These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2188#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 557 fasta sequence [GCCCGAGGTTACACGAACGTACCGCCATCTGTTCTACGAACGANGAGGATTTGTTCTTCACTCCTTTTTGCCTTACTATTACTCAATCCGAGGAAAGTGCAAAGATGGTTTCACCTACGTGTCCTACATCAACGGGGGCCATTCGCCTTGGAGCTTATACGATTATTTGAAGTACTGGTGTTCCCAGGTTCTAACTGCCGGTGGACTTTGCCCCTGGATCTGTGGCCGAATGCGGACGGCTTTCGCCTGGGTATGCTACCGTACGATTGGGCGGTTTCATCTTCAGCAGGACGAATAGATAGATCGGACCCGAAGCACAGGAGAGTGGTCGACCTATCGCAAATATCGCCACATCAATCAACCCAGCAAACAGTTCACTAGTTTCAGTTNNNTACTCTTATATTCGTTCCATCGTCCGGGTAGATTTTGAAACTCTTCCATCGTTTNNCCATCGATTGTCGATNGTGTCCTCCCAACGAGATATGCATTCTGCTACACCCTCCTCTACTATTACCTTCCGCAAAGTTTAACGTATCCTCAGATACAAACACACGCAC] [+] EMBL AL696451 [GCCCGAGGTTACACGAACGTACCGCCATCTGTTCTACGAACGANGAGGATTTGTTCTTCACTCCTTTTTGCCTTACTATTACTCAATCCGAGGAAAGTGCAAAGATGGTTTCACCTACGTGTCCTACATCAACGGGGGCCATTCGCCTTGGAGCTTATACGATTATTTGAAGTACTGGTGTTCCCAGGTTCTAACTGCCGGTGGACTTTGCCCCTGGATCTGTGGCCGAATGCGGACGGCTTTCGCCTGGGTATGCTACCGTACGATTGGGCGGTTTCATCTTCAGCAGGACGAATAGATAGATCGGACCCGAAGCACAGGAGAGTGGTCGACCTATCGCAAATATCGCCACATCAATCAACCCAGCAAACAGTTCACTAGTTTCAGTTNNNTACTCTTATATTCGTTCCATCGTCCGGGTAGATTTTGAAACTCTTCCATCGTTTNNCCATCGATTGTCGATNGTGTCCTCCCAACGAGATATGCATTCTGCTACACCCTCCTCTACTATTACCTTCCGCAAAGTTTAACGTATCCTCAGATACAAACACACGCAC] consensusID : consensus_2188#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 309 fasta sequence [GTTTAACGTATCCTCAGCATACAAACACACGCACACATACTATTACAGTCGACAGCATTTTCACGTGCATCGAGATCGTTTTATCGCAAGTGTTCATTCAACTGCGATCGCGATGTTTGTCTGCACACGAACAAGCGCAAACACATCCATTTAGCGAACATGCACAAGTAGTTGGCCATCCTTTTTTGTTAAATTAGGTTTAACAGGCTACGTTCGGAATGAAGGAACCGCAAATTGTGATGCGATTGTATGTTCTTTTGTCAGTACGCAAGTAGAAACCAAACGCCCGCAAGTGGTCTCGTTGTCATA] [+] EMBL BM608595 [GTTTAACGTATCCTCAGCATACAAACACACGCACACATACTATTACAGTCGACAGCATTTTCACGTGCATCGAGATCGTTTTATCGCAAGTGTTCATTCAACTGCGATCGCGATGTTTGTCTGCACACGAACAAGCGCAAACACATCCATTTAGCGAACATGCACAAGTAGTTGGCCATCCTTTTTTGTTAAATTAGGTTTAACAGGCTACGTTCGGAATGAAGGAACCGCAAATTGTGATGCGATTGTATGTTCTTTTGTCAGTACGCAAGTAGAAACCAAACGCCCGCAAGTGGTCTCGTTGTCATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2188#0 GCCCGAGGTTACACGAACGTACCGCCATCTGTTCTACGAACGANGAGGATTTGTTCTTCA 60 consensus_2188#1 ------------------------------------------------------------ consensus_2188#0 CTCCTTTTTGCCTTACTATTACTCAATCCGAGGAAAGTGCAA-AGATGGTTTCACCTACG 119 consensus_2188#1 -------------------------GTTTAACGTATCCTCAGCATACAAACACACGCACA 35 * * * * ** * * *** ** consensus_2188#0 TGTCCTACATCAACGGGGGCCATTCGCCTTGGAGCTTATACGATTATTTGAAGTACTGGT 179 consensus_2188#1 CATACTATTACAGTCGACAGCATTTTCACGTGCATCGA---GATCGTTTTAT-CGCAAGT 91 * *** ** * **** * * * *** *** * * ** consensus_2188#0 GTTCCCAGGTTCTAACTGCCGGTGGACTTTGCCCCTGGATCTGTGGCCGAATGCGGACGG 239 consensus_2188#1 GTTCA-----TTCAACTGCGATCGCGATGTTTGTCTGCA--CACGAACAAGCGCAAACA- 143 **** * ****** * * * *** * * * * ** ** consensus_2188#0 CTTTCGCCTGGGTATGCTACCGTACGATTGGGCGGTTTCATCTTCAGCAGGACGAATAGA 299 consensus_2188#1 CATCCATTTAGCGAACATGCACAAGTAGTTGGCCATCCTTTTTTGTTAAATTAGGTTTAA 203 * * * * * * * * * * * *** * * ** * * * * consensus_2188#0 TAGATCGGACCCGAAGCACAGGAGAGTGGTCGACCTATCGCAAATATCGCCACATCAATC 359 consensus_2188#1 CAGGCTACGTTCGGAATGAAGGA-------------ACCGCAAATTGTGATGCGATTGTA 250 ** ** * **** * ******* * * * consensus_2188#0 AACCCAGCAAACAGTTCACTAGTTTCAGTTNNNTACTCTTATATTCGTTCCATCGTCCGG 419 consensus_2188#1 TGTTCTTTTGTCAGTACGCAAGTAGAAACCAAACGCCCGCA-AGTGGTCTCGTTGTCATA 309 * **** * * *** * * * * * * ** * * *** consensus_2188#0 GTAGATTTTGAAACTCTTCCATCGTTTNNCCATCGATTGTCGATNGTGTCCTCCCAACGA 479 consensus_2188#1 ------------------------------------------------------------ consensus_2188#0 GATATGCATTCTGCTACACCCTCCTCTACTATTACCTTCCGCAAAGTTTAACGTATCCTC 539 consensus_2188#1 ------------------------------------------------------------ consensus_2188#0 AGATACAAACACACGCAC 557 consensus_2188#1 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||