cluster # 2185

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Anopheles gambiae
cluster # 2185 cluster # 2185 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2185#0 length = 845 sequences # 1

consensus_2185#1 length = 697 sequences # 1

consensusID : consensus_2185#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 845
fasta sequence

                              [GAATCGNCACGAGGANGTATGTTCACCACTCGGTTGTTGGCTCGGAGCTCTCGTGTCACTTGGCCTAACGGCTTGTTCCTTTGCCTTTACCGAACATGGTGCGATCGTTCAGAGCATTGTGCAAGCACAGCACGAGTGTGTAACGTACCTGAACCTCCCAAAGCATCGCGTTATATCAGTACCTCATGTACAACTATTCGAACGATGCCAGAAACCAAGGCAAATGCTTCGCTGCGTCGGATTGATTCTGCAATGGTGGAAGTCGGACGGAACGCTTAACGAGCACGTGTTAGCACAGTAACTTCATGCCGGACACCAGTGACTCAGACTAGCGTAGTAGAGTCGAGANNGTACCGCAGTGAGCATTGAGCGTAAAGNTCCGGGTGAGAATNGACGAANCTGGTGNCCAGCNAGANGCGGTTCGAGGACGTTCCCGNGTGGTTTAACCCTGNGAAGGCAACNGCTATTGGGCGGAAAACTGGGCTCAAACATGGTTCACCAAANGGCAGGTGCNAAACCGGAGCTCTAAGCGTGAACCGACACGGNAACCGTCACCCGAAAAACCCAGCTATGNAACCATNTACANNAGNAGTTCCACTCNCCCAANNAGAAATGNTCCNTCNNCTGNAACCAAACTTGTCCCNCTCTTATATCATCCCCCCGAACCCACTNTGTCTAACANCANNCGACATGGGNGAACACTTATCCAATACNCCACGANNCAACAAACAACCTAGCAGATATTNCCCNATGATAANAACACNNCCGCGACGAACCCAAGCAACTCCGTACTNTANACNCCTTCCACATAATCAACAAATATNGCCCGTTCGCACCNAATCTCA]

[+] EMBL BX469218             [GAATCGNCACGAGGANGTATGTTCACCACTCGGTTGTTGGCTCGGAGCTCTCGTGTCACTTGGCCTAACGGCTTGTTCCTTTGCCTTTACCGAACATGGTGCGATCGTTCAGAGCATTGTGCAAGCACAGCACGAGTGTGTAACGTACCTGAACCTCCCAAAGCATCGCGTTATATCAGTACCTCATGTACAACTATTCGAACGATGCCAGAAACCAAGGCAAATGCTTCGCTGCGTCGGATTGATTCTGCAATGGTGGAAGTCGGACGGAACGCTTAACGAGCACGTGTTAGCACAGTAACTTCATGCCGGACACCAGTGACTCAGACTAGCGTAGTAGAGTCGAGANNGTACCGCAGTGAGCATTGAGCGTAAAGNTCCGGGTGAGAATNGACGAANCTGGTGNCCAGCNAGANGCGGTTCGAGGACGTTCCCGNGTGGTTTAACCCTGNGAAGGCAACNGCTATTGGGCGGAAAACTGGGCTCAAACATGGTTCACCAAANGGCAGGTGCNAAACCGGAGCTCTAAGCGTGAACCGACACGGNAACCGTCACCCGAAAAACCCAGCTATGNAACCATNTACANNAGNAGTTCCACTCNCCCAANNAGAAATGNTCCNTCNNCTGNAACCAAACTTGTCCCNCTCTTATATCATCCCCCCGAACCCACTNTGTCTAACANCANNCGACATGGGNGAACACTTATCCAATACNCCACGANNCAACAAACAACCTAGCAGATATTNCCCNATGATAANAACACNNCCGCGACGAACCCAAGCAACTCCGTACTNTANACNCCTTCCACATAATCAACAAATATNGCCCGTTCGCACCNAATCTCA]




