These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2179#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 741 fasta sequence [GACCGTCATCCTGACGGCGGCCAAATCCTGGAACCTGATCGTGCGGCTGCTGGTGGGCATTGGCCGGTACCGCGACATGTACTACTGCTTCGAGACGCTCATCAACCACGAGCAGTTCGAATCGCTGCTCGGCCAGTTTGACGATCGGGCGGCAAACGGGCGACGGTTGCAGTGCGCCATCATCACCTTCCTGAACGAGCACTGTCCCGAGCGGCGCGATTACTTCCGCCTGGCGGCGCTCCACTTCCGCATGTACCGGGAGATCGCGGAGCTGTGGGAGTCGGAAGCGCACGGTACGATCGATGCGATCGTGAAGACGTACGAGCTCAAGCAACCGGTTGCGGCGAAAATGGCCTCTTCCTCACCTGCCGTGTACTGCCATCGGCTACAGGCAACTCCCTTGGTGCAGACGGAACTAACCAGCAGCAGCAACACAAGCAGCCAGACCACTGCCACCTGTCTCTCCGTGCTGAACATTCGCCCACCGAGTGAAGACAATCGTCGGGGAGGAACGATGCAGGAACCGGCGGGCACCACCAACGTTGCTACCGGCACGCTGCTCTACTATATCAACTTCCTGCTGACCGTCCCGCAAGCGCTCATCGTGGGCCGGGCGTACGGTATCGAAATTAACTGGCCCGGTGCAATCTATCAGCACTACATCATGCAGGGTGAATCGGCGTACCTGGAGGACTACCTGGACCGGCTCCCGCTAACGGACGGGATGATTGAAACGCTCGT] [+] EMBL BX602075 [GACCGTCATCCTGACGGCGGCCAAATCCTGGAACCTGATCGTGCGGCTGCTGGTGGGCATTGGCCGGTACCGCGACATGTACTACTGCTTCGAGACGCTCATCAACCACGAGCAGTTCGAATCGCTGCTCGGCCAGTTTGACGATCGGGCGGCAAACGGGCGACGGTTGCAGTGCGCCATCATCACCTTCCTGAACGAGCACTGTCCCGAGCGGCGCGATTACTTCCGCCTGGCGGCGCTCCACTTCCGCATGTACCGGGAGATCGCGGAGCTGTGGGAGTCGGAAGCGCACGGTACGATCGATGCGATCGTGAAGACGTACGAGCTCAAGCAACCGGTTGCGGCGAAAATGGCCTCTTCCTCACCTGCCGTGTACTGCCATCGGCTACAGGCAACTCCCTTGGTGCAGACGGAACTAACCAGCAGCAGCAACACAAGCAGCCAGACCACTGCCACCTGTCTCTCCGTGCTGAACATTCGCCCACCGAGTGAAGACAATCGTCGGGGAGGAACGATGCAGGAACCGGCGGGCACCACCAACGTTGCTACCGGCACGCTGCTCTACTATATCAACTTCCTGCTGACCGTCCCGCAAGCGCTCATCGTGGGCCGGGCGTACGGTATCGAAATTAACTGGCCCGGTGCAATCTATCAGCACTACATCATGCAGGGTGAATCGGCGTACCTGGAGGACTACCTGGACCGGCTCCCGCTAACGGACGGGATGATTGAAACGCTCGT] consensusID : consensus_2179#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 396 fasta sequence [CCGTGTACTGCCATCGGCTACAGGCAACTCCCTTGGTGCAGACGGAACTAACCAGCGCAATGGACGCGTTTACACACGCCACGGNAAAACTATCTGCTAGATAACAATCTGACGCTTGCGCAACGAGCCGCAGCCAATGCGGAGCTGATAGCGCTACAAATCTCCTACGTACGGCAAGCACTGGCCGCATCCGAGAAGGGACAGGGCNATGTGAATCCTTCACCGAGCAGCAGCAGCAGCAGCAACACAAGCAGCCAGACCACTGCCACCTGTCTCTCCGTGCTGAACATTCGCCCACCGAGTGAAGACAATCGTCGGGGAGGAACGATGCAGGAACCGGCGGGCACNACCAACGTTGCTACCGGCACNCTGCTCTACTACATNAACTTCCCTGCT] [+] EMBL BX626085 [CCGTGTACTGCCATCGGCTACAGGCAACTCCCTTGGTGCAGACGGAACTAACCAGCGCAATGGACGCGTTTACACACGCCACGGNAAAACTATCTGCTAGATAACAATCTGACGCTTGCGCAACGAGCCGCAGCCAATGCGGAGCTGATAGCGCTACAAATCTCCTACGTACGGCAAGCACTGGCCGCATCCGAGAAGGGACAGGGCNATGTGAATCCTTCACCGAGCAGCAGCAGCAGCAGCAACACAAGCAGCCAGACCACTGCCACCTGTCTCTCCGTGCTGAACATTCGCCCACCGAGTGAAGACAATCGTCGGGGAGGAACGATGCAGGAACCGGCGGGCACNACCAACGTTGCTACCGGCACNCTGCTCTACTACATNAACTTCCCTGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2179#0 