These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2173#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence [CCGAAATCGTCTGCGAACGATGCAATCTTTTGTGTGATAATAAACGCCGCCTGTAGTGATAAAGTTGGCTTGCATTTTTTTTACACTTTTTTAAACTACCCCTAGGAGGGTGGGATCATCAATTTTCGTCGAAGTTTGTGCGTGACGCACGGAGCGAATGCGGGCTGGGTGTGTAGTGCTTGACTGGGTGATAACATGTCGTTGTACAAAATACGGGTGGCTGACTTGGAGAACATCTTGGAACAGGATGAGATAGATCTGAAAGTGCTCCGAAGCTTCTGCTTCAATGGCATACCGGACTGCAACGGATTTCGAGCGCTGTGCTGGAAGCTGCTGCTCGGCTATCTGAACCCCAAAAAGTCAACATGGCCAGCGAAGCTTACGAAGCAGCGCGAACTGTACAAACAGTTTGTCAAGGAAATGGTAATTTCGCCCGGCGAACAGGATGGCCCGGAATGTATCGATCATCCGCTGAGCGACGGTCCGGAAAGCAATTGGAGCACGTTCTTCAGGGACAATGAGGTGCTGCTACAGATCGACAAGGACGTGAGGCGGCTCTGTCCCGACATTTCCTTCTTCCAGCAGGCGACCGAGTTCCCCGTGCGAGTTTGTGAAAGAGCGCGAGCGAAAGCTGCACGTGCGAG] [+] EMBL BM579301 [CCGAAATCGTCTGCGAACGATGCAATCTTTTGTGTGATAATAAACGCCGCCTGTAGTGATAAAGTTGGCTTGCATTTTTTTTACACTTTTTTAAACTACCCCTAGGAGGGTGGGATCATCAATTTTCGTCGAAGTTTGTGCGTGACGCACGGAGCGAATGCGGGCTGGGTGTGTAGTGCTTGACTGGGTGATAACATGTCGTTGTACAAAATACGGGTGGCTGACTTGGAGAACATCTTGGAACAGGATGAGATAGATCTGAAAGTGCTCCGAAGCTTCTGCTTCAATGGCATACCGGACTGCAACGGATTTCGAGCGCTGTGCTGGAAGCTGCTGCTCGGCTATCTGAACCCCAAAAAGTCAACATGGCCAGCGAAGCTTACGAAGCAGCGCGAACTGTACAAACAGTTTGTCAAGGAAATGGTAATTTCGCCCGGCGAACAGGATGGCCCGGAATGTATCGATCATCCGCTGAGCGACGGTCCGGAAAGCAATTGGAGCACGTTCTTCAGGGACAATGAGGTGCTGCTACAGATCGACAAGGACGTGAGGCGGCTCTGTCCCGACATTTCCTTCTTCCAGCAGGCGACCGAGTTCCCCGTGCGAGTTTGTGAAAGAGCGCGAGCGAAAGCTGCACGTGCGAG] consensusID : consensus_2173#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [GCAGATCGCCACGAGGTCAAAGCTTACGAAGCAGCGCGACACTGTACAACAGTTTGTCAAGGAAATGGTAATTTCGCCCGGCGAACAGGATGGTCCGGAATGTATCGATCATCCGCTGAGCGACGGTCCGGAAAGCAATTGGAGCACGTTCTTCAGGGATAATGAGGTGCTGCTACAGATCGACAAGGACGTGAGGCGGCTCTGTCCCGACATTTCCTTCTTCCAGCAGGCGACCGAGTTCCCGTGCGAGTTCGTGAAGGAGCGCGAGCGAAAGCTGCACGTGCGAGTCGCTCCCACGACGCTCAGTTCCGGCAACGTGGAGCGGAAAGGTGTCGGTATGACCAAGATCAATCTCATCACGAAACGGGCGACGGAAAGCTACGAAGCGATGGATGCCGGCCACGGAGGCACACTGGCGAAGTGGTCGAACGGATACTGTNTCCCTATACGCGAAGCTTAAAACCCGGCAGGGGCTACGTGCAGGGGCATGAAACGAAATCATCGGGGCCATCTACTACGTGTTCGNNNGTCGATCCGCACCTACGAGTATCGGCCGGTACAGCCGANGCGGACTGCTTACTTCCTGCTTCACCGACGCTCGAT] [+] EMBL AL696365 [GCAGATCGCCACGAGGTCAAAGCTTACGAAGCAGCGCGACACTGTACAACAGTTTGTCAAGGAAATGGTAATTTCGCCCGGCGAACAGGATGGTCCGGAATGTATCGATCATCCGCTGAGCGACGGTCCGGAAAGCAATTGGAGCACGTTCTTCAGGGATAATGAGGTGCTGCTACAGATCGACAAGGACGTGAGGCGGCTCTGTCCCGACATTTCCTTCTTCCAGCAGGCGACCGAGTTCCCGTGCGAGTTCGTGAAGGAGCGCGAGCGAAAGCTGCACGTGCGAGTCGCTCCCACGACGCTCAGTTCCGGCAACGTGGAGCGGAAAGGTGTCGGTATGACCAAGATCAATCTCATCACGAAACGGGCGACGGAAAGCTACGAAGCGATGGATGCCGGCCACGGAGGCACACTGGCGAAGTGGTCGAACGGATACTGTNTCCCTATACGCGAAGCTTAAAACCCGGCAGGGGCTACGTGCAGGGGCATGAAACGAAATCATCGGGGCCATCTACTACGTGTTCGNNNGTCGATCCGCACCTACGAGTATCGGCCGGTACAGCCGANGCGGACTGCTTACTTCCTGCTTCACCGACGCTCGAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2173#0 -------------------------CCGAAATCGTCTGCGAACGATGCAATCTTTTGT-G 34 consensus_2173#1 GCAGATCGCCACGAGGTCAAAGCTTACGAAGCAGCGCG-ACACTGTACAACAGTTTGTCA 59 **** * * ** * *** ***** consensus_2173#0 TGATAATAAACGCCGCCTGTAGTGATAAAGTTGGCTTGCATTTTTTTTACACTTTTTTAA 94 consensus_2173#1 AGGAAATGGTAATTTCGCCCGGCGAACAGGATGGTCCGGAATGTATCGATCATCCGCTGA 119 * *** * * ** * * *** * * * * * * * * * consensus_2173#0 ACTACCCCTAGGAGGGTGGGATCATCAATTTTCGTCGAAGTTTGTGCGTGACGCACGGAG 154 consensus_2173#1 GCGACGGTCCGGAAAGCAATTGGAGCA-CGTTCTTCAGGGATAATGAGGTGC---TGCTA 175 * ** *** * * ** *** ** * * ** * * * consensus_2173#0 CGAATGCGGGCTGGGTGTGTAGTGCTTGACTGGGTGATAACATGTCGTTGTACAAAATAC 214 consensus_2173#1 CAGAT-CGACAAGGACGTGAGGC----GGCTCTGTCCCGACATTTCCTTCTTCCAG---C 227 * ** ** ** *** * * ** ** **** ** ** * * * * consensus_2173#0 GGGTGGCTGACTTGGAGAACA---TCTTGGAACAGGATGAGATAGATCTGAAAGTGCTCC 271 consensus_2173#1 AGGCGACCGAGTTCCCGTGCGAGTTCGTGAAGGAGCGCGAGCGAAAGCTGCACGTGCGA- 286 ** * * ** ** * * ** ** * ** *** * * *** * **** consensus_2173#0 GAAGCTTCTGCTTCAATGGCATACCGGACTGC--AACGGATTTCGAGCGCTGTG-CTGGA 328 consensus_2173#1 GTCGCTCCCACGACGCTCAGTTCCGGCAACGTGGAGCGGAAAGGTGTCGGTATGACCAAG 346 * *** * * * * * * * * * * **** ** * ** * consensus_2173#0 AGCTGCTGCTCGGCTATCTGAACCCCAAAAAGTCAACATGGCCAGCGAAGCTTACGAAGC 388 consensus_2173#1 ATCAATCTCATCACGAAACGGGCGACGGAAAGCTA-CGAAGCGATGGATGCCGGCCACGG 405 * * * * * * * * **** * * ** * ** ** * * * consensus_2173#0 AGCGCGAACTGTACAAACAGTTTGTCAAGGAAATGGTAATTTCGCCCGGCGAACAGGATG 448 consensus_2173#1 AG-GCACACTGGCGAAGTGGTCGAAC--GGATACTGTNTCCCTATACG-CGAAGCTTAAA 461 ** ** **** ** ** * *** * ** ** **** * consensus_2173#0 GCCCGGAATGTATCGATCATCCGCTGAGCGACGGTCCGGAAAGCAATTGGAGCACGTTCT 508 consensus_2173#1 ACCCGGCAGG----GGCTACGTGCAGGGGCATGAAACG-AAATCATCGGGGCCATCTACT 516 ***** * * * * ** * * * * ** *** ** ** ** * ** consensus_2173#0 TCAGG----GACAATGAGGTGCTGCTACAG--ATCGACAAGGACGTGAGGCGGCTCTGTC 562 consensus_2173#1 ACGTGTTCGNNNGTCGATCCGCACCTACGAGTATCGGCCGGTAC---AGCCGANGCGGAC 573 * * ** ** **** **** * * ** ** ** * * * consensus_2173#0 CCGACATTTCCTTCTTCCAGCAGGCGACCGAGTTCCCCGTGCGAGTTTGTGAAAGAGCGC 622 consensus_2173#1 TGCTTACTTCCTGCTTC--ACCGACGCTCGAT---------------------------- 603 * ***** **** * * ** *** consensus_2173#0 GAGCGAAAGCTGCACGTGCGAG 644 consensus_2173#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||