>consensus_2185#0
GAATCGNCACGAGGANGTATGTTCACCACTCGGTTGTTGGCTCGGAGCTCTCGTGTCACT
TGGCCTAACGGCTTGTTCCTTTGCCTTTACCGAACATGGTGCGATCGTTCAGAGCATTGT
GCAAGCACAGCACGAGTGTGTAACGTACCTGAACCTCCCAAAGCATCGCGTTATATCAGT
ACCTCATGTACAACTATTCGAACGATGCCAGAAACCAAGGCAAATGCTTCGCTGCGTCGG
ATTGATTCTGCAATGGTGGAAGTCGGACGGAACGCTTAACGAGCACGTGTTAGCACAGTA
ACTTCATGCCGGACACCAGTGACTCAGACTAGCGTAGTAGAGTCGAGANNGTACCGCAGT
GAGCATTGAGCGTAAAGNTCCGGGTGAGAATNGACGAANCTGGTGNCCAGCNAGANGCGG
TTCGAGGACGTTCCCGNGTGGTTTAACCCTGNGAAGGCAACNGCTATTGGGCGGAAAACT
GGGCTCAAACATGGTTCACCAAANGGCAGGTGCNAAACCGGAGCTCTAAGCGTGAACCGA
CACGGNAACCGTCACCCGAAAAACCCAGCTATGNAACCATNTACANNAGNAGTTCCACTC
NCCCAANNAGAAATGNTCCNTCNNCTGNAACCAAACTTGTCCCNCTCTTATATCATCCCC
CCGAACCCACTNTGTCTAACANCANNCGACATGGGNGAACACTTATCCAATACNCCACGA
NNCAACAAACAACCTAGCAGATATTNCCCNATGATAANAACACNNCCGCGACGAACCCAA
GCAACTCCGTACTNTANACNCCTTCCACATAATCAACAAATATNGCCCGTTCGCACCNAA
TCTCA

consensusID : consensus_2185#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 697
fasta sequence

                              [TCCAGCAGAATCCCGAGGTTATTGTTGGTCGGAGCTCTCGTGTCACTTGTGCCTAACTGTTGTACCTATTGCCTTTACTGAACATGGTGCGATCGTCCAGAGCATTGTGCAAGCACAGGACGAGTGTGTAACGTACCTGAACCTCCAAGCATCGCTTATATCAGTAACTCATGTACAATATTCGAATGATGCAAAAACCAAGAATGCTTCGTGGTCGGATTGATCCTGNAATGGTGGAATCCGAGGAAGCTAAAANGAGCACGTGGTTAAAGCACCACGGTACCTTTCAATGCNCGGACACCAAGNTGAGCTTCNAGGACTAACTATAAATTCGGAGCGGTACCGGTCTCGCANTTTGAGCGTAAAACGCTCCCNGGTTAGAATGAACGATCCTTGTAGCAAGGCAAGAAGCCGTTACCGAAGAACAGTTTCCCCAGATGTCTAACCTATGCCCAGACANGGNNACTNGTGCCTGAACATTGGGTTCCAAACTTGTTCCCCCAAAAGGTTGGGTCACCCTGGCTACCAGACCGGAGCGAAAGNTGGACTTCCAACCGGAAATCAATCNACTTGGCACCTTTACCTAGTACTTACNGAATAGNTTGGCTATGGGGCACCATTATACCCGGTTCCTCCGGACNTCTTTGGAGCCGGTGTGGAACTTTAACATCTCCCNAGCNAGGANCTTGTTCCCTTG]