GACCGTCATCCTGACGGCGGCCAAATCCTGGAACCTGATCGTGCGGCTGCTGGTGGGCAT 60 consensus_2179#1 ------------------------------------------------------------ consensus_2179#0 TGGCCGGTACCGCGACATGTACTACTGCTTCGAGACGCTCATCAACCACGAGCAGTTCGA 120 consensus_2179#1 ------------------------------------------------------------ consensus_2179#0 ATCGCTGCTCGGCCAGTTTGACGATCGGGCGGCAAACGGGCGACGGTTGCAGTGCGCCAT 180 consensus_2179#1 -------------------------------------------------CCGTGTACTGC 11 * *** * consensus_2179#0 CATCACCTTCCTGAACGAGCACTGTCCCGAGCGGCGCGATTACTTCCGCCTGGCGGCGCT 240 consensus_2179#1 CATCGGCTACAGGCAACTCCCTTGGTGCAGACGGAACTA--ACCAGCGCAATG-GACGC- 67 **** ** * * * * ** * *** * * ** *** * * *** consensus_2179#0 CCACTTCCGCATGTACCGGGAGATCGCGGAGCTG--TGGGAGTCGGAAGCGCACGGTACG 298 consensus_2179#1 --GTTTACACACGCCACGGNAAAACTATCTGCTAGATAACAATCTGACGCTTGCGCAACG 125 ** * ** * *** * * * *** * * ** ** ** ** *** consensus_2179#0 ATCGATGCGATCGTGAAGACGTACGAGCTCAAGCAACCGGTTGCG-GCGAAAATGGCCTC 357 consensus_2179#1 AGCCGCA-GCCAATGCGGAGCTGATAGCGCTACAAATCTCCTACGTACGGCAA--GCACT 182 * * * ** ** * *** * * ** * * ** ** ** ** consensus_2179#0 TTCCTCACCTGCCGTGTACTGCCATCGGCTACAGGCAACTCCCTTGGTGCAGACGGAACT 417 consensus_2179#1 GGCCGCATC---CGAGAAGGGACAG-GGCNATGTGAATCCTTCACCGAGCAGCAG----- 233 ** ** * ** * * * ** *** * * * * * * **** * consensus_2179#0 AACCAGCAGCAGCAACACAAGCAGCCAGACCACTGCCACCTGTCTCTCCGTGCTGAACAT 477 consensus_2179#1 ---CAGCAGCAGCAACACAAGCAGCCAGACCACTGCCACCTGTCTCTCCGTGCTGAACAT 290 ********************************************************* consensus_2179#0 TCGCCCACCGAGTGAAGACAATCGTCGGGGAGGAACGATGCAGGAACCGGCGGGCACCAC 537 consensus_2179#1 TCGCCCACCGAGTGAAGACAATCGTCGGGGAGGAACGATGCAGGAACCGGCGGGCACNAC 350 ********************************************************* ** consensus_2179#0 CAACGTTGCTACCGGCACGCTGCTCTACTATATCAACTTCC-TGCTGACCGTCCCGCAAG 596 consensus_2179#1 CAACGTTGCTACCGGCACNCTGCTCTACTACATNAACTTCCCTGCT-------------- 396 ****************** *********** ** ******* **** consensus_2179#0 CGCTCATCGTGGGCCGGGCGTACGGTATCGAAATTAACTGGCCCGGTGCAATCTATCAGC 656 consensus_2179#1 ------------------------------------------------------------ consensus_2179#0 ACTACATCATGCAGGGTGAATCGGCGTACCTGGAGGACTACCTGGACCGGCTCCCGCTAA 716 consensus_2179#1 ------------------------------------------------------------ consensus_2179#0 CGGACGGGATGATTGAAACGCTCGT 741 consensus_2179#1 ------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||