTTTCCGAATCGATCCGAACTCTCCTCGCTTCTGCCGAGAAAAAAGGGAGTTAGCAAAATTAGACACGAGAGACATAACATTGATCGAATCCAATGCACACCGATTGCGTCCACCGATGCATCATCACTTGCACCCGTTGCTACTATGTTCACGTGTGCTTCTGTGTAGTTCTCGCACTTGGTGCCGTAGTGTTGTGAAGCAAAGAGCGAGAGAACGGGGGAGAGAAAGCCATGCTACTACTAAATAGGCATAACATTTTGGAAACTACCCAAACACACCCACTCAACAACATATATTTACTCGCTACGCGTAGATAATGATA]




>consensus_2169#0
CCGCTGCGTGGGGGTCTAGTGCATGCCCATCACACCACCACCACCATCAATTTTTATCAC
TAGGAAGGAGCTTAGAAATGGAGATGGATACAACGGGACAGAGATTTATCGATATACATA
TATACAAGCCAACTGACACCTTCTATATCCCATGATGATGCTGCACGTATATCCATGCTG
AGGGCATACATCTAAAGTACAGGAATCGCTATTCCCATGGTCTTGCTGAGATCTTGCTGA
GTACAACTGAACAAGAAGTTGAATTTTCCGAATCGATCCGAACTCTCCTCGCTTCTGCCG
AGAAAAAAGGGAGTTAGCAAAATTAGACACGAGAGACATAACATTGATCGAATCCAATGC
ACACCGATTGCGTCCACCGATGCATCATCACTTGCACCCGTTGCTACTATGTTCACGTGT
GCTTCTGTGTAGTTCTCGCACTTGGTGCCGTAGTGTTGTGAAGCAAAGAGCGAGAGAACG
GGGGAGAGAAAGCCATGCTACTACTAAATAGGCATAACATTTTGGAAACTACCCAAACAC
ACCCACTCAACAACATATATTTACTCGCTACGCGTAGATAATGATA

consensusID : consensus_2169#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 161
fasta sequence

                              [GAATCGCTATTCCCATGGTCCCGCCGAGATCTCGCTGAGTACAACTGAACAAGAAGTTGAATTCGCACCCACTGGGCCGAACCGATCACTCTCCTCGCTTCTGCCGAGAAAAAAGGGATTTAGCAAAATCAGACACGAGAGACATAACATCGATCGAATCC]

[+] EMBL BX617888             [GAATCGCTATTCCCATGGTCCCGCCGAGATCTCGCTGAGTACAACTGAACAAGAAGTTGAATTCGCACCCACTGGGCCGAACCGATCACTCTCCTCGCTTCTGCCGAGAAAAAAGGGATTTAGCAAAATCAGACACGAGAGACATAACATCGATCGAATCC]




>consensus_2169#1
GAATCGCTATTCCCATGGTCCCGCCGAGATCTCGCTGAGTACAACTGAACAAGAAGTTGA
ATTCGCACCCACTGGGCCGAACCGATCACTCTCCTCGCTTCTGCCGAGAAAAAAGGGATT
TAGCAAAATCAGACACGAGAGACATAACATCGATCGAATCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2169#0      CCGCTGCGTGGGGGTCTAGTGCATGCCCATCACACCACCACCACCATCAATTTTTATCAC 60
consensus_2169#1      ------------------------------------------------------------
                                                                                  

consensus_2169#0      TAGGAAGGAGCTTAGAAATGGAGATGGATACAACGGGACAGAGATTTATCGATATACATA 120
consensus_2169#1      ------------------------------------------------------------
                                                                                  

consensus_2169#0      TATACAAGCCAACTGACACCTTCTATATCCCATGATGATGCTGCACGTATATCCATGCTG 180
consensus_2169#1      ------------------------------------------------------------
                                                                                  

consensus_2169#0      AGGGCATACATCTAAAGTACAGGAATCGCTATTCCCATGGTCTTGCTGAGATCTTGCTGA 240
consensus_2169#1      ----------------------GAATCGCTATTCCCATGGTCCCGCCGAGATCTCGCTGA 38
                                            ********************  ** ******* *****

consensus_2169#0      GTACAACTGAACAAGAAGTTGAATTTTC------CGAATCGATCCGA--ACTCTCCTCGC 292
consensus_2169#1      GTACAACTGAACAAGAAGTTGAATTCGCACCCACTGGGCCGAACCGATCACTCTCCTCGC 98
                      *************************  *       *   *** ****  ***********

consensus_2169#0      TTCTGCCGAGAAAAAAGGGAGTTAGCAAAATTAGACACGAGAGACATAACATTGATCGAA 352
consensus_2169#1      TTCTGCCGAGAAAAAAGGGATTTAGCAAAATCAGACACGAGAGACATAACATCGATCGAA 158
                      ******************** ********** ******************** *******

consensus_2169#0      TCCAATGCACACCGATTGCGTCCACCGATGCATCATCACTTGCACCCGTTGCTACTATGT 412
consensus_2169#1      TCC--------------------------------------------------------- 161
                      ***                                                         

consensus_2169#0      TCACGTGTGCTTCTGTGTAGTTCTCGCACTTGGTGCCGTAGTGTTGTGAAGCAAAGAGCG 472
consensus_2169#1      ------------------------------------------------------------
                                                                                  

consensus_2169#0      AGAGAACGGGGGAGAGAAAGCCATGCTACTACTAAATAGGCATAACATTTTGGAAACTAC 532
consensus_2169#1      ------------------------------------------------------------
                                                                                  

consensus_2169#0      CCAAACACACCCACTCAACAACATATATTTACTCGCTACGCGTAGATAATGATA 586
consensus_2169#1      ------------------------------------------------------