[+] EMBL AL696430             [TCCAGCAGAATCCCGAGGTTATTGTTGGTCGGAGCTCTCGTGTCACTTGTGCCTAACTGTTGTACCTATTGCCTTTACTGAACATGGTGCGATCGTCCAGAGCATTGTGCAAGCACAGGACGAGTGTGTAACGTACCTGAACCTCCAAGCATCGCTTATATCAGTAACTCATGTACAATATTCGAATGATGCAAAAACCAAGAATGCTTCGTGGTCGGATTGATCCTGNAATGGTGGAATCCGAGGAAGCTAAAANGAGCACGTGGTTAAAGCACCACGGTACCTTTCAATGCNCGGACACCAAGNTGAGCTTCNAGGACTAACTATAAATTCGGAGCGGTACCGGTCTCGCANTTTGAGCGTAAAACGCTCCCNGGTTAGAATGAACGATCCTTGTAGCAAGGCAAGAAGCCGTTACCGAAGAACAGTTTCCCCAGATGTCTAACCTATGCCCAGACANGGNNACTNGTGCCTGAACATTGGGTTCCAAACTTGTTCCCCCAAAAGGTTGGGTCACCCTGGCTACCAGACCGGAGCGAAAGNTGGACTTCCAACCGGAAATCAATCNACTTGGCACCTTTACCTAGTACTTACNGAATAGNTTGGCTATGGGGCACCATTATACCCGGTTCCTCCGGACNTCTTTGGAGCCGGTGTGGAACTTTAACATCTCCCNAGCNAGGANCTTGTTCCCTTG]




>consensus_2185#1
TCCAGCAGAATCCCGAGGTTATTGTTGGTCGGAGCTCTCGTGTCACTTGTGCCTAACTGT
TGTACCTATTGCCTTTACTGAACATGGTGCGATCGTCCAGAGCATTGTGCAAGCACAGGA
CGAGTGTGTAACGTACCTGAACCTCCAAGCATCGCTTATATCAGTAACTCATGTACAATA
TTCGAATGATGCAAAAACCAAGAATGCTTCGTGGTCGGATTGATCCTGNAATGGTGGAAT
CCGAGGAAGCTAAAANGAGCACGTGGTTAAAGCACCACGGTACCTTTCAATGCNCGGACA
CCAAGNTGAGCTTCNAGGACTAACTATAAATTCGGAGCGGTACCGGTCTCGCANTTTGAG
CGTAAAACGCTCCCNGGTTAGAATGAACGATCCTTGTAGCAAGGCAAGAAGCCGTTACCG
AAGAACAGTTTCCCCAGATGTCTAACCTATGCCCAGACANGGNNACTNGTGCCTGAACAT
TGGGTTCCAAACTTGTTCCCCCAAAAGGTTGGGTCACCCTGGCTACCAGACCGGAGCGAA
AGNTGGACTTCCAACCGGAAATCAATCNACTTGGCACCTTTACCTAGTACTTACNGAATA
GNTTGGCTATGGGGCACCATTATACCCGGTTCCTCCGGACNTCTTTGGAGCCGGTGTGGA
ACTTTAACATCTCCCNAGCNAGGANCTTGTTCCCTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2185#0      GAATCGNCACGAGGANGTATGTTCACCACTCGGTTGTTGGCTCGGAGCTCTCGTGTCACT 60
consensus_2185#1      ------------TCCAGCAGAATCCCGAGGTTATTGTTGG-TCGGAGCTCTCGTGTCACT 47
                                      * *   ** * *     ******* *******************

consensus_2185#0      TG-GCCTAACGGCTTGTTCCTTTGCCTTTACCGAACATGGTGCGATCGTTCAGAGCATTG 119
consensus_2185#1      TGTGCCTAACTGTTGTACCTATTGCCTTTACTGAACATGGTGCGATCGTCCAGAGCATTG 107
                      ** ******* * *    *  ********** ***************** **********

consensus_2185#0      TGCAAGCACAGCACGAGTGTGTAACGTACCTGAACCTCCCAAAGCATCGCGTTATATCAG 179
consensus_2185#1      TGCAAGCACAGGACGAGTGTGTAACGTACCTGAACCTCC--AAGCATCGC-TTATATCAG 164
                      *********** ***************************  ********* *********

consensus_2185#0      TACCTCATGTACAACTATTCGAACGATGCCAGAAACCAAGGCAAATGCTTCGCTGCGTCG 239
consensus_2185#1      TAACTCATGTACAA-TATTCGAATGATGC-AAAAACCAAG---AATGCTTCGTG--GTCG 217
                      ** *********** ******** ***** * ********   *********    ****

consensus_2185#0      GATTGATTCTGCAATGGTGGAAGTCGGACGGAACGCTTAACGAGCACGTGTT------AG 293
consensus_2185#1      GATTGATCCTGNAATGGTGGAATCCGA--GGAAGCTAAAANGAGCACGTGGTTAAAGCAC 275
                      ******* *** **********  **   ****     ** ********* *      * 

consensus_2185#0      CACAGTAACTTC--ATGCC-GGACACCA--GTGA----CTCAGACTAGCGTAGTAGAGTC 344
consensus_2185#1      CACGGTACCTTTCAATGCNCGGACACCAAGNTGAGCTTCNAGGACTAAC--TATAAATTC 333
                      *** *** ***   ****  ********   ***    *   ***** *    ** * **

consensus_2185#0      GAGANNGTACCGCAGT-GAGCATTGAGCGTAAAGN---TCCGGGTGAGAATNGACGAANC 400
consensus_2185#1      GGAGCGGTACCGGTCTCGCANTTTGAGCGTAAAACGCTCCCNGGTTAGAATGAACGATCC 393
                      *     ******   * *    ***********      ** *** *****  ****  *

consensus_2185#0      TGGTGNCCAG-CNAGANGCGGTT--CGAGGACG---TTCCCGNGTGGTTTAACCC-TGNG 453
consensus_2185#1      TTGTAGCAAGGCAAGAAGCCGTTACCGAAGAACAGTTTCCCCAGATGTCTAACCTATGCC 453
                      * **  * ** * *** ** ***  *** **     *****  *  ** *****  **  

consensus_2185#0      AAGGCAACNGCTATTGGGCG-GAAAACTGGGCTC-AAACATGGTTCACCAAANGGCAGGT 511
consensus_2185#1      CAGACANGGNNACTNGTGCCTGAACATTGGGTTCCAAACTTGTTCCCCCAAAAGGTTGGG 513
                       ** **       * * **  *** * **** ** **** ** * * ***** **  ** 

consensus_2185#0      GCNAAACCGGAGCTCTAAGCGTGAACCGACACGGNAACCGTCACCCGAAAAACCCAGCTA 571
consensus_2185#1      TC---ACCCTGGCTACCAGACCGGAGCGAAAGNTGGACTTCCAACCGGAAA--TCAATCN 568
                       *   ***   ***   **   * * *** *     **   ** *** ***   **    

consensus_2185#0      TGNAACCATNTACANNAGNAGTTCCACTCNCCCAANNAGAAATGNTCCNTCNNCTGNAAC 631
consensus_2185#1      ACTTGGCACCTTTACC--TAGT---ACTTACN---GAATAGNTTGGCTATGGGGCACCAT 620
                            **  *  *     ***   ***  *      * *  *   *  *        * 

consensus_2185#0      CAAACTTGTCCCNCTCTTATATCATCCCCCCGAACCCACTNTGTCTAACANCANNCGACA 691
consensus_2185#1      TATACCCGGTTCCTCCGGACNTCTTTGGAGCCGGTGTGGAAC-TTTAACATCTCCCNAGC 679
                       * **  *   *   *  *  ** *     *            * ***** *   * *  

consensus_2185#0      TGGGNGAACACTTATCCAATACNCCACGANNCAACAAACAACCTAGCAGATATTNCCCNA 751
consensus_2185#1      NAGGANCTTGTTCCCTTG------------------------------------------ 697
                        **       *                                                

consensus_2185#0      TGATAANAACACNNCCGCGACGAACCCAAGCAACTCCGTACTNTANACNCCTTCCACATA 811
consensus_2185#1      ------------------------------------------------------------
                                                                                  

consensus_2185#0      ATCAACAAATATNGCCCGTTCGCACCNAATCTCA 845
consensus_2185#1      ----------------------------------